MS019320 (gene) Bitter gourd (TR) v1

Overview
NameMS019320
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionGATA transcription factor
Locationscaffold611: 345635 .. 345905 (+)
RNA-Seq ExpressionMS019320
SyntenyMS019320
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
AGGAAGACCTGCGCCGATTGCGGGACGACCAAAACTCCTCTATGGCGCGGAGGTCCGGCCGGCCCTAAGGTGATTTGTTCATCTCCATCTCTGAACTTGATCACATACTTTGTTTGGTTCTCCATTTCTGATGCTCGATTTTAACGATCGAAGCTTTCTTTCGCAGTCTCTCTGCAATGCGTGTGGGATCCGAAGCCGGAAAAAGAGGAGGTCGCTTCTAGGTTTGAACAGAGGGAGCGAAGTGGAGAGAAAAAACAAAGGAAGCAGTAAC

mRNA sequence

AGGAAGACCTGCGCCGATTGCGGGACGACCAAAACTCCTCTATGGCGCGGAGGTCCGGCCGGCCCTAAGTCTCTCTGCAATGCGTGTGGGATCCGAAGCCGGAAAAAGAGGAGGTCGCTTCTAGGTTTGAACAGAGGGAGCGAAGTGGAGAGAAAAAACAAAGGAAGCAGTAAC

Coding sequence (CDS)

AGGAAGACCTGCGCCGATTGCGGGACGACCAAAACTCCTCTATGGCGCGGAGGTCCGGCCGGCCCTAAGTCTCTCTGCAATGCGTGTGGGATCCGAAGCCGGAAAAAGAGGAGGTCGCTTCTAGGTTTGAACAGAGGGAGCGAAGTGGAGAGAAAAAACAAAGGAAGCAGTAAC

Protein sequence

RKTCADCGTTKTPLWRGGPAGPKSLCNACGIRSRKKRRSLLGLNRGSEVERKNKGSSN
Homology
[Close]
BLAST of MS019320 vs. NCBI nr
Match: XP_022138518.1 (GATA transcription factor 16-like [Momordica charantia])

HSP 1 Score: 121.3 bits (303), Expect = 2.7e-24
Identity = 58/58 (100.00%), Postives = 58/58 (100.00%), Query Frame = 0 

Query: 1  RKTCADCGTTKTPLWRGGPAGPKSLCNACGIRSRKKRRSLLGLNRGSEVERKNKGSSN 59
          RKTCADCGTTKTPLWRGGPAGPKSLCNACGIRSRKKRRSLLGLNRGSEVERKNKGSSN
Sbjct: 30 RKTCADCGTTKTPLWRGGPAGPKSLCNACGIRSRKKRRSLLGLNRGSEVERKNKGSSN 87

[Close]
BLAST of MS019320 vs. NCBI nr
Match: XP_008458384.1 (PREDICTED: GATA transcription factor 16-like isoform X1 [Cucumis melo] >TYK02936.1 GATA transcription factor 16-like isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 118.6 bits (296), Expect = 1.8e-23
Identity = 56/58 (96.55%), Postives = 57/58 (98.28%), Query Frame = 0 

Query: 1  RKTCADCGTTKTPLWRGGPAGPKSLCNACGIRSRKKRRSLLGLNRGSEVERKNKGSSN 59
          +KTCADCGTTKTPLWRGGPAGPKSLCNACGIRSRKKRRSLLGLNRG EVERKNKGSSN
Sbjct: 26 KKTCADCGTTKTPLWRGGPAGPKSLCNACGIRSRKKRRSLLGLNRGGEVERKNKGSSN 83

[Close]
BLAST of MS019320 vs. NCBI nr
Match: XP_004150081.1 (GATA transcription factor 16 [Cucumis sativus] >KGN47402.1 hypothetical protein Csa_022928 [Cucumis sativus])

HSP 1 Score: 118.6 bits (296), Expect = 1.8e-23
Identity = 56/58 (96.55%), Postives = 57/58 (98.28%), Query Frame = 0 

Query: 1  RKTCADCGTTKTPLWRGGPAGPKSLCNACGIRSRKKRRSLLGLNRGSEVERKNKGSSN 59
          +KTCADCGTTKTPLWRGGPAGPKSLCNACGIRSRKKRRSLLGLNRG EVERKNKGSSN
Sbjct: 26 KKTCADCGTTKTPLWRGGPAGPKSLCNACGIRSRKKRRSLLGLNRGGEVERKNKGSSN 83

[Close]
BLAST of MS019320 vs. NCBI nr
Match: XP_008458385.1 (PREDICTED: GATA transcription factor 16-like isoform X2 [Cucumis melo])

HSP 1 Score: 118.6 bits (296), Expect = 1.8e-23
Identity = 56/58 (96.55%), Postives = 57/58 (98.28%), Query Frame = 0 

Query: 1  RKTCADCGTTKTPLWRGGPAGPKSLCNACGIRSRKKRRSLLGLNRGSEVERKNKGSSN 59
          +KTCADCGTTKTPLWRGGPAGPKSLCNACGIRSRKKRRSLLGLNRG EVERKNKGSSN
Sbjct: 7  KKTCADCGTTKTPLWRGGPAGPKSLCNACGIRSRKKRRSLLGLNRGGEVERKNKGSSN 64

[Close]
BLAST of MS019320 vs. NCBI nr
Match: XP_023548663.1 (GATA transcription factor 16-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 118.2 bits (295), Expect = 2.3e-23
Identity = 56/58 (96.55%), Postives = 58/58 (100.00%), Query Frame = 0 

Query: 1  RKTCADCGTTKTPLWRGGPAGPKSLCNACGIRSRKKRRSLLGLNRGSEVERKNKGSSN 59
          +KTCADCGTTKTPLWRGGPAGPKSLCNACGIRSRKKRRSLLGLNRGSEVERK+KGSSN
Sbjct: 30 KKTCADCGTTKTPLWRGGPAGPKSLCNACGIRSRKKRRSLLGLNRGSEVERKSKGSSN 87

[Close]
BLAST of MS019320 vs. ExPASy Swiss-Prot
Match: Q9LIB5 (GATA transcription factor 17 OS=Arabidopsis thaliana OX=3702 GN=GATA17 PE=2 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 6.3e-16
Identity = 38/57 (66.67%), Postives = 49/57 (85.96%), Query Frame = 0 

Query: 1  RKTCADCGTTKTPLWRGGPAGPKSLCNACGIRSRKKRRSLLGLNRGSEVERKNKGSS 58
          ++TC DCGT +TPLWRGGPAGPKSLCNACGI+SRKKR++ LG+   SE ++KN+ S+
Sbjct: 41 KRTCVDCGTIRTPLWRGGPAGPKSLCNACGIKSRKKRQAALGMR--SEEKKKNRKSN 95

[Close]
BLAST of MS019320 vs. ExPASy Swiss-Prot
Match: Q8LG10 (GATA transcription factor 15 OS=Arabidopsis thaliana OX=3702 GN=GATA15 PE=2 SV=2)

HSP 1 Score: 81.6 bits (200), Expect = 3.1e-15
Identity = 37/53 (69.81%), Postives = 47/53 (88.68%), Query Frame = 0 

Query: 1  RKTCADCGTTKTPLWRGGPAGPKSLCNACGIRSRKKRRSLLGLNRGSEVERKN 54
          +K+CA CGT+KTPLWRGGPAGPKSLCNACGIR+RKKRR+L+  NR  + ++K+
Sbjct: 40 KKSCAICGTSKTPLWRGGPAGPKSLCNACGIRNRKKRRTLIS-NRSEDKKKKS 91

[Close]
BLAST of MS019320 vs. ExPASy Swiss-Prot
Match: Q9FJ10 (GATA transcription factor 16 OS=Arabidopsis thaliana OX=3702 GN=GATA16 PE=2 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 4.1e-15
Identity = 40/58 (68.97%), Postives = 46/58 (79.31%), Query Frame = 0 

Query: 1  RKTCADCGTTKTPLWRGGPAGPKSLCNACGIRSRKKRRSLLGLNRGSEVERKNKGSSN 59
          +KTCADCGT+KTPLWRGGP GPKSLCNACGIR+RKKRR       G+E  +K K SS+
Sbjct: 35 KKTCADCGTSKTPLWRGGPVGPKSLCNACGIRNRKKRRG------GTEDNKKLKKSSS 86

[Close]
BLAST of MS019320 vs. ExPASy Swiss-Prot
Match: Q8LC59 (GATA transcription factor 23 OS=Arabidopsis thaliana OX=3702 GN=GATA23 PE=2 SV=2)

HSP 1 Score: 73.2 bits (178), Expect = 1.1e-12
Identity = 32/44 (72.73%), Postives = 39/44 (88.64%), Query Frame = 0 

Query: 2  KTCADCGTTKTPLWRGGPAGPKSLCNACGIRSRKKRRS-LLGLN 45
          + C++C TTKTP+WRGGP GPKSLCNACGIR RK+RRS LLG++
Sbjct: 26 RCCSECKTTKTPMWRGGPTGPKSLCNACGIRHRKQRRSELLGIH 69

[Close]
BLAST of MS019320 vs. ExPASy Swiss-Prot
Match: Q6YW48 (Protein CYTOKININ-RESPONSIVE GATA TRANSCRIPTION FACTOR 1 OS=Oryza sativa subsp. japonica OX=39947 GN=CGA1 PE=2 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 2.5e-12
Identity = 30/45 (66.67%), Postives = 34/45 (75.56%), Query Frame = 0 

Query: 2   KTCADCGTTKTPLWRGGPAGPKSLCNACGIRSRKKRRSLLGLNRG 47
           + C+DC TTKTPLWR GP GPKSLCNACGIR RK RR++     G
Sbjct: 176 RVCSDCNTTKTPLWRSGPCGPKSLCNACGIRQRKARRAMAAAANG 220

[Close]
BLAST of MS019320 vs. ExPASy TrEMBL
Match: A0A6J1CD73 (GATA transcription factor 16-like OS=Momordica charantia OX=3673 GN=LOC111009666 PE=4 SV=1)

HSP 1 Score: 121.3 bits (303), Expect = 1.3e-24
Identity = 58/58 (100.00%), Postives = 58/58 (100.00%), Query Frame = 0 

Query: 1  RKTCADCGTTKTPLWRGGPAGPKSLCNACGIRSRKKRRSLLGLNRGSEVERKNKGSSN 59
          RKTCADCGTTKTPLWRGGPAGPKSLCNACGIRSRKKRRSLLGLNRGSEVERKNKGSSN
Sbjct: 30 RKTCADCGTTKTPLWRGGPAGPKSLCNACGIRSRKKRRSLLGLNRGSEVERKNKGSSN 87

[Close]
BLAST of MS019320 vs. ExPASy TrEMBL
Match: A0A5D3BXI1 (GATA transcription factor 16-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold46G00160 PE=4 SV=1)

HSP 1 Score: 118.6 bits (296), Expect = 8.5e-24
Identity = 56/58 (96.55%), Postives = 57/58 (98.28%), Query Frame = 0 

Query: 1  RKTCADCGTTKTPLWRGGPAGPKSLCNACGIRSRKKRRSLLGLNRGSEVERKNKGSSN 59
          +KTCADCGTTKTPLWRGGPAGPKSLCNACGIRSRKKRRSLLGLNRG EVERKNKGSSN
Sbjct: 26 KKTCADCGTTKTPLWRGGPAGPKSLCNACGIRSRKKRRSLLGLNRGGEVERKNKGSSN 83

[Close]
BLAST of MS019320 vs. ExPASy TrEMBL
Match: A0A0A0KG76 (GATA-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G312540 PE=4 SV=1)

HSP 1 Score: 118.6 bits (296), Expect = 8.5e-24
Identity = 56/58 (96.55%), Postives = 57/58 (98.28%), Query Frame = 0 

Query: 1  RKTCADCGTTKTPLWRGGPAGPKSLCNACGIRSRKKRRSLLGLNRGSEVERKNKGSSN 59
          +KTCADCGTTKTPLWRGGPAGPKSLCNACGIRSRKKRRSLLGLNRG EVERKNKGSSN
Sbjct: 26 KKTCADCGTTKTPLWRGGPAGPKSLCNACGIRSRKKRRSLLGLNRGGEVERKNKGSSN 83

[Close]
BLAST of MS019320 vs. ExPASy TrEMBL
Match: A0A1S3C8C2 (GATA transcription factor 16-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103497809 PE=4 SV=1)

HSP 1 Score: 118.6 bits (296), Expect = 8.5e-24
Identity = 56/58 (96.55%), Postives = 57/58 (98.28%), Query Frame = 0 

Query: 1  RKTCADCGTTKTPLWRGGPAGPKSLCNACGIRSRKKRRSLLGLNRGSEVERKNKGSSN 59
          +KTCADCGTTKTPLWRGGPAGPKSLCNACGIRSRKKRRSLLGLNRG EVERKNKGSSN
Sbjct: 26 KKTCADCGTTKTPLWRGGPAGPKSLCNACGIRSRKKRRSLLGLNRGGEVERKNKGSSN 83

[Close]
BLAST of MS019320 vs. ExPASy TrEMBL
Match: A0A1S3C902 (GATA transcription factor 16-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC103497809 PE=4 SV=1)

HSP 1 Score: 118.6 bits (296), Expect = 8.5e-24
Identity = 56/58 (96.55%), Postives = 57/58 (98.28%), Query Frame = 0 

Query: 1  RKTCADCGTTKTPLWRGGPAGPKSLCNACGIRSRKKRRSLLGLNRGSEVERKNKGSSN 59
          +KTCADCGTTKTPLWRGGPAGPKSLCNACGIRSRKKRRSLLGLNRG EVERKNKGSSN
Sbjct: 7  KKTCADCGTTKTPLWRGGPAGPKSLCNACGIRSRKKRRSLLGLNRGGEVERKNKGSSN 64

[Close]
BLAST of MS019320 vs. TAIR 10
Match: AT4G16141.1 (GATA type zinc finger transcription factor family protein )

HSP 1 Score: 85.5 bits (210), Expect = 1.5e-17
Identity = 38/58 (65.52%), Postives = 51/58 (87.93%), Query Frame = 0 

Query: 1  RKTCADCGTTKTPLWRGGPAGPKSLCNACGIRSRKKRRSLLGLNRGSEVERKNKGSSN 59
          +KTC DCGT++TPLWRGGPAGPKSLCNACGI+SRKKR++ LG+ R  +++ K+K ++N
Sbjct: 36 KKTCVDCGTSRTPLWRGGPAGPKSLCNACGIKSRKKRQAALGI-RQDDIKIKSKSNNN 92

[Close]
BLAST of MS019320 vs. TAIR 10
Match: AT3G16870.1 (GATA transcription factor 17 )

HSP 1 Score: 84.0 bits (206), Expect = 4.5e-17
Identity = 38/57 (66.67%), Postives = 49/57 (85.96%), Query Frame = 0 

Query: 1  RKTCADCGTTKTPLWRGGPAGPKSLCNACGIRSRKKRRSLLGLNRGSEVERKNKGSS 58
          ++TC DCGT +TPLWRGGPAGPKSLCNACGI+SRKKR++ LG+   SE ++KN+ S+
Sbjct: 41 KRTCVDCGTIRTPLWRGGPAGPKSLCNACGIKSRKKRQAALGMR--SEEKKKNRKSN 95

[Close]
BLAST of MS019320 vs. TAIR 10
Match: AT3G06740.1 (GATA transcription factor 15 )

HSP 1 Score: 81.6 bits (200), Expect = 2.2e-16
Identity = 37/53 (69.81%), Postives = 47/53 (88.68%), Query Frame = 0 

Query: 1  RKTCADCGTTKTPLWRGGPAGPKSLCNACGIRSRKKRRSLLGLNRGSEVERKN 54
          +K+CA CGT+KTPLWRGGPAGPKSLCNACGIR+RKKRR+L+  NR  + ++K+
Sbjct: 40 KKSCAICGTSKTPLWRGGPAGPKSLCNACGIRNRKKRRTLIS-NRSEDKKKKS 91

[Close]
BLAST of MS019320 vs. TAIR 10
Match: AT5G49300.1 (GATA transcription factor 16 )

HSP 1 Score: 81.3 bits (199), Expect = 2.9e-16
Identity = 40/58 (68.97%), Postives = 46/58 (79.31%), Query Frame = 0 

Query: 1  RKTCADCGTTKTPLWRGGPAGPKSLCNACGIRSRKKRRSLLGLNRGSEVERKNKGSSN 59
          +KTCADCGT+KTPLWRGGP GPKSLCNACGIR+RKKRR       G+E  +K K SS+
Sbjct: 35 KKTCADCGTSKTPLWRGGPVGPKSLCNACGIRNRKKRRG------GTEDNKKLKKSSS 86

[Close]
BLAST of MS019320 vs. TAIR 10
Match: AT5G26930.1 (GATA transcription factor 23 )

HSP 1 Score: 73.2 bits (178), Expect = 7.9e-14
Identity = 32/44 (72.73%), Postives = 39/44 (88.64%), Query Frame = 0 

Query: 2  KTCADCGTTKTPLWRGGPAGPKSLCNACGIRSRKKRRS-LLGLN 45
          + C++C TTKTP+WRGGP GPKSLCNACGIR RK+RRS LLG++
Sbjct: 26 RCCSECKTTKTPMWRGGPTGPKSLCNACGIRHRKQRRSELLGIH 69

The following BLAST results are available for this feature:
BLAST of MS019320 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022138518.12.7e-24100.00GATA transcription factor 16-like [Momordica charantia][more]
XP_008458384.11.8e-2396.55PREDICTED: GATA transcription factor 16-like isoform X1 [Cucumis melo] >TYK02936... [more]
XP_004150081.11.8e-2396.55GATA transcription factor 16 [Cucumis sativus] >KGN47402.1 hypothetical protein ... [more]
XP_008458385.11.8e-2396.55PREDICTED: GATA transcription factor 16-like isoform X2 [Cucumis melo][more]
XP_023548663.12.3e-2396.55GATA transcription factor 16-like [Cucurbita pepo subsp. pepo][more]
BLAST of MS019320 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q9LIB56.3e-1666.67GATA transcription factor 17 OS=Arabidopsis thaliana OX=3702 GN=GATA17 PE=2 SV=1[more]
Q8LG103.1e-1569.81GATA transcription factor 15 OS=Arabidopsis thaliana OX=3702 GN=GATA15 PE=2 SV=2[more]
Q9FJ104.1e-1568.97GATA transcription factor 16 OS=Arabidopsis thaliana OX=3702 GN=GATA16 PE=2 SV=1[more]
Q8LC591.1e-1272.73GATA transcription factor 23 OS=Arabidopsis thaliana OX=3702 GN=GATA23 PE=2 SV=2[more]
Q6YW482.5e-1266.67Protein CYTOKININ-RESPONSIVE GATA TRANSCRIPTION FACTOR 1 OS=Oryza sativa subsp. ... [more]
BLAST of MS019320 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1CD731.3e-24100.00GATA transcription factor 16-like OS=Momordica charantia OX=3673 GN=LOC111009666... [more]
A0A5D3BXI18.5e-2496.55GATA transcription factor 16-like isoform X1 OS=Cucumis melo var. makuwa OX=1194... [more]
A0A0A0KG768.5e-2496.55GATA-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G312540 P... [more]
A0A1S3C8C28.5e-2496.55GATA transcription factor 16-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC10349... [more]
A0A1S3C9028.5e-2496.55GATA transcription factor 16-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC10349... [more]
BLAST of MS019320 vs. TAIR 10
Match NameE-valueIdentityDescription
AT4G16141.11.5e-1765.52GATA type zinc finger transcription factor family protein [more]
AT3G16870.14.5e-1766.67GATA transcription factor 17 [more]
AT3G06740.12.2e-1669.81GATA transcription factor 15 [more]
AT5G49300.12.9e-1668.97GATA transcription factor 16 [more]
AT5G26930.17.9e-1472.73GATA transcription factor 23 [more]
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000679Zinc finger, GATA-typeSMARTSM00401GATA_3coord: 1..56
e-value: 8.4E-11
score: 51.9
IPR000679Zinc finger, GATA-typePFAMPF00320GATAcoord: 4..38
e-value: 6.2E-18
score: 64.1
IPR000679Zinc finger, GATA-typePROSITEPS00344GATA_ZN_FINGER_1coord: 4..29
IPR000679Zinc finger, GATA-typePROSITEPS50114GATA_ZN_FINGER_2coord: 1..34
score: 12.663681
IPR000679Zinc finger, GATA-typeCDDcd00202ZnF_GATAcoord: 3..38
e-value: 1.91647E-10
score: 48.1378
IPR013088Zinc finger, NHR/GATA-typeGENE3D3.30.50.10coord: 1..58
e-value: 1.2E-17
score: 65.7
NoneNo IPR availablePANTHERPTHR47172:SF13GATA TRANSCRIPTION FACTOR 15-LIKEcoord: 2..53
NoneNo IPR availablePANTHERPTHR47172OS01G0976800 PROTEINcoord: 2..53
NoneNo IPR availableSUPERFAMILY57716Glucocorticoid receptor-like (DNA-binding domain)coord: 3..37

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS019320.1MS019320.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006355 regulation of transcription, DNA-templated
molecular_function GO:0043565 sequence-specific DNA binding
molecular_function GO:0008270 zinc ion binding