MS018971 (gene) Bitter gourd (TR) v1

Overview


Name	MS018971
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Transcription factor UPBEAT1
Location	scaffold20: 362393 .. 362656 (-)
RNA-Seq Expression	MS018971
Synteny	MS018971

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAGTAAGCGACGACTCAGATGATCGAGTTTCGGATGGGCAAATCGCAAGATTAGCCCGGAGGAAGCAACCGAAGTTGCCGAGGTCGAGGTCGGACAAGAGGGTTTGTTGTAAGAGGATTAGGAGGCTGAGGAAGATGATCCCAAATACTGAATCTGTGGAGTTGAATGGGCTTTTTAGAGAGACAGCTGATTATGTTTTGTGGTTGCAAATGAAGGTGAGGGTGATGCAGGCTTTGGTTCATGTGCTGAAAGGCTCCGAT

mRNA sequence

ATGGAAGTAAGCGACGACTCAGATGATCGAGTTTCGGATGGGCAAATCGCAAGATTAGCCCGGAGGAAGCAACCGAAGTTGCCGAGGTCGAGGTCGGACAAGAGGGTTTGTTGTAAGAGGATTAGGAGGCTGAGGAAGATGATCCCAAATACTGAATCTGTGGAGTTGAATGGGCTTTTTAGAGAGACAGCTGATTATGTTTTGTGGTTGCAAATGAAGGTGAGGGTGATGCAGGCTTTGGTTCATGTGCTGAAAGGCTCCGAT

Coding sequence (CDS)

ATGGAAGTAAGCGACGACTCAGATGATCGAGTTTCGGATGGGCAAATCGCAAGATTAGCCCGGAGGAAGCAACCGAAGTTGCCGAGGTCGAGGTCGGACAAGAGGGTTTGTTGTAAGAGGATTAGGAGGCTGAGGAAGATGATCCCAAATACTGAATCTGTGGAGTTGAATGGGCTTTTTAGAGAGACAGCTGATTATGTTTTGTGGTTGCAAATGAAGGTGAGGGTGATGCAGGCTTTGGTTCATGTGCTGAAAGGCTCCGAT

Protein sequence

MEVSDDSDDRVSDGQIARLARRKQPKLPRSRSDKRVCCKRIRRLRKMIPNTESVELNGLFRETADYVLWLQMKVRVMQALVHVLKGSD

Homology

[Close]

BLAST of MS018971 vs. NCBI nr
Match: KAA0038125.1 (basic helix-loop-helix protein [Cucumis melo var. makuwa] >TYK20482.1 basic helix-loop-helix protein [Cucumis melo var. makuwa])

HSP 1 Score: 104.8 bits (260), Expect = 4.0e-19
Identity = 56/84 (66.67%), Postives = 69/84 (82.14%), Query Frame = 0


Query: 9  DRVSDGQIARLARRKQ----PKLPRSRSDKRVCCKRIRRLRKMIPNTESVELNGLFRETA 68
          D VSD +IA+   +K+     +L RS S+KR+C KRIR+LRKMIP +ES+ELNGLFRETA
Sbjct: 7  DTVSDRRIAKQVIKKKVEMVSRLSRS-SEKRICLKRIRKLRKMIPKSESMELNGLFRETA 66

Query: 69 DYVLWLQMKVRVMQALVHVLKGSD 89
          DY++WLQMKVR+MQALVHVL GSD
Sbjct: 67 DYIVWLQMKVRMMQALVHVLNGSD 89

[Close]

BLAST of MS018971 vs. NCBI nr
Match: KGN58133.1 (hypothetical protein Csa_017541 [Cucumis sativus])

HSP 1 Score: 103.6 bits (257), Expect = 8.9e-19
Identity = 54/83 (65.06%), Postives = 69/83 (83.13%), Query Frame = 0


Query: 9  DRVSDGQIAR-LARRKQPKLPRS--RSDKRVCCKRIRRLRKMIPNTESVELNGLFRETAD 68
          D VSD +IA+ + ++K   + RS   S+KR+C KRIRRL+KM+P +ES+ELNGLFRETAD
Sbjct: 7  DTVSDRRIAKQVIKKKVEMVSRSSRSSEKRICLKRIRRLKKMVPKSESMELNGLFRETAD 66

Query: 69 YVLWLQMKVRVMQALVHVLKGSD 89
          Y++WLQMKVR+MQALVHVL GSD
Sbjct: 67 YIVWLQMKVRMMQALVHVLNGSD 89

[Close]

BLAST of MS018971 vs. NCBI nr
Match: KAF9863568.1 (hypothetical protein H0E87_014084 [Populus deltoides])

HSP 1 Score: 70.9 bits (172), Expect = 6.4e-09
Identity = 33/50 (66.00%), Postives = 44/50 (88.00%), Query Frame = 0


Query: 39  KRIRRLRKMIPNTESVELNGLFRETADYVLWLQMKVRVMQALVHVLKGSD 89
           +R+R L+K+IPN+ES+ L+GLFRETADY+L LQM+V+VMQ +V VL GSD
Sbjct: 86  RRVRTLKKLIPNSESMGLDGLFRETADYILSLQMRVKVMQIMVKVLTGSD 135

[Close]

BLAST of MS018971 vs. NCBI nr
Match: XP_019427947.1 (PREDICTED: transcription factor UPBEAT1-like [Lupinus angustifolius] >OIV91397.1 hypothetical protein TanjilG_02015 [Lupinus angustifolius])

HSP 1 Score: 70.9 bits (172), Expect = 6.4e-09
Identity = 31/50 (62.00%), Postives = 45/50 (90.00%), Query Frame = 0


Query: 39  KRIRRLRKMIPNTESVELNGLFRETADYVLWLQMKVRVMQALVHVLKGSD 89
           +++R L+K++PN+ES+EL+GLFRETADY+L LQ +VR+M+ LV+VL GSD
Sbjct: 72  RKVRTLKKLVPNSESLELDGLFRETADYILALQTRVRIMKVLVNVLTGSD 121

[Close]

BLAST of MS018971 vs. NCBI nr
Match: AHY20045.1 (basic helix-loop-helix protein [Populus simonii x Populus nigra])

HSP 1 Score: 70.9 bits (172), Expect = 6.4e-09
Identity = 33/50 (66.00%), Postives = 44/50 (88.00%), Query Frame = 0


Query: 39  KRIRRLRKMIPNTESVELNGLFRETADYVLWLQMKVRVMQALVHVLKGSD 89
           +R+R L+K+IPN+ES+ L+GLFRETADY+L LQM+V+VMQ +V VL GSD
Sbjct: 86  RRVRTLKKLIPNSESMGLDGLFRETADYILSLQMRVKVMQIMVKVLTGSD 135

[Close]

BLAST of MS018971 vs. ExPASy Swiss-Prot
Match: O22901 (Transcription factor UPBEAT1 OS=Arabidopsis thaliana OX=3702 GN=UPB1 PE=2 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 5.6e-08
Identity = 30/70 (42.86%), Postives = 50/70 (71.43%), Query Frame = 0


Query: 16 IARLARRKQPKLPRSRSDKRVCCKRIRRLRKMIPNTESVE-LNGLFRETADYVLWLQMKV 75
          + ++  R +  +  SR   R   +R++ L++++PNT++ E L+GLFR+TADY+L L+MKV
Sbjct: 27 VKKIMIRPRKSVEASRRPCRAIHRRVKTLKELVPNTKTSEGLDGLFRQTADYILALEMKV 86

Query: 76 RVMQALVHVL 85
          +VMQ +V VL
Sbjct: 87 KVMQTMVQVL 96

[Close]

BLAST of MS018971 vs. ExPASy TrEMBL
Match: A0A5A7T9M0 (Basic helix-loop-helix protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold237G00560 PE=4 SV=1)

HSP 1 Score: 104.8 bits (260), Expect = 1.9e-19
Identity = 56/84 (66.67%), Postives = 69/84 (82.14%), Query Frame = 0


Query: 9  DRVSDGQIARLARRKQ----PKLPRSRSDKRVCCKRIRRLRKMIPNTESVELNGLFRETA 68
          D VSD +IA+   +K+     +L RS S+KR+C KRIR+LRKMIP +ES+ELNGLFRETA
Sbjct: 7  DTVSDRRIAKQVIKKKVEMVSRLSRS-SEKRICLKRIRKLRKMIPKSESMELNGLFRETA 66

Query: 69 DYVLWLQMKVRVMQALVHVLKGSD 89
          DY++WLQMKVR+MQALVHVL GSD
Sbjct: 67 DYIVWLQMKVRMMQALVHVLNGSD 89

[Close]

BLAST of MS018971 vs. ExPASy TrEMBL
Match: A0A0A0L8J6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G536650 PE=4 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 4.3e-19
Identity = 54/83 (65.06%), Postives = 69/83 (83.13%), Query Frame = 0


Query: 9  DRVSDGQIAR-LARRKQPKLPRS--RSDKRVCCKRIRRLRKMIPNTESVELNGLFRETAD 68
          D VSD +IA+ + ++K   + RS   S+KR+C KRIRRL+KM+P +ES+ELNGLFRETAD
Sbjct: 7  DTVSDRRIAKQVIKKKVEMVSRSSRSSEKRICLKRIRRLKKMVPKSESMELNGLFRETAD 66

Query: 69 YVLWLQMKVRVMQALVHVLKGSD 89
          Y++WLQMKVR+MQALVHVL GSD
Sbjct: 67 YIVWLQMKVRMMQALVHVLNGSD 89

[Close]

BLAST of MS018971 vs. ExPASy TrEMBL
Match: A0A3G0Z5L8 (Basic helix-loop-helix protein OS=Populus simonii x Populus nigra OX=591066 GN=bHLH02 PE=2 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 3.1e-09
Identity = 33/50 (66.00%), Postives = 44/50 (88.00%), Query Frame = 0


Query: 39  KRIRRLRKMIPNTESVELNGLFRETADYVLWLQMKVRVMQALVHVLKGSD 89
           +R+R L+K+IPN+ES+ L+GLFRETADY+L LQM+V+VMQ +V VL GSD
Sbjct: 86  RRVRTLKKLIPNSESMGLDGLFRETADYILSLQMRVKVMQIMVKVLTGSD 135

[Close]

BLAST of MS018971 vs. ExPASy TrEMBL
Match: A0A4V5ZXB7 (Uncharacterized protein OS=Populus alba OX=43335 GN=D5086_0000325720 PE=4 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 5.3e-09
Identity = 33/50 (66.00%), Postives = 44/50 (88.00%), Query Frame = 0


Query: 39  KRIRRLRKMIPNTESVELNGLFRETADYVLWLQMKVRVMQALVHVLKGSD 89
           +R+R L+K+IP++ES+ L+GLFRETADY+L LQM+VRVMQ +V VL GSD
Sbjct: 68  RRVRTLKKLIPDSESMGLDGLFRETADYILSLQMRVRVMQIMVKVLTGSD 117

[Close]

BLAST of MS018971 vs. ExPASy TrEMBL
Match: B9GSV5 (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_002G193300 PE=4 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 6.9e-09
Identity = 44/101 (43.56%), Postives = 61/101 (60.40%), Query Frame = 0


Query: 9   DRVSDGQIAR---LARRKQPKLPRSRSDKRVCCK------------------RIRRLRKM 68
           ++VS+ Q  R   L R+K  +  RS+   R+  K                  R+R L+K+
Sbjct: 35  NKVSEAQTKRRCPLRRQKNGRHARSKRPGRILMKRRARAEGSTVRSGYGIERRVRTLKKL 94

Query: 69  IPNTESVELNGLFRETADYVLWLQMKVRVMQALVHVLKGSD 89
           IPN+ES+ L+GLFRETADY+L LQM+V+VMQ +V VL GSD
Sbjct: 95  IPNSESMGLDGLFRETADYILSLQMRVKVMQIMVKVLTGSD 135

[Close]

BLAST of MS018971 vs. TAIR 10
Match: AT2G47270.1 (sequence-specific DNA binding transcription factors;transcription regulators )

HSP 1 Score: 58.2 bits (139), Expect = 4.0e-09
Identity = 30/70 (42.86%), Postives = 50/70 (71.43%), Query Frame = 0


Query: 16 IARLARRKQPKLPRSRSDKRVCCKRIRRLRKMIPNTESVE-LNGLFRETADYVLWLQMKV 75
          + ++  R +  +  SR   R   +R++ L++++PNT++ E L+GLFR+TADY+L L+MKV
Sbjct: 27 VKKIMIRPRKSVEASRRPCRAIHRRVKTLKELVPNTKTSEGLDGLFRQTADYILALEMKV 86

Query: 76 RVMQALVHVL 85
          +VMQ +V VL
Sbjct: 87 KVMQTMVQVL 96

The following BLAST results are available for this feature:

BLAST of MS018971 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0038125.1	4.0e-19	66.67	basic helix-loop-helix protein [Cucumis melo var. makuwa] >TYK20482.1 basic heli...	[more]
KGN58133.1	8.9e-19	65.06	hypothetical protein Csa_017541 [Cucumis sativus]	[more]
KAF9863568.1	6.4e-09	66.00	hypothetical protein H0E87_014084 [Populus deltoides]	[more]
XP_019427947.1	6.4e-09	62.00	PREDICTED: transcription factor UPBEAT1-like [Lupinus angustifolius] >OIV91397.1...	[more]
AHY20045.1	6.4e-09	66.00	basic helix-loop-helix protein [Populus simonii x Populus nigra]	[more]

BLAST of MS018971 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O22901	5.6e-08	42.86	Transcription factor UPBEAT1 OS=Arabidopsis thaliana OX=3702 GN=UPB1 PE=2 SV=1	[more]

BLAST of MS018971 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7T9M0	1.9e-19	66.67	Basic helix-loop-helix protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s...	[more]
A0A0A0L8J6	4.3e-19	65.06	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G536650 PE=4 SV=1	[more]
A0A3G0Z5L8	3.1e-09	66.00	Basic helix-loop-helix protein OS=Populus simonii x Populus nigra OX=591066 GN=b...	[more]
A0A4V5ZXB7	5.3e-09	66.00	Uncharacterized protein OS=Populus alba OX=43335 GN=D5086_0000325720 PE=4 SV=1	[more]
B9GSV5	6.9e-09	43.56	Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_002G193300 PE=4 ...	[more]

BLAST of MS018971 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G47270.1	4.0e-09	42.86	sequence-specific DNA binding transcription factors;transcription regulators	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..32
None	No IPR available	PANTHER	PTHR33124:SF39	TRANSCRIPTION FACTOR UPBEAT1	coord: 19..85
IPR044660	Transcription factor IBH1-like	PANTHER	PTHR33124	TRANSCRIPTION FACTOR IBH1-LIKE 1	coord: 19..85

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS018971.1	MS018971.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated