MS019359 (gene) Bitter gourd (TR) v1

Overview


Name	MS019359
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	flowering time control protein FCA-like
Location	scaffold611: 597305 .. 600459 (-)
RNA-Seq Expression	MS019359
Synteny	MS019359

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TCCAAGCTGGATAGACACAGAGGAGACCGCTATGGCCATGGCTCCGGCCCCGACCGCCACTCCGGGCCTCCTTCTCGCTTCTCCGACTCCCCCCTCAACCATCACGACACTCGCCGTACTCCCCTTCCCGGACCCCACCGTCGCCCCTTCGACAGCCCACCCCGCTACTCCACTCCCCCTCCCGCTCCCGCTCCCGCCGGTTTTCGCCCAATGGGAGCTCCTGCAGGGGGTTTCCGTCCAATCCCCGGCTCTGCCGCTGCCTTTGGCTCCAACTTCCAGCCCCCACCTGTTGCAGGTCAGAAACGAGGCTATCCCTTCTCCGCCCGTGGAAGTTCTCCAGGTAAAGATTTTGCGGATTAATTCCAATTTCCAAGTATCTTTGCTTGCACTCTTTATTGCTTCTTTATGCTTCTTGTGCATAGGTCTGTTCTATGGAACTATAAAACATGGTTTGCCTCTAATTATCCCGTTATCGAGTAGTTCTGTTTGTGGGGTCTTTTTCTTGGTGAATTCTACCGATATATTTCACGCCCAGTCACACAATTACTCAATATTTTTATGCGAGTCACATAAATTAAAATGTTTACTGTGGAAGAAGAAACAAGATTTTGTTGGGTTGTAAAAAACTAGCAGTATTTCATTGATGATATGAAATGTACAAAAGGTCACAGGGTCACGTTACAAGAACGCCTTCCGATTAGAGGCAAGATTGTTCAGACTGTACCTATTGAAGGGGGATTATAATAGAACATTTACTAGGGCTAGAACAGCAACTCTTATAAAAAAAAAAAAATCTCAAAAGGAAGGGGTTAGGCATTGAAGACCCTATTATTCCTCTCAAGCCATAATCTCCCAAGAAAAGCCCCTGATGATTTGAACCCAAATGATTGCTGCCAGCCATAAACTCCAATCTTCTTAGCATGCATCATGGGCACCAATTTCCATATAACACATTTTCTTGATCTCTCTATAAACAATCTATTCTTATCGTAGTTCTCATATATTTTACACTGCATCTTCGCTATTTTGCATCTTGCTAATATCATGATTTTCTATCTTCAGATCACCCTGATGGAAGCAATTTTGCCAAGCTGTTTGTTGGATCTGTTCCAAGGACAGCAACAGAAGAAGAGGTTAGCCTTAAGTATTCATTAAATAGGTTTCCAACTAAGCAATCAATCTGAATAAGGCTTTTTAGGTTCATGATAGAACTCAAAATCTTATAAGTTATAAAATGTTGTGGCCTTTTGGATCCTCACTTGGTTAAGTCTTAACTCTGACGTGGCATATTGTAGGTTGGATAGATTTTTATTGTTGAGAGGTTTGGTAACATCTTTGAAGGGATGGGTTAATGTTACTTCATAGAGTTGTCTTGCATAATCGTTCCATTAGTATCAATTGGCTTAGCTAGGCAGGCTGTTATTCATTTGGATTTGAAAACATACAGCTATGTGATTCTCCCTTTAAGGTGAAACTCCCCCAGTGAGCGAGTGGGTAGCTTTTGGACAGTTTTAAATTCACGAAGGATTTAGCATGATTCTTAATTAAGAAATTGAAAATTTATTGTCTATGGGTATGTGCACCTTAATTAGCACAAAATTATGCATTGTTTGCTAATTGGGAGGATTTGAGTTGGAGAGGTAGAAGATTCGAGTCAAGTGGGCTCAATAGGGTAATTCTCACAATGCCATTTTTTATAGACTAGATTGCCAATTTTAAGAAGAGAGAAACATAATTGATTCTCTTGTCATGGAGGATGGTGTCGATGTGAGAGAAACATATATAGGGAGATCCTCTTGTTCAACTTTTCTCCCTTTCTGTGGCTCCCCAAAATTTCTGTGATGTTGATGGCCTTGATTGGTAGCCCATTTATATTAGGAATAAGAAGCTCTAGAGTGCCCTTTCACATTGGAAGAGATTATGAAAGTGTTGTTTTATTTTTAGGGTTCTAAAGCTCTCAGACCTTGATGGTTATTTGATGGCCTTATTAAAGTATATTTGGGATGTTATGTTATCTTATTGGATTCTCTCAAGGTGTTTGGTGAGTTGCACGAGAGGGGGACTGTCATCAAATTATTAATGTTTTGCCTATTCTCTTCAATCTTTTTCTATTTAAAAGTTTTTCCATTCATCTTTCATGTACTTTTGAAGAGGGTTTGTATCTCATAAATTCCATTTTAGAAGGGCTTTGTTTGACTAACAAATGCTTGAGCTTTCCTCCCTTCCATTTGTCATTCAAAGGGTTTGATTTAGACTTGAAGTGAAGAATAGTCGTATTAGATCTCTCGAACTTTTTCGCTCTCTTGTAAGTTCTACATTTTCGCTTGTTTTTCTTTCTTGTCTTCTTCTCCTTTCATCACGTAGCTCTGGAAGGTTAACATCTTGAGGAAGGTGTTATTTTTTGTATCATTGCCCTTGGGAGGCTTGATACTGCTGATTTCTTTCAGTGATCAATCATTGCCCATGATACTGCATTACTGCTTGGATCATGGTGGTGGGTTCTTTGTAAGCAAGCAAAGAAGCATTTGGCCGTATCATTTTGTTTGCCTGGTTGTGGGAGAAATTCTTCTAGACATTTGATTGTTCCTCCTCAAAGATGTTATGTTATGATGGAGGAAGTTGTCTTACACCTTTTGTTTCTGGACAAACATCTTTTGTGGAAAGCTAGGTTTTGTGCTATCCTTCTTGGGATGTATGATTTGAGAGAAATGGGAGGATTTGAGATAGTATTAGGGGTTCTTGGAAAAATGTTTTAGTTCGTTTTGGGTTCATGTGATGTGACCAAGTCCTTTTTGTGATTGTCCTTCATTTGGTTGTACTTTGATTCTTCTTCATAAAAATAGGTTTCTTTTCTAAAAATTTGCTTATTTGACACCAGATTCGCCCATTGTTTGAAGAACATGGAAATGTGATTGAAGTAGCTTTGATAAAGGATAAGAGAACAGGCCAGCAACAAGGTAAGCATAACTTCTACTTTGTATGAATCACTTTTGGTTCATACGCATGTTATTTCAGGTTTTGAGAGGCTCGAAGAAATCGTGAGCTCGTCTCAGTTTGTTTTTGCAACAAGTTTGGTGCTTGTTGGTTTTCGTTGCAATCCTATCTTTTTGTCCATCATGTCAAACAAGAGGAAGACAAGGCATGTAAACCTGCTA

mRNA sequence

TCCAAGCTGGATAGACACAGAGGAGACCGCTATGGCCATGGCTCCGGCCCCGACCGCCACTCCGGGCCTCCTTCTCGCTTCTCCGACTCCCCCCTCAACCATCACGACACTCGCCGTACTCCCCTTCCCGGACCCCACCGTCGCCCCTTCGACAGCCCACCCCGCTACTCCACTCCCCCTCCCGCTCCCGCTCCCGCCGGTTTTCGCCCAATGGGAGCTCCTGCAGGGGGTTTCCGTCCAATCCCCGGCTCTGCCGCTGCCTTTGGCTCCAACTTCCAGCCCCCACCTGTTGCAGGTCAGAAACGAGGCTATCCCTTCTCCGCCCGTGGAAGTTCTCCAGATCACCCTGATGGAAGCAATTTTGCCAAGCTGTTTGTTGGATCTGTTCCAAGGACAGCAACAGAAGAAGAGATTCGCCCATTGTTTGAAGAACATGGAAATGTGATTGAAGTAGCTTTGATAAAGGATAAGAGAACAGGCCAGCAACAAGGTTTTGAGAGGCTCGAAGAAATCGTGAGCTCGTCTCAGTTTGTTTTTGCAACAAGTTTGGTGCTTGTTGGTTTTCGTTGCAATCCTATCTTTTTGTCCATCATGTCAAACAAGAGGAAGACAAGGCATGTAAACCTGCTA

Coding sequence (CDS)

TCCAAGCTGGATAGACACAGAGGAGACCGCTATGGCCATGGCTCCGGCCCCGACCGCCACTCCGGGCCTCCTTCTCGCTTCTCCGACTCCCCCCTCAACCATCACGACACTCGCCGTACTCCCCTTCCCGGACCCCACCGTCGCCCCTTCGACAGCCCACCCCGCTACTCCACTCCCCCTCCCGCTCCCGCTCCCGCCGGTTTTCGCCCAATGGGAGCTCCTGCAGGGGGTTTCCGTCCAATCCCCGGCTCTGCCGCTGCCTTTGGCTCCAACTTCCAGCCCCCACCTGTTGCAGGTCAGAAACGAGGCTATCCCTTCTCCGCCCGTGGAAGTTCTCCAGATCACCCTGATGGAAGCAATTTTGCCAAGCTGTTTGTTGGATCTGTTCCAAGGACAGCAACAGAAGAAGAGATTCGCCCATTGTTTGAAGAACATGGAAATGTGATTGAAGTAGCTTTGATAAAGGATAAGAGAACAGGCCAGCAACAAGGTTTTGAGAGGCTCGAAGAAATCGTGAGCTCGTCTCAGTTTGTTTTTGCAACAAGTTTGGTGCTTGTTGGTTTTCGTTGCAATCCTATCTTTTTGTCCATCATGTCAAACAAGAGGAAGACAAGGCATGTAAACCTGCTA

Protein sequence

SKLDRHRGDRYGHGSGPDRHSGPPSRFSDSPLNHHDTRRTPLPGPHRRPFDSPPRYSTPPPAPAPAGFRPMGAPAGGFRPIPGSAAAFGSNFQPPPVAGQKRGYPFSARGSSPDHPDGSNFAKLFVGSVPRTATEEEIRPLFEEHGNVIEVALIKDKRTGQQQGFERLEEIVSSSQFVFATSLVLVGFRCNPIFLSIMSNKRKTRHVNLL

Homology

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BLAST of MS019359 vs. NCBI nr
Match: KAG6594021.1 (Flowering time control protein FCA, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 239.2 bits (609), Expect = 3.2e-59
Identity = 132/175 (75.43%), Postives = 138/175 (78.86%), Query Frame = 0


Query: 1   SKLDRHRGDRYG--HGSGPDRHSGPPSRFSDSPLNHHDTRRTPLP---------GPHRRP 60
           +KLDRHRGDRYG    S P RHS  PSRFSDSP+NHHD+RR+P           G HRRP
Sbjct: 88  AKLDRHRGDRYGPDQDSHPHRHSAAPSRFSDSPVNHHDSRRSPNKFSGAVGGGGGGHRRP 147

Query: 61  FDSPPRYSTPPPAPAPAGFRPMGAPAGGFRPIPGSAAAFGSNFQPPPVAGQKRGYPFSAR 120
           FDSPPRYST   A   A FRPMG  AGGFRPIPG+   FGSNFQPPPVAGQKRGY FS R
Sbjct: 148 FDSPPRYSTSGGA---ADFRPMGT-AGGFRPIPGTGGGFGSNFQPPPVAGQKRGYLFSGR 207

Query: 121 GSSPDHPDGSNFAKLFVGSVPRTATEEEIRPLFEEHGNVIEVALIKDKRTGQQQG 165
           GSSPDH DGS+FAKLFVGSVPRT TEE IRPLFEEHGNVIEVALIKDKRTGQQQG
Sbjct: 208 GSSPDHQDGSSFAKLFVGSVPRTITEENIRPLFEEHGNVIEVALIKDKRTGQQQG 258

[Close]

BLAST of MS019359 vs. NCBI nr
Match: XP_023000619.1 (flowering time control protein FCA-like [Cucurbita maxima])

HSP 1 Score: 231.1 bits (588), Expect = 8.8e-57
Identity = 128/174 (73.56%), Postives = 136/174 (78.16%), Query Frame = 0


Query: 1   SKLDRHRGDRYG--HGSGPDRHSGPPSRFSDSPLNHHDTRRTPLP--------GPHRRPF 60
           +KLDRHRGDRYG    S P RHS  PSRFSDSP+NHH +RR+P          G HRRPF
Sbjct: 130 AKLDRHRGDRYGPDQDSHPYRHSAAPSRFSDSPVNHHYSRRSPNKFSGSVGGGGGHRRPF 189

Query: 61  DSPPRYSTPPPAPAPAGFRPMGAPAGGFRPIPGSAAAFGSNFQPPPVAGQKRGYPFSARG 120
           DSPP YSTP  A   A FRP+G    GFRPIPG+   FGSNFQPPPVAGQKRGYPFS  G
Sbjct: 190 DSPPPYSTPVGA---ADFRPIGT-GEGFRPIPGTGGGFGSNFQPPPVAGQKRGYPFSGCG 249

Query: 121 SSPDHPDGSNFAKLFVGSVPRTATEEEIRPLFEEHGNVIEVALIKDKRTGQQQG 165
           SSPDH DGS+FAKLFVGSVPRT TEE+IRPLFEEHGNVIEVALIKDKRTGQQQG
Sbjct: 250 SSPDHQDGSSFAKLFVGSVPRTITEEDIRPLFEEHGNVIEVALIKDKRTGQQQG 299

[Close]

BLAST of MS019359 vs. NCBI nr
Match: KAG7013692.1 (Flowering time control protein FCA [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 192.6 bits (488), Expect = 3.5e-45
Identity = 102/143 (71.33%), Postives = 113/143 (79.02%), Query Frame = 0


Query: 32  LNHHDTRRTP------LPGPHRRPFDSPPRYSTPPPAPAPAGFRPMGAPAGGFRPIPGSA 91
           +NH D+R +P      + G +RRPFDSPPR+ST    P  A FRPMG   GGFRPIPG+ 
Sbjct: 1   MNHQDSRWSPNNFRGGVSGGNRRPFDSPPRFST----PGAANFRPMGT-GGGFRPIPGTG 60

Query: 92  AAFGSNFQPPPVAGQKRGYPFSARGSSPDHPDGSNFAKLFVGSVPRTATEEEIRPLFEEH 151
             FGS+FQPPPVAGQKRGYPF+ RGSSPDH D S+FAKLFVGSVPRT TEE+IRPLFEEH
Sbjct: 61  GGFGSSFQPPPVAGQKRGYPFAGRGSSPDHSDRSSFAKLFVGSVPRTVTEEDIRPLFEEH 120

Query: 152 GNVIEVALIKDKRTGQQQGFERL 169
           GNVIEVALIKDKRTGQQQG   L
Sbjct: 121 GNVIEVALIKDKRTGQQQGKHNL 138

[Close]

BLAST of MS019359 vs. NCBI nr
Match: XP_022959134.1 (flowering time control protein FCA-like isoform X4 [Cucurbita moschata])

HSP 1 Score: 192.2 bits (487), Expect = 4.5e-45
Identity = 101/139 (72.66%), Postives = 112/139 (80.58%), Query Frame = 0


Query: 32  LNHHDTRRTP------LPGPHRRPFDSPPRYSTPPPAPAPAGFRPMGAPAGGFRPIPGSA 91
           +NH D+R +P      + G +RRPFDSPPR+ST    P  A FRPMG   GGFRPIPG+ 
Sbjct: 1   MNHQDSRWSPNNFRGGVSGGNRRPFDSPPRFST----PGAANFRPMGT-GGGFRPIPGTG 60

Query: 92  AAFGSNFQPPPVAGQKRGYPFSARGSSPDHPDGSNFAKLFVGSVPRTATEEEIRPLFEEH 151
             FGS+FQPPPVAGQKRGYPF+ RGSSPDH D S+FAKLFVGSVPRT TEE+IRPLFEEH
Sbjct: 61  GGFGSSFQPPPVAGQKRGYPFAGRGSSPDHSDRSSFAKLFVGSVPRTVTEEDIRPLFEEH 120

Query: 152 GNVIEVALIKDKRTGQQQG 165
           GNVIEVALIKDKRTGQQQG
Sbjct: 121 GNVIEVALIKDKRTGQQQG 134

[Close]

BLAST of MS019359 vs. NCBI nr
Match: XP_022959133.1 (flowering time control protein FCA-like isoform X3 [Cucurbita moschata])

HSP 1 Score: 192.2 bits (487), Expect = 4.5e-45
Identity = 101/139 (72.66%), Postives = 112/139 (80.58%), Query Frame = 0


Query: 32  LNHHDTRRTP------LPGPHRRPFDSPPRYSTPPPAPAPAGFRPMGAPAGGFRPIPGSA 91
           +NH D+R +P      + G +RRPFDSPPR+ST    P  A FRPMG   GGFRPIPG+ 
Sbjct: 1   MNHQDSRWSPNNFRGGVSGGNRRPFDSPPRFST----PGAANFRPMGT-GGGFRPIPGTG 60

Query: 92  AAFGSNFQPPPVAGQKRGYPFSARGSSPDHPDGSNFAKLFVGSVPRTATEEEIRPLFEEH 151
             FGS+FQPPPVAGQKRGYPF+ RGSSPDH D S+FAKLFVGSVPRT TEE+IRPLFEEH
Sbjct: 61  GGFGSSFQPPPVAGQKRGYPFAGRGSSPDHSDRSSFAKLFVGSVPRTVTEEDIRPLFEEH 120

Query: 152 GNVIEVALIKDKRTGQQQG 165
           GNVIEVALIKDKRTGQQQG
Sbjct: 121 GNVIEVALIKDKRTGQQQG 134

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BLAST of MS019359 vs. ExPASy Swiss-Prot
Match: O04425 (Flowering time control protein FCA OS=Arabidopsis thaliana OX=3702 GN=FCA PE=1 SV=3)

HSP 1 Score: 99.4 bits (246), Expect = 5.2e-20
Identity = 74/178 (41.57%), Postives = 87/178 (48.88%), Query Frame = 0


Query: 21  SGPPSRFSDSPLNHHDTRRTPLPGPHRRPFDSPPRYSTPPPAPAPAGFRPMGAPAG---- 80
           +GPP R    P+           GPH      P  ++         GFRPMG   G    
Sbjct: 2   NGPPDRVDFKPM-----------GPHHGGSFRPMGFAYDD------GFRPMGPNGGVGGE 61

Query: 81  GFRPIPGSAAAFGSNFQP----------------------------PPVAGQKRGYPFSA 140
           G R I G+   + + + P                             P++GQKRGYP S 
Sbjct: 62  GTRSIVGARYNYPAKYPPSESPDRRRFIGKAMESDYSVRPTTPPVQQPLSGQKRGYPISD 121

Query: 141 RGS--SPDHPDGSNFAKLFVGSVPRTATEEEIRPLFEEHGNVIEVALIKDKRTGQQQG 165
            GS    D  D S+  KLFVGSVPRTATEEEIRP FE+HGNV+EVALIKDKRTGQQQG
Sbjct: 122 HGSFTGTDVSDRSSTVKLFVGSVPRTATEEEIRPYFEQHGNVLEVALIKDKRTGQQQG 162

[Close]

BLAST of MS019359 vs. ExPASy Swiss-Prot
Match: B8BCZ8 (Flowering time control protein FCA OS=Oryza sativa subsp. indica OX=39946 GN=FCA PE=3 SV=2)

HSP 1 Score: 90.5 bits (223), Expect = 2.4e-17
Identity = 50/102 (49.02%), Postives = 67/102 (65.69%), Query Frame = 0


Query: 68  FRPMGAPA-----GGFRPIPGSAAAFGSNFQPPPVAGQKRGYPFSARGSSPDHPDGSNFA 127
           F P   P+     GG+R   G    +G      P +G +  Y  S RG   DH + +N+ 
Sbjct: 71  FHPYRGPSDHSGGGGYR--SGGGGEYGE-----PGSGPRHRYG-SGRGDHSDHDNRNNYV 130

Query: 128 KLFVGSVPRTATEEEIRPLFEEHGNVIEVALIKDKRTGQQQG 165
           KLF+GSVPRTATE+++RPLFEEHG+V+EVALIKD++TG+QQG
Sbjct: 131 KLFIGSVPRTATEDDVRPLFEEHGDVVEVALIKDRKTGEQQG 164

[Close]

BLAST of MS019359 vs. ExPASy Swiss-Prot
Match: Q6K271 (Flowering time control protein FCA OS=Oryza sativa subsp. japonica OX=39947 GN=FCA PE=1 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 2.4e-17
Identity = 50/102 (49.02%), Postives = 67/102 (65.69%), Query Frame = 0


Query: 68  FRPMGAPA-----GGFRPIPGSAAAFGSNFQPPPVAGQKRGYPFSARGSSPDHPDGSNFA 127
           F P   P+     GG+R   G    +G      P +G +  Y  S RG   DH + +N+ 
Sbjct: 71  FHPYRGPSDHSGGGGYR--SGGGGEYGE-----PGSGPRHRYG-SGRGDHSDHDNRNNYV 130

Query: 128 KLFVGSVPRTATEEEIRPLFEEHGNVIEVALIKDKRTGQQQG 165
           KLF+GSVPRTATE+++RPLFEEHG+V+EVALIKD++TG+QQG
Sbjct: 131 KLFIGSVPRTATEDDVRPLFEEHGDVVEVALIKDRKTGEQQG 164

[Close]

BLAST of MS019359 vs. ExPASy Swiss-Prot
Match: A0JM51 (CUGBP Elav-like family member 5 OS=Xenopus tropicalis OX=8364 GN=celf5 PE=2 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 2.5e-06
Identity = 31/94 (32.98%), Postives = 45/94 (47.87%), Query Frame = 0


Query: 93  QPPPVAGQKRGYPFSARGSSPDHPDGS---NFAKLFVGSVPRTATEEEIRPLFEEHGNVI 152
           Q PP   Q R  P S         D     +  KLFVG +PR   E++++PLFE+ G + 
Sbjct: 15  QHPPQQQQPRACPMSGPEPPAQQSDSMKDLDAIKLFVGQIPRNLEEKDLKPLFEQFGKIY 74

Query: 153 EVALIKDKRTGQQQGFERLEEIVSSSQFVFATSL 184
           E+ ++KD+ TG  +G   L      S     T+L
Sbjct: 75  ELTVLKDRYTGMHKGCAFLTYCARDSAIKAQTAL 108

[Close]

BLAST of MS019359 vs. ExPASy Swiss-Prot
Match: Q6PF35 (CUGBP Elav-like family member 1-B OS=Xenopus laevis OX=8355 GN=cugbp1-b PE=2 SV=1)

HSP 1 Score: 52.8 bits (125), Expect = 5.6e-06
Identity = 24/51 (47.06%), Postives = 37/51 (72.55%), Query Frame = 0


Query: 113 PDHPDGSNFAKLFVGSVPRTATEEEIRPLFEEHGNVIEVALIKDKRTGQQQ 164
           PDHPD S+  K+FVG VPR+ +E+E+R LFE++G V E+ +++D+     Q
Sbjct: 8   PDHPD-SDSIKMFVGQVPRSWSEKELRELFEQYGAVYEINVLRDRSQNPPQ 57

[Close]

BLAST of MS019359 vs. ExPASy TrEMBL
Match: A0A6J1KKH9 (flowering time control protein FCA-like OS=Cucurbita maxima OX=3661 GN=LOC111494860 PE=4 SV=1)

HSP 1 Score: 231.1 bits (588), Expect = 4.3e-57
Identity = 128/174 (73.56%), Postives = 136/174 (78.16%), Query Frame = 0


Query: 1   SKLDRHRGDRYG--HGSGPDRHSGPPSRFSDSPLNHHDTRRTPLP--------GPHRRPF 60
           +KLDRHRGDRYG    S P RHS  PSRFSDSP+NHH +RR+P          G HRRPF
Sbjct: 130 AKLDRHRGDRYGPDQDSHPYRHSAAPSRFSDSPVNHHYSRRSPNKFSGSVGGGGGHRRPF 189

Query: 61  DSPPRYSTPPPAPAPAGFRPMGAPAGGFRPIPGSAAAFGSNFQPPPVAGQKRGYPFSARG 120
           DSPP YSTP  A   A FRP+G    GFRPIPG+   FGSNFQPPPVAGQKRGYPFS  G
Sbjct: 190 DSPPPYSTPVGA---ADFRPIGT-GEGFRPIPGTGGGFGSNFQPPPVAGQKRGYPFSGCG 249

Query: 121 SSPDHPDGSNFAKLFVGSVPRTATEEEIRPLFEEHGNVIEVALIKDKRTGQQQG 165
           SSPDH DGS+FAKLFVGSVPRT TEE+IRPLFEEHGNVIEVALIKDKRTGQQQG
Sbjct: 250 SSPDHQDGSSFAKLFVGSVPRTITEEDIRPLFEEHGNVIEVALIKDKRTGQQQG 299

[Close]

BLAST of MS019359 vs. ExPASy TrEMBL
Match: A0A6J1H3Q0 (flowering time control protein FCA-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111460217 PE=4 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 2.2e-45
Identity = 101/139 (72.66%), Postives = 112/139 (80.58%), Query Frame = 0


Query: 32  LNHHDTRRTP------LPGPHRRPFDSPPRYSTPPPAPAPAGFRPMGAPAGGFRPIPGSA 91
           +NH D+R +P      + G +RRPFDSPPR+ST    P  A FRPMG   GGFRPIPG+ 
Sbjct: 1   MNHQDSRWSPNNFRGGVSGGNRRPFDSPPRFST----PGAANFRPMGT-GGGFRPIPGTG 60

Query: 92  AAFGSNFQPPPVAGQKRGYPFSARGSSPDHPDGSNFAKLFVGSVPRTATEEEIRPLFEEH 151
             FGS+FQPPPVAGQKRGYPF+ RGSSPDH D S+FAKLFVGSVPRT TEE+IRPLFEEH
Sbjct: 61  GGFGSSFQPPPVAGQKRGYPFAGRGSSPDHSDRSSFAKLFVGSVPRTVTEEDIRPLFEEH 120

Query: 152 GNVIEVALIKDKRTGQQQG 165
           GNVIEVALIKDKRTGQQQG
Sbjct: 121 GNVIEVALIKDKRTGQQQG 134

[Close]

BLAST of MS019359 vs. ExPASy TrEMBL
Match: A0A6J1H400 (flowering time control protein FCA-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111460217 PE=4 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 2.2e-45
Identity = 101/139 (72.66%), Postives = 112/139 (80.58%), Query Frame = 0


Query: 32  LNHHDTRRTP------LPGPHRRPFDSPPRYSTPPPAPAPAGFRPMGAPAGGFRPIPGSA 91
           +NH D+R +P      + G +RRPFDSPPR+ST    P  A FRPMG   GGFRPIPG+ 
Sbjct: 1   MNHQDSRWSPNNFRGGVSGGNRRPFDSPPRFST----PGAANFRPMGT-GGGFRPIPGTG 60

Query: 92  AAFGSNFQPPPVAGQKRGYPFSARGSSPDHPDGSNFAKLFVGSVPRTATEEEIRPLFEEH 151
             FGS+FQPPPVAGQKRGYPF+ RGSSPDH D S+FAKLFVGSVPRT TEE+IRPLFEEH
Sbjct: 61  GGFGSSFQPPPVAGQKRGYPFAGRGSSPDHSDRSSFAKLFVGSVPRTVTEEDIRPLFEEH 120

Query: 152 GNVIEVALIKDKRTGQQQG 165
           GNVIEVALIKDKRTGQQQG
Sbjct: 121 GNVIEVALIKDKRTGQQQG 134

[Close]

BLAST of MS019359 vs. ExPASy TrEMBL
Match: A0A6J1H531 (flowering time control protein FCA-like isoform X3 OS=Cucurbita moschata OX=3662 GN=LOC111460217 PE=4 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 2.2e-45
Identity = 101/139 (72.66%), Postives = 112/139 (80.58%), Query Frame = 0


Query: 32  LNHHDTRRTP------LPGPHRRPFDSPPRYSTPPPAPAPAGFRPMGAPAGGFRPIPGSA 91
           +NH D+R +P      + G +RRPFDSPPR+ST    P  A FRPMG   GGFRPIPG+ 
Sbjct: 1   MNHQDSRWSPNNFRGGVSGGNRRPFDSPPRFST----PGAANFRPMGT-GGGFRPIPGTG 60

Query: 92  AAFGSNFQPPPVAGQKRGYPFSARGSSPDHPDGSNFAKLFVGSVPRTATEEEIRPLFEEH 151
             FGS+FQPPPVAGQKRGYPF+ RGSSPDH D S+FAKLFVGSVPRT TEE+IRPLFEEH
Sbjct: 61  GGFGSSFQPPPVAGQKRGYPFAGRGSSPDHSDRSSFAKLFVGSVPRTVTEEDIRPLFEEH 120

Query: 152 GNVIEVALIKDKRTGQQQG 165
           GNVIEVALIKDKRTGQQQG
Sbjct: 121 GNVIEVALIKDKRTGQQQG 134

[Close]

BLAST of MS019359 vs. ExPASy TrEMBL
Match: A0A6J1H743 (flowering time control protein FCA-like isoform X4 OS=Cucurbita moschata OX=3662 GN=LOC111460217 PE=4 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 2.2e-45
Identity = 101/139 (72.66%), Postives = 112/139 (80.58%), Query Frame = 0


Query: 32  LNHHDTRRTP------LPGPHRRPFDSPPRYSTPPPAPAPAGFRPMGAPAGGFRPIPGSA 91
           +NH D+R +P      + G +RRPFDSPPR+ST    P  A FRPMG   GGFRPIPG+ 
Sbjct: 1   MNHQDSRWSPNNFRGGVSGGNRRPFDSPPRFST----PGAANFRPMGT-GGGFRPIPGTG 60

Query: 92  AAFGSNFQPPPVAGQKRGYPFSARGSSPDHPDGSNFAKLFVGSVPRTATEEEIRPLFEEH 151
             FGS+FQPPPVAGQKRGYPF+ RGSSPDH D S+FAKLFVGSVPRT TEE+IRPLFEEH
Sbjct: 61  GGFGSSFQPPPVAGQKRGYPFAGRGSSPDHSDRSSFAKLFVGSVPRTVTEEDIRPLFEEH 120

Query: 152 GNVIEVALIKDKRTGQQQG 165
           GNVIEVALIKDKRTGQQQG
Sbjct: 121 GNVIEVALIKDKRTGQQQG 134

[Close]

BLAST of MS019359 vs. TAIR 10
Match: AT4G16280.4 (RNA binding;abscisic acid binding )

HSP 1 Score: 104.0 bits (258), Expect = 1.5e-22
Identity = 53/71 (74.65%), Postives = 58/71 (81.69%), Query Frame = 0


Query: 96  PVAGQKRGYPFSARGS--SPDHPDGSNFAKLFVGSVPRTATEEEIRPLFEEHGNVIEVAL 155
           P++GQKRGYP S  GS    D  D S+  KLFVGSVPRTATEEEIRP FE+HGNV+EVAL
Sbjct: 17  PLSGQKRGYPISDHGSFTGTDVSDRSSTVKLFVGSVPRTATEEEIRPYFEQHGNVLEVAL 76

Query: 156 IKDKRTGQQQG 165
           IKDKRTGQQQG
Sbjct: 77  IKDKRTGQQQG 87

[Close]

BLAST of MS019359 vs. TAIR 10
Match: AT4G16280.2 (RNA binding;abscisic acid binding )

HSP 1 Score: 99.4 bits (246), Expect = 3.7e-21
Identity = 74/178 (41.57%), Postives = 87/178 (48.88%), Query Frame = 0


Query: 21  SGPPSRFSDSPLNHHDTRRTPLPGPHRRPFDSPPRYSTPPPAPAPAGFRPMGAPAG---- 80
           +GPP R    P+           GPH      P  ++         GFRPMG   G    
Sbjct: 2   NGPPDRVDFKPM-----------GPHHGGSFRPMGFAYDD------GFRPMGPNGGVGGE 61

Query: 81  GFRPIPGSAAAFGSNFQP----------------------------PPVAGQKRGYPFSA 140
           G R I G+   + + + P                             P++GQKRGYP S 
Sbjct: 62  GTRSIVGARYNYPAKYPPSESPDRRRFIGKAMESDYSVRPTTPPVQQPLSGQKRGYPISD 121

Query: 141 RGS--SPDHPDGSNFAKLFVGSVPRTATEEEIRPLFEEHGNVIEVALIKDKRTGQQQG 165
            GS    D  D S+  KLFVGSVPRTATEEEIRP FE+HGNV+EVALIKDKRTGQQQG
Sbjct: 122 HGSFTGTDVSDRSSTVKLFVGSVPRTATEEEIRPYFEQHGNVLEVALIKDKRTGQQQG 162

[Close]

BLAST of MS019359 vs. TAIR 10
Match: AT4G16280.3 (RNA binding;abscisic acid binding )

HSP 1 Score: 99.4 bits (246), Expect = 3.7e-21
Identity = 74/178 (41.57%), Postives = 87/178 (48.88%), Query Frame = 0


Query: 21  SGPPSRFSDSPLNHHDTRRTPLPGPHRRPFDSPPRYSTPPPAPAPAGFRPMGAPAG---- 80
           +GPP R    P+           GPH      P  ++         GFRPMG   G    
Sbjct: 2   NGPPDRVDFKPM-----------GPHHGGSFRPMGFAYDD------GFRPMGPNGGVGGE 61

Query: 81  GFRPIPGSAAAFGSNFQP----------------------------PPVAGQKRGYPFSA 140
           G R I G+   + + + P                             P++GQKRGYP S 
Sbjct: 62  GTRSIVGARYNYPAKYPPSESPDRRRFIGKAMESDYSVRPTTPPVQQPLSGQKRGYPISD 121

Query: 141 RGS--SPDHPDGSNFAKLFVGSVPRTATEEEIRPLFEEHGNVIEVALIKDKRTGQQQG 165
            GS    D  D S+  KLFVGSVPRTATEEEIRP FE+HGNV+EVALIKDKRTGQQQG
Sbjct: 122 HGSFTGTDVSDRSSTVKLFVGSVPRTATEEEIRPYFEQHGNVLEVALIKDKRTGQQQG 162

[Close]

BLAST of MS019359 vs. TAIR 10
Match: AT3G13224.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 50.4 bits (119), Expect = 2.0e-06
Identity = 22/64 (34.38%), Postives = 39/64 (60.94%), Query Frame = 0


Query: 123 KLFVGSVPRTATEEEIRPLFEEHGNVIEVALIKDKRTGQQQGF--------ERLEEIVSS 179
           K+FVG +P T TE+E++  F ++GNV+E  +I+D  T + +GF        E ++E++S 
Sbjct: 110 KIFVGGIPSTVTEDELKDFFAKYGNVVEHQVIRDHETNRSRGFGFVIFDSEEVVDELLSK 169

[Close]

BLAST of MS019359 vs. TAIR 10
Match: AT3G13224.2 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 50.4 bits (119), Expect = 2.0e-06
Identity = 22/64 (34.38%), Postives = 39/64 (60.94%), Query Frame = 0


Query: 123 KLFVGSVPRTATEEEIRPLFEEHGNVIEVALIKDKRTGQQQGF--------ERLEEIVSS 179
           K+FVG +P T TE+E++  F ++GNV+E  +I+D  T + +GF        E ++E++S 
Sbjct: 110 KIFVGGIPSTVTEDELKDFFAKYGNVVEHQVIRDHETNRSRGFGFVIFDSEEVVDELLSK 169

The following BLAST results are available for this feature:

BLAST of MS019359 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6594021.1	3.2e-59	75.43	Flowering time control protein FCA, partial [Cucurbita argyrosperma subsp. soror...	[more]
XP_023000619.1	8.8e-57	73.56	flowering time control protein FCA-like [Cucurbita maxima]	[more]
KAG7013692.1	3.5e-45	71.33	Flowering time control protein FCA [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_022959134.1	4.5e-45	72.66	flowering time control protein FCA-like isoform X4 [Cucurbita moschata]	[more]
XP_022959133.1	4.5e-45	72.66	flowering time control protein FCA-like isoform X3 [Cucurbita moschata]	[more]

BLAST of MS019359 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O04425	5.2e-20	41.57	Flowering time control protein FCA OS=Arabidopsis thaliana OX=3702 GN=FCA PE=1 S...	[more]
B8BCZ8	2.4e-17	49.02	Flowering time control protein FCA OS=Oryza sativa subsp. indica OX=39946 GN=FCA...	[more]
Q6K271	2.4e-17	49.02	Flowering time control protein FCA OS=Oryza sativa subsp. japonica OX=39947 GN=F...	[more]
A0JM51	2.5e-06	32.98	CUGBP Elav-like family member 5 OS=Xenopus tropicalis OX=8364 GN=celf5 PE=2 SV=1	[more]
Q6PF35	5.6e-06	47.06	CUGBP Elav-like family member 1-B OS=Xenopus laevis OX=8355 GN=cugbp1-b PE=2 SV=...	[more]

BLAST of MS019359 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1KKH9	4.3e-57	73.56	flowering time control protein FCA-like OS=Cucurbita maxima OX=3661 GN=LOC111494...	[more]
A0A6J1H3Q0	2.2e-45	72.66	flowering time control protein FCA-like isoform X2 OS=Cucurbita moschata OX=3662...	[more]
A0A6J1H400	2.2e-45	72.66	flowering time control protein FCA-like isoform X1 OS=Cucurbita moschata OX=3662...	[more]
A0A6J1H531	2.2e-45	72.66	flowering time control protein FCA-like isoform X3 OS=Cucurbita moschata OX=3662...	[more]
A0A6J1H743	2.2e-45	72.66	flowering time control protein FCA-like isoform X4 OS=Cucurbita moschata OX=3662...	[more]

BLAST of MS019359 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G16280.4	1.5e-22	74.65	RNA binding;abscisic acid binding	[more]
AT4G16280.2	3.7e-21	41.57	RNA binding;abscisic acid binding	[more]
AT4G16280.3	3.7e-21	41.57	RNA binding;abscisic acid binding	[more]
AT3G13224.1	2.0e-06	34.38	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT3G13224.2	2.0e-06	34.38	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 123..187 e-value: 0.0018 score: 27.5
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 124..165 e-value: 6.7E-8 score: 32.3
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 122..165 score: 10.803629
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 120..165 e-value: 6.5E-12 score: 47.4
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..119
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..16
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 31..45
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 46..68
None	No IPR available	PANTHER	PTHR48034	TRANSFORMER-2 SEX-DETERMINING PROTEIN-RELATED	coord: 4..164
None	No IPR available	PANTHER	PTHR48034:SF13	FCA	coord: 4..164
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 105..165

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS019359.1	MS019359.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding