MS018908 (gene) Bitter gourd (TR) v1

Overview


Name	MS018908
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	succinate dehydrogenase subunit 5, mitochondrial-like
Location	scaffold89: 322336 .. 324751 (-)
RNA-Seq Expression	MS018908
Synteny	MS018908

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGAAAATGGTGATTCTCAGATCACTATTGCGTTCTGTCCGCGTCGGATCTTACGGCGTCGCCGGAGTCAGACACCGGAATTTGCTGCAAAGTCATCACCAGGCTGCCCGAAGTTTATTCCATCTGTCGTCTCATCGTTCTTCTGTTTCAGATTCTCTGCAGAGAGTTTCCTCCGGTACTTCTCATTCTTCTAATTAGTTATATTTATACTCTGTTTTTATCCATTAATTCAAATCTCTCCGGATTAATTTTGAAATAAAGTGGAATTTCCTGGCTAGTTGTTCGATAGTGTTTTATTGAACTAGTTTAATTCTAGCTATTGATTCTTTTGTCGGTTTAATTTTACCGGTGATCGATAAACTGCCATCTCCTTCCTCTTGAACCTTACTACTATTTGTTGCCGATCGAGCAACGAAAACAAAATTTGAGAAGAATCTGCACTACATTGTGAAATAAAGTAACTTCTATGGCTTCAATCGTGAGGCGGAACAAAGAAGTTGAACTCTATTTTATATAGTAATGATTTAAAAGCAGCTCATTTTTGCTAGGGAAATCAATATATGTTGATTTGGGATTGGATATGTGTAATAATAAGGTGGTTTTTTCTTCATGCTGTCGTGATGCTAGGATGACCCGCTAGACGGTTAGCCAGGATTTTTCTTCTCGTCTGCTGGTAAACATAGGTTTGAACTTTCGATTTTCTCACTCGATAAGCGAACTCACACATGAATTTATTATATGCTGCTTATTTTGTCTTATAGATTCGGTTAGGAACTCCTTTTCGCAATTTCTTATTAAATATATGTTTCTTCTTCCATCAAATTTCAAATTCAGATCTTTGCTTCTGCATTTGTACAGTAAATTTGCTATATTCTCTTTTATATCAGCATTTATCATCAAGTCAACTGTGCTGCAAGTCTTCATATAATTTGCAATTTGTGTATAATTTTTATGTCAAATGCTATATTTCTTCAAGTGCCCCTTATTGTTACTTCATTGTTGTCTCGACATTATTTTAAGATTTGTAAAATGGCAATATGTAACTTAGCTATACCTATGTTTTAAAGAATTGCATGAAAATCAATCCCGTATTGGGGAGCAAGGAATGTCATCTGAAGTTGTAAAACTCGTTTAGCTTTACACAAGCTGAATATCCTATTTTTTAGCAAATGCATTTTTTAATTAGTATAAGATGAGATACATGGGGGAAGAGTGAAAGTTTCAACCTATTCTGTGCAGCAATGTGCACTGTGAAAAAATTTATTGCCTTGGTAGAGTAGTTTCAGAAAATTTCAGAAATTTCACCATAGGTGGCAACCACGCCAGCCTACCATGGTGATCTGAAATGTTTGAACAATCTAGATGGATTCAATTAAATTATTTTTTCAGTATCACAATGTTTTAAAAGATATCATATTTCTGTTTCTTCTGGTAAATTTATGCAGATTGTGGTTATCCATCTGGTGTAGGGCGTGTGAGATTTTTTAGTGTTGATGTAGTTCATATGCCTACAATTGAAGATTCCAAGCTTCAAAATGTTTTCAAGGATTTGATGGCTACAAGTTGGGATGAGCTTCCTAACTCTATTGTCTATGATGTAAAGGCAGCATTATCTGGAAGCACAGACGACAAGGCCGGAAAGGAAGTTGTGGAAAATGTTTTCCGAGCTGCTGAAGCAGTTGAGGAGTTTGGTGGCATACTTATCAATTTGAAAATGAAAATTGATGATAGTATTGGTCTCAGTGGCGAGGTATTGAAAATTATAAAATTTTCAACTTATTTTTTTCTCCAGTTTTTGATCAATTAAAAACTTCAAAATCCATCTGCAGGATGTTAAGCCTTTGTCAGATGAGCTTAAGAATGCATTACATACAGTTCATGATCGCTATACAACCTACTTGGATGCATTTGGTCCGGAAGAGAACTATCTGCGGAAGAAAGTGGAGACAGAGTTGGGAACAAAGATGATATACTTGAAAATGCGATGCAGTGGCCTTGGATCCGAGTGGGGAAAGGTATTAAAACTCTATTAAAACTCTGCTATGGAATTCATTAATTGCTATTTAGAACATTTAAATTGGTGAAATAAGTATAGCCCATGAGGCAGTTTCCACAGAAGAAATGTTATGTCCAGCTATTAGTCTTAAAATTCTTACACCATTGAATTATAAGAGTAGAGTCTTTAAATCACCATATGTTAATTTTAAACTGGAAAGGAAGCTCACATACTTATTTTGGAAAGAGTCCATGCTTCTGCTCACATACTTATTTTGGAAAGAGTCCATGCTTCTGTTCTTCTAATAAATGAATTTGATCATTTGATTTTGTTAACCATGTCTTGTTTTCTATTTTACGACAGGTTTCGGTGCTGGGAACCTCTGGTCTATCAGGCTCATATGTCGAGCAAAGAGCA

mRNA sequence

ATGGAGAAAATGGTGATTCTCAGATCACTATTGCGTTCTGTCCGCGTCGGATCTTACGGCGTCGCCGGAGTCAGACACCGGAATTTGCTGCAAAGTCATCACCAGGCTGCCCGAAGTTTATTCCATCTGTCGTCTCATCGTTCTTCTGTTTCAGATTCTCTGCAGAGAGTTTCCTCCGATTGTGGTTATCCATCTGGTGTAGGGCGTGTGAGATTTTTTAGTGTTGATGTAGTTCATATGCCTACAATTGAAGATTCCAAGCTTCAAAATGTTTTCAAGGATTTGATGGCTACAAGTTGGGATGAGCTTCCTAACTCTATTGTCTATGATGTAAAGGCAGCATTATCTGGAAGCACAGACGACAAGGCCGGAAAGGAAGTTGTGGAAAATGTTTTCCGAGCTGCTGAAGCAGTTGAGGAGTTTGGTGGCATACTTATCAATTTGAAAATGAAAATTGATGATAGTATTGGTCTCAGTGGCGAGGATGTTAAGCCTTTGTCAGATGAGCTTAAGAATGCATTACATACAGTTCATGATCGCTATACAACCTACTTGGATGCATTTGGTCCGGAAGAGAACTATCTGCGGAAGAAAGTGGAGACAGAGTTGGGAACAAAGATGATATACTTGAAAATGCGATGCAGTGGCCTTGGATCCGAGTGGGGAAAGGTTTCGGTGCTGGGAACCTCTGGTCTATCAGGCTCATATGTCGAGCAAAGAGCA

Coding sequence (CDS)

ATGGAGAAAATGGTGATTCTCAGATCACTATTGCGTTCTGTCCGCGTCGGATCTTACGGCGTCGCCGGAGTCAGACACCGGAATTTGCTGCAAAGTCATCACCAGGCTGCCCGAAGTTTATTCCATCTGTCGTCTCATCGTTCTTCTGTTTCAGATTCTCTGCAGAGAGTTTCCTCCGATTGTGGTTATCCATCTGGTGTAGGGCGTGTGAGATTTTTTAGTGTTGATGTAGTTCATATGCCTACAATTGAAGATTCCAAGCTTCAAAATGTTTTCAAGGATTTGATGGCTACAAGTTGGGATGAGCTTCCTAACTCTATTGTCTATGATGTAAAGGCAGCATTATCTGGAAGCACAGACGACAAGGCCGGAAAGGAAGTTGTGGAAAATGTTTTCCGAGCTGCTGAAGCAGTTGAGGAGTTTGGTGGCATACTTATCAATTTGAAAATGAAAATTGATGATAGTATTGGTCTCAGTGGCGAGGATGTTAAGCCTTTGTCAGATGAGCTTAAGAATGCATTACATACAGTTCATGATCGCTATACAACCTACTTGGATGCATTTGGTCCGGAAGAGAACTATCTGCGGAAGAAAGTGGAGACAGAGTTGGGAACAAAGATGATATACTTGAAAATGCGATGCAGTGGCCTTGGATCCGAGTGGGGAAAGGTTTCGGTGCTGGGAACCTCTGGTCTATCAGGCTCATATGTCGAGCAAAGAGCA

Protein sequence

MEKMVILRSLLRSVRVGSYGVAGVRHRNLLQSHHQAARSLFHLSSHRSSVSDSLQRVSSDCGYPSGVGRVRFFSVDVVHMPTIEDSKLQNVFKDLMATSWDELPNSIVYDVKAALSGSTDDKAGKEVVENVFRAAEAVEEFGGILINLKMKIDDSIGLSGEDVKPLSDELKNALHTVHDRYTTYLDAFGPEENYLRKKVETELGTKMIYLKMRCSGLGSEWGKVSVLGTSGLSGSYVEQRA

Homology

[Close]

BLAST of MS018908 vs. NCBI nr
Match: XP_022144354.1 (succinate dehydrogenase subunit 5, mitochondrial-like isoform X1 [Momordica charantia])

HSP 1 Score: 471.1 bits (1211), Expect = 5.8e-129
Identity = 240/241 (99.59%), Postives = 241/241 (100.00%), Query Frame = 0


Query: 1   MEKMVILRSLLRSVRVGSYGVAGVRHRNLLQSHHQAARSLFHLSSHRSSVSDSLQRVSSD 60
           MEKM+ILRSLLRSVRVGSYGVAGVRHRNLLQSHHQAARSLFHLSSHRSSVSDSLQRVSSD
Sbjct: 1   MEKMMILRSLLRSVRVGSYGVAGVRHRNLLQSHHQAARSLFHLSSHRSSVSDSLQRVSSD 60

Query: 61  CGYPSGVGRVRFFSVDVVHMPTIEDSKLQNVFKDLMATSWDELPNSIVYDVKAALSGSTD 120
           CGYPSGVGRVRFFSVDVVHMPTIEDSKLQNVFKDLMATSWDELPNSIVYDVKAALSGSTD
Sbjct: 61  CGYPSGVGRVRFFSVDVVHMPTIEDSKLQNVFKDLMATSWDELPNSIVYDVKAALSGSTD 120

Query: 121 DKAGKEVVENVFRAAEAVEEFGGILINLKMKIDDSIGLSGEDVKPLSDELKNALHTVHDR 180
           DKAGKEVVENVFRAAEAVEEFGGILINLKMKIDDSIGLSGEDVKPLSDELKNALHTVHDR
Sbjct: 121 DKAGKEVVENVFRAAEAVEEFGGILINLKMKIDDSIGLSGEDVKPLSDELKNALHTVHDR 180

Query: 181 YTTYLDAFGPEENYLRKKVETELGTKMIYLKMRCSGLGSEWGKVSVLGTSGLSGSYVEQR 240
           YTTYLDAFGPEENYLRKKVETELGTKMIYLKMRCSGLGSEWGKVSVLGTSGLSGSYVEQR
Sbjct: 181 YTTYLDAFGPEENYLRKKVETELGTKMIYLKMRCSGLGSEWGKVSVLGTSGLSGSYVEQR 240

Query: 241 A 242
           A
Sbjct: 241 A 241

[Close]

BLAST of MS018908 vs. NCBI nr
Match: XP_022144355.1 (succinate dehydrogenase subunit 5, mitochondrial-like isoform X2 [Momordica charantia])

HSP 1 Score: 444.5 bits (1142), Expect = 5.8e-121
Identity = 232/241 (96.27%), Postives = 233/241 (96.68%), Query Frame = 0


Query: 1   MEKMVILRSLLRSVRVGSYGVAGVRHRNLLQSHHQAARSLFHLSSHRSSVSDSLQRVSSD 60
           MEKM+ILRSLLRSVRVGSYGVAGVRHRNLLQSHHQAARSLFHLSSHRSSVSDSLQRVSS 
Sbjct: 1   MEKMMILRSLLRSVRVGSYGVAGVRHRNLLQSHHQAARSLFHLSSHRSSVSDSLQRVSS- 60

Query: 61  CGYPSGVGRVRFFSVDVVHMPTIEDSKLQNVFKDLMATSWDELPNSIVYDVKAALSGSTD 120
                  GRVRFFSVDVVHMPTIEDSKLQNVFKDLMATSWDELPNSIVYDVKAALSGSTD
Sbjct: 61  -------GRVRFFSVDVVHMPTIEDSKLQNVFKDLMATSWDELPNSIVYDVKAALSGSTD 120

Query: 121 DKAGKEVVENVFRAAEAVEEFGGILINLKMKIDDSIGLSGEDVKPLSDELKNALHTVHDR 180
           DKAGKEVVENVFRAAEAVEEFGGILINLKMKIDDSIGLSGEDVKPLSDELKNALHTVHDR
Sbjct: 121 DKAGKEVVENVFRAAEAVEEFGGILINLKMKIDDSIGLSGEDVKPLSDELKNALHTVHDR 180

Query: 181 YTTYLDAFGPEENYLRKKVETELGTKMIYLKMRCSGLGSEWGKVSVLGTSGLSGSYVEQR 240
           YTTYLDAFGPEENYLRKKVETELGTKMIYLKMRCSGLGSEWGKVSVLGTSGLSGSYVEQR
Sbjct: 181 YTTYLDAFGPEENYLRKKVETELGTKMIYLKMRCSGLGSEWGKVSVLGTSGLSGSYVEQR 233

Query: 241 A 242
           A
Sbjct: 241 A 233

[Close]

BLAST of MS018908 vs. NCBI nr
Match: XP_022135709.1 (succinate dehydrogenase subunit 5, mitochondrial-like isoform X1 [Momordica charantia])

HSP 1 Score: 439.9 bits (1130), Expect = 1.4e-119
Identity = 226/241 (93.78%), Postives = 232/241 (96.27%), Query Frame = 0


Query: 1   MEKMVILRSLLRSVRVGSYGVAGVRHRNLLQSHHQAARSLFHLSSHRSSVSDSLQRVSSD 60
           MEKMVILRSLLRSVRVGSYGVAGVRHRNLLQSHHQAARS F+LSSHRSS+SD  QRVSSD
Sbjct: 1   MEKMVILRSLLRSVRVGSYGVAGVRHRNLLQSHHQAARSFFYLSSHRSSLSDFPQRVSSD 60

Query: 61  CGYPSGVGRVRFFSVDVVHMPTIEDSKLQNVFKDLMATSWDELPNSIVYDVKAALSGSTD 120
           C Y SGVGR R FSVDVV M TIEDSKLQNVFKDLMATSWDELPNS+VYDVKAALSGSTD
Sbjct: 61  CCYLSGVGRARLFSVDVVRMATIEDSKLQNVFKDLMATSWDELPNSVVYDVKAALSGSTD 120

Query: 121 DKAGKEVVENVFRAAEAVEEFGGILINLKMKIDDSIGLSGEDVKPLSDELKNALHTVHDR 180
           DKAGKEVVENVFRAAEAVEEFGGILI+LKMKIDDSIGLSGEDVKPLSDELKNALHTVHDR
Sbjct: 121 DKAGKEVVENVFRAAEAVEEFGGILISLKMKIDDSIGLSGEDVKPLSDELKNALHTVHDR 180

Query: 181 YTTYLDAFGPEENYLRKKVETELGTKMIYLKMRCSGLGSEWGKVSVLGTSGLSGSYVEQR 240
           YTTYLDAFGPEENYLRKKVET+LGTKMIYLK+RCSGLGSEWGKVSVLGTSGLSGSYVEQR
Sbjct: 181 YTTYLDAFGPEENYLRKKVETDLGTKMIYLKIRCSGLGSEWGKVSVLGTSGLSGSYVEQR 240

Query: 241 A 242
           A
Sbjct: 241 A 241

[Close]

BLAST of MS018908 vs. NCBI nr
Match: XP_022135710.1 (succinate dehydrogenase subunit 5, mitochondrial-like isoform X2 [Momordica charantia])

HSP 1 Score: 420.6 bits (1080), Expect = 9.0e-114
Identity = 220/241 (91.29%), Postives = 226/241 (93.78%), Query Frame = 0


Query: 1   MEKMVILRSLLRSVRVGSYGVAGVRHRNLLQSHHQAARSLFHLSSHRSSVSDSLQRVSSD 60
           MEKMVILRSLLRSVRVGSYGVAGVRHRNLLQSHHQAARS F+LSSHRSS+SD  QRVSS 
Sbjct: 1   MEKMVILRSLLRSVRVGSYGVAGVRHRNLLQSHHQAARSFFYLSSHRSSLSDFPQRVSS- 60

Query: 61  CGYPSGVGRVRFFSVDVVHMPTIEDSKLQNVFKDLMATSWDELPNSIVYDVKAALSGSTD 120
                  GR R FSVDVV M TIEDSKLQNVFKDLMATSWDELPNS+VYDVKAALSGSTD
Sbjct: 61  -------GRARLFSVDVVRMATIEDSKLQNVFKDLMATSWDELPNSVVYDVKAALSGSTD 120

Query: 121 DKAGKEVVENVFRAAEAVEEFGGILINLKMKIDDSIGLSGEDVKPLSDELKNALHTVHDR 180
           DKAGKEVVENVFRAAEAVEEFGGILI+LKMKIDDSIGLSGEDVKPLSDELKNALHTVHDR
Sbjct: 121 DKAGKEVVENVFRAAEAVEEFGGILISLKMKIDDSIGLSGEDVKPLSDELKNALHTVHDR 180

Query: 181 YTTYLDAFGPEENYLRKKVETELGTKMIYLKMRCSGLGSEWGKVSVLGTSGLSGSYVEQR 240
           YTTYLDAFGPEENYLRKKVET+LGTKMIYLK+RCSGLGSEWGKVSVLGTSGLSGSYVEQR
Sbjct: 181 YTTYLDAFGPEENYLRKKVETDLGTKMIYLKIRCSGLGSEWGKVSVLGTSGLSGSYVEQR 233

Query: 241 A 242
           A
Sbjct: 241 A 233

[Close]

BLAST of MS018908 vs. NCBI nr
Match: XP_023001943.1 (succinate dehydrogenase subunit 5, mitochondrial-like [Cucurbita maxima])

HSP 1 Score: 410.6 bits (1054), Expect = 9.3e-111
Identity = 208/241 (86.31%), Postives = 221/241 (91.70%), Query Frame = 0


Query: 1   MEKMVILRSLLRSVRVGSYGVAGVRHRNLLQSHHQAARSLFHLSSHRSSVSDSLQRVSSD 60
           MEKMV+LRSLLRSVR GSY +AGVRHR+LLQSH+QAAR+  HLSS RSS SDS QRVS D
Sbjct: 1   MEKMVVLRSLLRSVRAGSYSIAGVRHRSLLQSHYQAARNFSHLSSPRSSFSDSPQRVSYD 60

Query: 61  CGYPSGVGRVRFFSVDVVHMPTIEDSKLQNVFKDLMATSWDELPNSIVYDVKAALSGSTD 120
           CGY SGVG  RFFSVDV HMPTIEDSKLQN FKDLMA SWD LP S+VYDVK ALSGST+
Sbjct: 61  CGYLSGVGHARFFSVDVAHMPTIEDSKLQNAFKDLMAASWDNLPESVVYDVKVALSGSTN 120

Query: 121 DKAGKEVVENVFRAAEAVEEFGGILINLKMKIDDSIGLSGEDVKPLSDELKNALHTVHDR 180
           D+AGKE+VENVFRAAEA EEFGGIL +LKMKIDDSIGLSGEDVKPLSDELKNAL TVHDR
Sbjct: 121 DEAGKEIVENVFRAAEASEEFGGILTSLKMKIDDSIGLSGEDVKPLSDELKNALQTVHDR 180

Query: 181 YTTYLDAFGPEENYLRKKVETELGTKMIYLKMRCSGLGSEWGKVSVLGTSGLSGSYVEQR 240
           YT+YLDAFGPEENYL+KKVETELGTKMI+LKMRCSGLGSEWGKVSVLGTSGLSGSYVEQR
Sbjct: 181 YTSYLDAFGPEENYLKKKVETELGTKMIHLKMRCSGLGSEWGKVSVLGTSGLSGSYVEQR 240

Query: 241 A 242
           A
Sbjct: 241 A 241

[Close]

BLAST of MS018908 vs. ExPASy Swiss-Prot
Match: Q9SX77 (Succinate dehydrogenase subunit 5, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=SDH5 PE=1 SV=1)

HSP 1 Score: 259.2 bits (661), Expect = 4.5e-68
Identity = 142/247 (57.49%), Postives = 173/247 (70.04%), Query Frame = 0


Query: 15  RVGSYGVAGVRHRNLLQSHHQAARSLFHLSSHRSSVS------------------DSLQR 74
           R+     A  R  +LLQ  H   +   HLS HR+ ++                   S   
Sbjct: 14  RIRGTAQAQARVGSLLQGSHHIEK---HLSRHRTLITVAPNASVIGDVQINKGSFISYAS 73

Query: 75  VSSDCGYP--SGVGRVRFFSVDVVHMPTIEDSKLQNVFKDLMATSWDELPNSIVYDVKAA 134
           VS D  YP   G+G+VR FS DV HMP +EDS + N FKDLMA  W ELP+++V D K A
Sbjct: 74  VSRDLQYPRAMGMGQVRRFSEDVSHMPEMEDSDVLNAFKDLMAADWAELPSAVVKDAKTA 133

Query: 135 LSGSTDDKAGKEVVENVFRAAEAVEEFGGILINLKMKIDDSIGLSGEDVKPLSDELKNAL 194
           +S +TDDKAG+E ++NVFRAAEAVEEFGGIL ++KM+IDDSIG+SGE VKPL +++ +AL
Sbjct: 134 ISKNTDDKAGQEALKNVFRAAEAVEEFGGILTSIKMEIDDSIGMSGEGVKPLPNDITDAL 193

Query: 195 HTVHDRYTTYLDAFGPEENYLRKKVETELGTKMIYLKMRCSGLGSEWGKVSVLGTSGLSG 242
            T + RY  YLD+F PEE YL+KKVE ELGTKMI+LKMRCSGLGSEWGKV+VLGTSGLSG
Sbjct: 194 RTAYQRYAEYLDSFEPEEVYLKKKVEMELGTKMIHLKMRCSGLGSEWGKVTVLGTSGLSG 253

[Close]

BLAST of MS018908 vs. ExPASy Swiss-Prot
Match: Q0JDA2 (Succinate dehydrogenase subunit 5, mitochondrial OS=Oryza sativa subsp. japonica OX=39947 GN=SDH5 PE=1 SV=1)

HSP 1 Score: 222.2 bits (565), Expect = 6.1e-57
Identity = 104/171 (60.82%), Postives = 137/171 (80.12%), Query Frame = 0


Query: 71  RFFSVDVVHMPTIEDSKLQNVFKDLMATSWDELPNSIVYDVKAALSGSTDDKAGKEVVEN 130
           R FS +  H+P I D ++++ FKDLMA SW  LP+S+V + K A S +TDDKAGKE + N
Sbjct: 61  RLFSSNEKHLPAISDPEVESAFKDLMAASWTGLPDSLVIEAKKAASKATDDKAGKEALLN 120

Query: 131 VFRAAEAVEEFGGILINLKMKIDDSIGLSGEDVKPLSDELKNALHTVHDRYTTYLDAFGP 190
           VFRAAEA EEFGG+L+ L+M +DD  G++GE+V PL   +++A+ + + RY  YL++FGP
Sbjct: 121 VFRAAEACEEFGGVLVTLRMALDDLCGITGENVGPLPGYIEDAVKSAYKRYMKYLESFGP 180

Query: 191 EENYLRKKVETELGTKMIYLKMRCSGLGSEWGKVSVLGTSGLSGSYVEQRA 242
           EENYLRKKVE ELGTKMI+LKMRCSG+GSEWGK++++GTSG+SGSYVE RA
Sbjct: 181 EENYLRKKVENELGTKMIHLKMRCSGVGSEWGKITLIGTSGISGSYVELRA 231

[Close]

BLAST of MS018908 vs. ExPASy TrEMBL
Match: A0A6J1CS25 (succinate dehydrogenase subunit 5, mitochondrial-like isoform X1 OS=Momordica charantia OX=3673 GN=LOC111014059 PE=4 SV=1)

HSP 1 Score: 471.1 bits (1211), Expect = 2.8e-129
Identity = 240/241 (99.59%), Postives = 241/241 (100.00%), Query Frame = 0


Query: 1   MEKMVILRSLLRSVRVGSYGVAGVRHRNLLQSHHQAARSLFHLSSHRSSVSDSLQRVSSD 60
           MEKM+ILRSLLRSVRVGSYGVAGVRHRNLLQSHHQAARSLFHLSSHRSSVSDSLQRVSSD
Sbjct: 1   MEKMMILRSLLRSVRVGSYGVAGVRHRNLLQSHHQAARSLFHLSSHRSSVSDSLQRVSSD 60

Query: 61  CGYPSGVGRVRFFSVDVVHMPTIEDSKLQNVFKDLMATSWDELPNSIVYDVKAALSGSTD 120
           CGYPSGVGRVRFFSVDVVHMPTIEDSKLQNVFKDLMATSWDELPNSIVYDVKAALSGSTD
Sbjct: 61  CGYPSGVGRVRFFSVDVVHMPTIEDSKLQNVFKDLMATSWDELPNSIVYDVKAALSGSTD 120

Query: 121 DKAGKEVVENVFRAAEAVEEFGGILINLKMKIDDSIGLSGEDVKPLSDELKNALHTVHDR 180
           DKAGKEVVENVFRAAEAVEEFGGILINLKMKIDDSIGLSGEDVKPLSDELKNALHTVHDR
Sbjct: 121 DKAGKEVVENVFRAAEAVEEFGGILINLKMKIDDSIGLSGEDVKPLSDELKNALHTVHDR 180

Query: 181 YTTYLDAFGPEENYLRKKVETELGTKMIYLKMRCSGLGSEWGKVSVLGTSGLSGSYVEQR 240
           YTTYLDAFGPEENYLRKKVETELGTKMIYLKMRCSGLGSEWGKVSVLGTSGLSGSYVEQR
Sbjct: 181 YTTYLDAFGPEENYLRKKVETELGTKMIYLKMRCSGLGSEWGKVSVLGTSGLSGSYVEQR 240

Query: 241 A 242
           A
Sbjct: 241 A 241

[Close]

BLAST of MS018908 vs. ExPASy TrEMBL
Match: A0A6J1CRE2 (succinate dehydrogenase subunit 5, mitochondrial-like isoform X2 OS=Momordica charantia OX=3673 GN=LOC111014059 PE=4 SV=1)

HSP 1 Score: 444.5 bits (1142), Expect = 2.8e-121
Identity = 232/241 (96.27%), Postives = 233/241 (96.68%), Query Frame = 0


Query: 1   MEKMVILRSLLRSVRVGSYGVAGVRHRNLLQSHHQAARSLFHLSSHRSSVSDSLQRVSSD 60
           MEKM+ILRSLLRSVRVGSYGVAGVRHRNLLQSHHQAARSLFHLSSHRSSVSDSLQRVSS 
Sbjct: 1   MEKMMILRSLLRSVRVGSYGVAGVRHRNLLQSHHQAARSLFHLSSHRSSVSDSLQRVSS- 60

Query: 61  CGYPSGVGRVRFFSVDVVHMPTIEDSKLQNVFKDLMATSWDELPNSIVYDVKAALSGSTD 120
                  GRVRFFSVDVVHMPTIEDSKLQNVFKDLMATSWDELPNSIVYDVKAALSGSTD
Sbjct: 61  -------GRVRFFSVDVVHMPTIEDSKLQNVFKDLMATSWDELPNSIVYDVKAALSGSTD 120

Query: 121 DKAGKEVVENVFRAAEAVEEFGGILINLKMKIDDSIGLSGEDVKPLSDELKNALHTVHDR 180
           DKAGKEVVENVFRAAEAVEEFGGILINLKMKIDDSIGLSGEDVKPLSDELKNALHTVHDR
Sbjct: 121 DKAGKEVVENVFRAAEAVEEFGGILINLKMKIDDSIGLSGEDVKPLSDELKNALHTVHDR 180

Query: 181 YTTYLDAFGPEENYLRKKVETELGTKMIYLKMRCSGLGSEWGKVSVLGTSGLSGSYVEQR 240
           YTTYLDAFGPEENYLRKKVETELGTKMIYLKMRCSGLGSEWGKVSVLGTSGLSGSYVEQR
Sbjct: 181 YTTYLDAFGPEENYLRKKVETELGTKMIYLKMRCSGLGSEWGKVSVLGTSGLSGSYVEQR 233

Query: 241 A 242
           A
Sbjct: 241 A 233

[Close]

BLAST of MS018908 vs. ExPASy TrEMBL
Match: A0A6J1C282 (succinate dehydrogenase subunit 5, mitochondrial-like isoform X1 OS=Momordica charantia OX=3673 GN=LOC111007602 PE=4 SV=1)

HSP 1 Score: 439.9 bits (1130), Expect = 6.9e-120
Identity = 226/241 (93.78%), Postives = 232/241 (96.27%), Query Frame = 0


Query: 1   MEKMVILRSLLRSVRVGSYGVAGVRHRNLLQSHHQAARSLFHLSSHRSSVSDSLQRVSSD 60
           MEKMVILRSLLRSVRVGSYGVAGVRHRNLLQSHHQAARS F+LSSHRSS+SD  QRVSSD
Sbjct: 1   MEKMVILRSLLRSVRVGSYGVAGVRHRNLLQSHHQAARSFFYLSSHRSSLSDFPQRVSSD 60

Query: 61  CGYPSGVGRVRFFSVDVVHMPTIEDSKLQNVFKDLMATSWDELPNSIVYDVKAALSGSTD 120
           C Y SGVGR R FSVDVV M TIEDSKLQNVFKDLMATSWDELPNS+VYDVKAALSGSTD
Sbjct: 61  CCYLSGVGRARLFSVDVVRMATIEDSKLQNVFKDLMATSWDELPNSVVYDVKAALSGSTD 120

Query: 121 DKAGKEVVENVFRAAEAVEEFGGILINLKMKIDDSIGLSGEDVKPLSDELKNALHTVHDR 180
           DKAGKEVVENVFRAAEAVEEFGGILI+LKMKIDDSIGLSGEDVKPLSDELKNALHTVHDR
Sbjct: 121 DKAGKEVVENVFRAAEAVEEFGGILISLKMKIDDSIGLSGEDVKPLSDELKNALHTVHDR 180

Query: 181 YTTYLDAFGPEENYLRKKVETELGTKMIYLKMRCSGLGSEWGKVSVLGTSGLSGSYVEQR 240
           YTTYLDAFGPEENYLRKKVET+LGTKMIYLK+RCSGLGSEWGKVSVLGTSGLSGSYVEQR
Sbjct: 181 YTTYLDAFGPEENYLRKKVETDLGTKMIYLKIRCSGLGSEWGKVSVLGTSGLSGSYVEQR 240

Query: 241 A 242
           A
Sbjct: 241 A 241

[Close]

BLAST of MS018908 vs. ExPASy TrEMBL
Match: A0A6J1C1T2 (succinate dehydrogenase subunit 5, mitochondrial-like isoform X2 OS=Momordica charantia OX=3673 GN=LOC111007602 PE=4 SV=1)

HSP 1 Score: 420.6 bits (1080), Expect = 4.3e-114
Identity = 220/241 (91.29%), Postives = 226/241 (93.78%), Query Frame = 0


Query: 1   MEKMVILRSLLRSVRVGSYGVAGVRHRNLLQSHHQAARSLFHLSSHRSSVSDSLQRVSSD 60
           MEKMVILRSLLRSVRVGSYGVAGVRHRNLLQSHHQAARS F+LSSHRSS+SD  QRVSS 
Sbjct: 1   MEKMVILRSLLRSVRVGSYGVAGVRHRNLLQSHHQAARSFFYLSSHRSSLSDFPQRVSS- 60

Query: 61  CGYPSGVGRVRFFSVDVVHMPTIEDSKLQNVFKDLMATSWDELPNSIVYDVKAALSGSTD 120
                  GR R FSVDVV M TIEDSKLQNVFKDLMATSWDELPNS+VYDVKAALSGSTD
Sbjct: 61  -------GRARLFSVDVVRMATIEDSKLQNVFKDLMATSWDELPNSVVYDVKAALSGSTD 120

Query: 121 DKAGKEVVENVFRAAEAVEEFGGILINLKMKIDDSIGLSGEDVKPLSDELKNALHTVHDR 180
           DKAGKEVVENVFRAAEAVEEFGGILI+LKMKIDDSIGLSGEDVKPLSDELKNALHTVHDR
Sbjct: 121 DKAGKEVVENVFRAAEAVEEFGGILISLKMKIDDSIGLSGEDVKPLSDELKNALHTVHDR 180

Query: 181 YTTYLDAFGPEENYLRKKVETELGTKMIYLKMRCSGLGSEWGKVSVLGTSGLSGSYVEQR 240
           YTTYLDAFGPEENYLRKKVET+LGTKMIYLK+RCSGLGSEWGKVSVLGTSGLSGSYVEQR
Sbjct: 181 YTTYLDAFGPEENYLRKKVETDLGTKMIYLKIRCSGLGSEWGKVSVLGTSGLSGSYVEQR 233

Query: 241 A 242
           A
Sbjct: 241 A 233

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BLAST of MS018908 vs. ExPASy TrEMBL
Match: A0A6J1KS18 (succinate dehydrogenase subunit 5, mitochondrial-like OS=Cucurbita maxima OX=3661 GN=LOC111495971 PE=4 SV=1)

HSP 1 Score: 410.6 bits (1054), Expect = 4.5e-111
Identity = 208/241 (86.31%), Postives = 221/241 (91.70%), Query Frame = 0


Query: 1   MEKMVILRSLLRSVRVGSYGVAGVRHRNLLQSHHQAARSLFHLSSHRSSVSDSLQRVSSD 60
           MEKMV+LRSLLRSVR GSY +AGVRHR+LLQSH+QAAR+  HLSS RSS SDS QRVS D
Sbjct: 1   MEKMVVLRSLLRSVRAGSYSIAGVRHRSLLQSHYQAARNFSHLSSPRSSFSDSPQRVSYD 60

Query: 61  CGYPSGVGRVRFFSVDVVHMPTIEDSKLQNVFKDLMATSWDELPNSIVYDVKAALSGSTD 120
           CGY SGVG  RFFSVDV HMPTIEDSKLQN FKDLMA SWD LP S+VYDVK ALSGST+
Sbjct: 61  CGYLSGVGHARFFSVDVAHMPTIEDSKLQNAFKDLMAASWDNLPESVVYDVKVALSGSTN 120

Query: 121 DKAGKEVVENVFRAAEAVEEFGGILINLKMKIDDSIGLSGEDVKPLSDELKNALHTVHDR 180
           D+AGKE+VENVFRAAEA EEFGGIL +LKMKIDDSIGLSGEDVKPLSDELKNAL TVHDR
Sbjct: 121 DEAGKEIVENVFRAAEASEEFGGILTSLKMKIDDSIGLSGEDVKPLSDELKNALQTVHDR 180

Query: 181 YTTYLDAFGPEENYLRKKVETELGTKMIYLKMRCSGLGSEWGKVSVLGTSGLSGSYVEQR 240
           YT+YLDAFGPEENYL+KKVETELGTKMI+LKMRCSGLGSEWGKVSVLGTSGLSGSYVEQR
Sbjct: 181 YTSYLDAFGPEENYLKKKVETELGTKMIHLKMRCSGLGSEWGKVSVLGTSGLSGSYVEQR 240

Query: 241 A 242
           A
Sbjct: 241 A 241

[Close]

BLAST of MS018908 vs. TAIR 10
Match: AT1G47420.1 (succinate dehydrogenase 5 )

HSP 1 Score: 259.2 bits (661), Expect = 3.2e-69
Identity = 142/247 (57.49%), Postives = 173/247 (70.04%), Query Frame = 0


Query: 15  RVGSYGVAGVRHRNLLQSHHQAARSLFHLSSHRSSVS------------------DSLQR 74
           R+     A  R  +LLQ  H   +   HLS HR+ ++                   S   
Sbjct: 14  RIRGTAQAQARVGSLLQGSHHIEK---HLSRHRTLITVAPNASVIGDVQINKGSFISYAS 73

Query: 75  VSSDCGYP--SGVGRVRFFSVDVVHMPTIEDSKLQNVFKDLMATSWDELPNSIVYDVKAA 134
           VS D  YP   G+G+VR FS DV HMP +EDS + N FKDLMA  W ELP+++V D K A
Sbjct: 74  VSRDLQYPRAMGMGQVRRFSEDVSHMPEMEDSDVLNAFKDLMAADWAELPSAVVKDAKTA 133

Query: 135 LSGSTDDKAGKEVVENVFRAAEAVEEFGGILINLKMKIDDSIGLSGEDVKPLSDELKNAL 194
           +S +TDDKAG+E ++NVFRAAEAVEEFGGIL ++KM+IDDSIG+SGE VKPL +++ +AL
Sbjct: 134 ISKNTDDKAGQEALKNVFRAAEAVEEFGGILTSIKMEIDDSIGMSGEGVKPLPNDITDAL 193

Query: 195 HTVHDRYTTYLDAFGPEENYLRKKVETELGTKMIYLKMRCSGLGSEWGKVSVLGTSGLSG 242
            T + RY  YLD+F PEE YL+KKVE ELGTKMI+LKMRCSGLGSEWGKV+VLGTSGLSG
Sbjct: 194 RTAYQRYAEYLDSFEPEEVYLKKKVEMELGTKMIHLKMRCSGLGSEWGKVTVLGTSGLSG 253

The following BLAST results are available for this feature:

BLAST of MS018908 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022144354.1	5.8e-129	99.59	succinate dehydrogenase subunit 5, mitochondrial-like isoform X1 [Momordica char...	[more]
XP_022144355.1	5.8e-121	96.27	succinate dehydrogenase subunit 5, mitochondrial-like isoform X2 [Momordica char...	[more]
XP_022135709.1	1.4e-119	93.78	succinate dehydrogenase subunit 5, mitochondrial-like isoform X1 [Momordica char...	[more]
XP_022135710.1	9.0e-114	91.29	succinate dehydrogenase subunit 5, mitochondrial-like isoform X2 [Momordica char...	[more]
XP_023001943.1	9.3e-111	86.31	succinate dehydrogenase subunit 5, mitochondrial-like [Cucurbita maxima]	[more]

BLAST of MS018908 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SX77	4.5e-68	57.49	Succinate dehydrogenase subunit 5, mitochondrial OS=Arabidopsis thaliana OX=3702...	[more]
Q0JDA2	6.1e-57	60.82	Succinate dehydrogenase subunit 5, mitochondrial OS=Oryza sativa subsp. japonica...	[more]

BLAST of MS018908 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CS25	2.8e-129	99.59	succinate dehydrogenase subunit 5, mitochondrial-like isoform X1 OS=Momordica ch...	[more]
A0A6J1CRE2	2.8e-121	96.27	succinate dehydrogenase subunit 5, mitochondrial-like isoform X2 OS=Momordica ch...	[more]
A0A6J1C282	6.9e-120	93.78	succinate dehydrogenase subunit 5, mitochondrial-like isoform X1 OS=Momordica ch...	[more]
A0A6J1C1T2	4.3e-114	91.29	succinate dehydrogenase subunit 5, mitochondrial-like isoform X2 OS=Momordica ch...	[more]
A0A6J1KS18	4.5e-111	86.31	succinate dehydrogenase subunit 5, mitochondrial-like OS=Cucurbita maxima OX=366...	[more]

BLAST of MS018908 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G47420.1	3.2e-69	57.49	succinate dehydrogenase 5	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR025397	Succinate dehydrogenase subunit 5, mitochondrial	PFAM	PF14290	DUF4370	coord: 1..241 e-value: 5.2E-109 score: 363.6
IPR025397	Succinate dehydrogenase subunit 5, mitochondrial	PANTHER	PTHR36139	SUCCINATE DEHYDROGENASE SUBUNIT 5, MITOCHONDRIAL	coord: 1..241
None	No IPR available	PANTHER	PTHR36139:SF1	SUCCINATE DEHYDROGENASE SUBUNIT 5, MITOCHONDRIAL	coord: 1..241

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS018908.1	MS018908.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006099	tricarboxylic acid cycle
cellular_component	GO:0045273	respiratory chain complex II