MS018895 (gene) Bitter gourd (TR) v1

Overview
NameMS018895
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Descriptioncalmodulin-like
Locationscaffold89: 253581 .. 253835 (+)
RNA-Seq ExpressionMS018895
SyntenyMS018895
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCACTCTCCAGAACTCGGTTGCAGCTGTCGCGGGAGGAGATGAAGGAGATCTTTAGAGAGCACGATATCGACGGAGATGGTGTCCTCAGCATTAGTGAGCTCACCCAAGCCTTCAGTTTCTTAGGCAATCTTCTTCCATTCTACAAAGCTCACTATGGTCTCGCTTATGCTGATGCTGATGGCGATGGCTTCATCACTGAGGACGAGCTCGACAGGCTCGTCGATTACGCCATGAAATTTCAGAATAAGAAG

mRNA sequence

ATGGCACTCTCCAGAACTCGGTTGCAGCTGTCGCGGGAGGAGATGAAGGAGATCTTTAGAGAGCACGATATCGACGGAGATGGTGTCCTCAGCATTAGTGAGCTCACCCAAGCCTTCAGTTTCTTAGGCAATCTTCTTCCATTCTACAAAGCTCACTATGGTCTCGCTTATGCTGATGCTGATGGCGATGGCTTCATCACTGAGGACGAGCTCGACAGGCTCGTCGATTACGCCATGAAATTTCAGAATAAGAAG

Coding sequence (CDS)

ATGGCACTCTCCAGAACTCGGTTGCAGCTGTCGCGGGAGGAGATGAAGGAGATCTTTAGAGAGCACGATATCGACGGAGATGGTGTCCTCAGCATTAGTGAGCTCACCCAAGCCTTCAGTTTCTTAGGCAATCTTCTTCCATTCTACAAAGCTCACTATGGTCTCGCTTATGCTGATGCTGATGGCGATGGCTTCATCACTGAGGACGAGCTCGACAGGCTCGTCGATTACGCCATGAAATTTCAGAATAAGAAG

Protein sequence

MALSRTRLQLSREEMKEIFREHDIDGDGVLSISELTQAFSFLGNLLPFYKAHYGLAYADADGDGFITEDELDRLVDYAMKFQNKK
Homology
BLAST of MS018895 vs. NCBI nr
Match: XP_004152805.1 (probable calcium-binding protein CML10 [Cucumis sativus])

HSP 1 Score: 128.6 bits (322), Expect = 2.5e-26
Identity = 58/84 (69.05%), Postives = 74/84 (88.10%), Query Frame = 0

Query: 2   ALSRTRLQLSREEMKEIFREHDIDGDGVLSISELTQAFSFLGNLLPFYKAHYGLAYADAD 61
           A+  TRLQLSRE++KEIFREHDIDGDG LS++E+ +AF   G++LPFYKAHYG+A+AD +
Sbjct: 83  AIKSTRLQLSREDIKEIFREHDIDGDGRLSMNEMVKAFGCFGSILPFYKAHYGMAHADEN 142

Query: 62  GDGFITEDELDRLVDYAMKFQNKK 86
           GDGFI E+ELD+LVDYA KFQ+K+
Sbjct: 143 GDGFIEEEELDKLVDYAQKFQHKR 166

BLAST of MS018895 vs. NCBI nr
Match: KGN62516.1 (hypothetical protein Csa_022521 [Cucumis sativus])

HSP 1 Score: 128.3 bits (321), Expect = 3.2e-26
Identity = 58/85 (68.24%), Postives = 75/85 (88.24%), Query Frame = 0

Query: 1  MALSRTRLQLSREEMKEIFREHDIDGDGVLSISELTQAFSFLGNLLPFYKAHYGLAYADA 60
          M+ + TRLQLSRE++KEIFREHDIDGDG LS++E+ +AF   G++LPFYKAHYG+A+AD 
Sbjct: 1  MSRAATRLQLSREDIKEIFREHDIDGDGRLSMNEMVKAFGCFGSILPFYKAHYGMAHADE 60

Query: 61 DGDGFITEDELDRLVDYAMKFQNKK 86
          +GDGFI E+ELD+LVDYA KFQ+K+
Sbjct: 61 NGDGFIEEEELDKLVDYAQKFQHKR 85

BLAST of MS018895 vs. NCBI nr
Match: KAA0060892.1 (putative calcium-binding protein CML10 [Cucumis melo var. makuwa])

HSP 1 Score: 128.3 bits (321), Expect = 3.2e-26
Identity = 57/85 (67.06%), Postives = 76/85 (89.41%), Query Frame = 0

Query: 1  MALSRTRLQLSREEMKEIFREHDIDGDGVLSISELTQAFSFLGNLLPFYKAHYGLAYADA 60
          M+ + ++LQLSRE++KEIFREHDIDGDG LS+SE+ +AF F G++LPFYKAHYG+A+AD 
Sbjct: 1  MSRAASKLQLSREDIKEIFREHDIDGDGRLSLSEMVKAFGFFGSILPFYKAHYGMAHADE 60

Query: 61 DGDGFITEDELDRLVDYAMKFQNKK 86
          +GDG+I E+ELD+LVDYA KFQ+K+
Sbjct: 61 NGDGYIEEEELDKLVDYAEKFQHKR 85

BLAST of MS018895 vs. NCBI nr
Match: KGN62525.1 (hypothetical protein Csa_022453 [Cucumis sativus])

HSP 1 Score: 121.7 bits (304), Expect = 3.0e-24
Identity = 54/80 (67.50%), Postives = 67/80 (83.75%), Query Frame = 0

Query: 6  TRLQLSREEMKEIFREHDIDGDGVLSISELTQAFSFLGNLLPFYKAHYGLAYADADGDGF 65
          ++   SREEMKEIFREHDIDGDG LSISEL +A  FLG+ +PFYKAHYG+AY D +GDG 
Sbjct: 7  SKFNFSREEMKEIFREHDIDGDGYLSISELIKAMGFLGHSIPFYKAHYGMAYCDENGDGL 66

Query: 66 ITEDELDRLVDYAMKFQNKK 86
          I+EDELD+L+DYA +FQ ++
Sbjct: 67 ISEDELDKLIDYAERFQKRR 86

BLAST of MS018895 vs. NCBI nr
Match: XP_023002888.1 (calmodulin-like [Cucurbita maxima])

HSP 1 Score: 120.6 bits (301), Expect = 6.8e-24
Identity = 54/78 (69.23%), Postives = 68/78 (87.18%), Query Frame = 0

Query: 8   LQLSREEMKEIFREHDIDGDGVLSISELTQAFSFLGNLLPFYKAHYGLAYADADGDGFIT 67
           ++LSR ++KEIF EHDIDGDG LS+SELT+AFSF G+++P YKAHYGLAYADADGDG I+
Sbjct: 83  MKLSRSQIKEIFMEHDIDGDGYLSVSELTKAFSFFGSIIPLYKAHYGLAYADADGDGLIS 142

Query: 68  EDELDRLVDYAMKFQNKK 86
           E+EL++LVDYA +   KK
Sbjct: 143 EEELEKLVDYAERTNKKK 160

BLAST of MS018895 vs. ExPASy Swiss-Prot
Match: Q8RZB5 (Probable calcium-binding protein CML10 OS=Oryza sativa subsp. japonica OX=39947 GN=CML10 PE=2 SV=1)

HSP 1 Score: 52.8 bits (125), Expect = 2.3e-06
Identity = 29/62 (46.77%), Postives = 38/62 (61.29%), Query Frame = 0

Query: 13  EEMKEIFREHDIDGDGVLSISELTQAFSFLGNLLPFYKAHYGLAYADADGDGFITEDELD 72
           EEM+ +FR+ D +GDG +S SEL   F  LG+     +    +A ADADGDGFI+ DE  
Sbjct: 39  EEMERVFRKFDANGDGRISRSELGALFESLGHAATDDELARMMAEADADGDGFISLDEFA 98

Query: 73  RL 75
            L
Sbjct: 99  AL 100

BLAST of MS018895 vs. ExPASy Swiss-Prot
Match: P05933 (Calmodulin OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=cam1 PE=1 SV=1)

HSP 1 Score: 48.1 bits (113), Expect = 5.6e-05
Identity = 23/65 (35.38%), Postives = 37/65 (56.92%), Query Frame = 0

Query: 11  SREEMKEIFREHDIDGDGVLSISELTQAFSFLGNLLPFYKAHYGLAYADADGDGFITEDE 70
           + EE++E F+  D DG+G +++ ELT   + LG  L   +    +  AD DGDG I  +E
Sbjct: 83  NEEEVREAFKVFDKDGNGYITVEELTHVLTSLGERLSQEEVADMIREADTDGDGVINYEE 142

Query: 71  LDRLV 76
             R++
Sbjct: 143 FSRVI 147

BLAST of MS018895 vs. ExPASy Swiss-Prot
Match: Q9S744 (Calmodulin-like protein 9 OS=Arabidopsis thaliana OX=3702 GN=CML9 PE=1 SV=1)

HSP 1 Score: 47.4 bits (111), Expect = 9.6e-05
Identity = 23/70 (32.86%), Postives = 41/70 (58.57%), Query Frame = 0

Query: 6   TRLQLSREEMKEIFREHDIDGDGVLSISELTQAFSFLGNLLPFYKAHYGLAYADADGDGF 65
           T  + + +E+ E+FR  D DGDG++S  EL +    +G  +   +A + +  AD DGDGF
Sbjct: 77  TSQESASDELIEVFRVFDRDGDGLISQLELGEGMKDMGMKITAEEAEHMVREADLDGDGF 136

Query: 66  ITEDELDRLV 76
           ++  E  +++
Sbjct: 137 LSFHEFSKMM 146

BLAST of MS018895 vs. ExPASy Swiss-Prot
Match: Q8X187 (Calmodulin OS=Paxillus involutus OX=71150 GN=calA PE=2 SV=3)

HSP 1 Score: 46.6 bits (109), Expect = 1.6e-04
Identity = 25/65 (38.46%), Postives = 36/65 (55.38%), Query Frame = 0

Query: 11  SREEMKEIFREHDIDGDGVLSISELTQAFSFLGNLLPFYKAHYGLAYADADGDGFITEDE 70
           S EE+KE F+  D DG+G +S +EL    + LG  L   +    +  AD DGDG I  DE
Sbjct: 82  SEEEIKEAFKVFDKDGNGYISAAELRHVMTNLGEKLTDTEVDEMIREADVDGDGQINYDE 141

Query: 71  LDRLV 76
             +++
Sbjct: 142 FVKMM 146

BLAST of MS018895 vs. ExPASy Swiss-Prot
Match: P62184 (Calmodulin OS=Renilla reniformis OX=6136 PE=1 SV=2)

HSP 1 Score: 46.2 bits (108), Expect = 2.1e-04
Identity = 24/65 (36.92%), Postives = 36/65 (55.38%), Query Frame = 0

Query: 11  SREEMKEIFREHDIDGDGVLSISELTQAFSFLGNLLPFYKAHYGLAYADADGDGFITEDE 70
           S EE++E FR  D DGDG +S +EL    + LG  L   +    +  AD DGDG +  +E
Sbjct: 82  SEEEIREAFRVFDKDGDGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEE 141

Query: 71  LDRLV 76
             +++
Sbjct: 142 FVKMM 146

BLAST of MS018895 vs. ExPASy TrEMBL
Match: A0A5A7UYC0 (Putative calcium-binding protein CML10 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold501G00250 PE=4 SV=1)

HSP 1 Score: 128.3 bits (321), Expect = 1.6e-26
Identity = 57/85 (67.06%), Postives = 76/85 (89.41%), Query Frame = 0

Query: 1  MALSRTRLQLSREEMKEIFREHDIDGDGVLSISELTQAFSFLGNLLPFYKAHYGLAYADA 60
          M+ + ++LQLSRE++KEIFREHDIDGDG LS+SE+ +AF F G++LPFYKAHYG+A+AD 
Sbjct: 1  MSRAASKLQLSREDIKEIFREHDIDGDGRLSLSEMVKAFGFFGSILPFYKAHYGMAHADE 60

Query: 61 DGDGFITEDELDRLVDYAMKFQNKK 86
          +GDG+I E+ELD+LVDYA KFQ+K+
Sbjct: 61 NGDGYIEEEELDKLVDYAEKFQHKR 85

BLAST of MS018895 vs. ExPASy TrEMBL
Match: A0A0A0LRC1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G358870 PE=4 SV=1)

HSP 1 Score: 128.3 bits (321), Expect = 1.6e-26
Identity = 58/85 (68.24%), Postives = 75/85 (88.24%), Query Frame = 0

Query: 1  MALSRTRLQLSREEMKEIFREHDIDGDGVLSISELTQAFSFLGNLLPFYKAHYGLAYADA 60
          M+ + TRLQLSRE++KEIFREHDIDGDG LS++E+ +AF   G++LPFYKAHYG+A+AD 
Sbjct: 1  MSRAATRLQLSREDIKEIFREHDIDGDGRLSMNEMVKAFGCFGSILPFYKAHYGMAHADE 60

Query: 61 DGDGFITEDELDRLVDYAMKFQNKK 86
          +GDGFI E+ELD+LVDYA KFQ+K+
Sbjct: 61 NGDGFIEEEELDKLVDYAQKFQHKR 85

BLAST of MS018895 vs. ExPASy TrEMBL
Match: A0A0A0LKX1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G359940 PE=4 SV=1)

HSP 1 Score: 121.7 bits (304), Expect = 1.5e-24
Identity = 54/80 (67.50%), Postives = 67/80 (83.75%), Query Frame = 0

Query: 6  TRLQLSREEMKEIFREHDIDGDGVLSISELTQAFSFLGNLLPFYKAHYGLAYADADGDGF 65
          ++   SREEMKEIFREHDIDGDG LSISEL +A  FLG+ +PFYKAHYG+AY D +GDG 
Sbjct: 7  SKFNFSREEMKEIFREHDIDGDGYLSISELIKAMGFLGHSIPFYKAHYGMAYCDENGDGL 66

Query: 66 ITEDELDRLVDYAMKFQNKK 86
          I+EDELD+L+DYA +FQ ++
Sbjct: 67 ISEDELDKLIDYAERFQKRR 86

BLAST of MS018895 vs. ExPASy TrEMBL
Match: A0A6J1KUW2 (calmodulin-like OS=Cucurbita maxima OX=3661 GN=LOC111496626 PE=4 SV=1)

HSP 1 Score: 120.6 bits (301), Expect = 3.3e-24
Identity = 54/78 (69.23%), Postives = 68/78 (87.18%), Query Frame = 0

Query: 8   LQLSREEMKEIFREHDIDGDGVLSISELTQAFSFLGNLLPFYKAHYGLAYADADGDGFIT 67
           ++LSR ++KEIF EHDIDGDG LS+SELT+AFSF G+++P YKAHYGLAYADADGDG I+
Sbjct: 83  MKLSRSQIKEIFMEHDIDGDGYLSVSELTKAFSFFGSIIPLYKAHYGLAYADADGDGLIS 142

Query: 68  EDELDRLVDYAMKFQNKK 86
           E+EL++LVDYA +   KK
Sbjct: 143 EEELEKLVDYAERTNKKK 160

BLAST of MS018895 vs. ExPASy TrEMBL
Match: A0A6J1GK16 (calmodulin-like OS=Cucurbita moschata OX=3662 GN=LOC111454616 PE=4 SV=1)

HSP 1 Score: 120.6 bits (301), Expect = 3.3e-24
Identity = 54/78 (69.23%), Postives = 68/78 (87.18%), Query Frame = 0

Query: 8   LQLSREEMKEIFREHDIDGDGVLSISELTQAFSFLGNLLPFYKAHYGLAYADADGDGFIT 67
           ++LSR ++KEIF EHDIDGDG LS+SELT+AFSF G+++P YKAHYGLAYADADGDG I+
Sbjct: 83  MKLSRSQIKEIFMEHDIDGDGYLSVSELTKAFSFFGSIIPLYKAHYGLAYADADGDGLIS 142

Query: 68  EDELDRLVDYAMKFQNKK 86
           E+EL++LVDYA +   KK
Sbjct: 143 EEELEKLVDYAERTNKKK 160

BLAST of MS018895 vs. TAIR 10
Match: AT3G51920.1 (calmodulin 9 )

HSP 1 Score: 47.4 bits (111), Expect = 6.8e-06
Identity = 23/70 (32.86%), Postives = 41/70 (58.57%), Query Frame = 0

Query: 6   TRLQLSREEMKEIFREHDIDGDGVLSISELTQAFSFLGNLLPFYKAHYGLAYADADGDGF 65
           T  + + +E+ E+FR  D DGDG++S  EL +    +G  +   +A + +  AD DGDGF
Sbjct: 77  TSQESASDELIEVFRVFDRDGDGLISQLELGEGMKDMGMKITAEEAEHMVREADLDGDGF 136

Query: 66  ITEDELDRLV 76
           ++  E  +++
Sbjct: 137 LSFHEFSKMM 146

BLAST of MS018895 vs. TAIR 10
Match: AT5G17470.1 (EF hand calcium-binding protein family )

HSP 1 Score: 45.4 bits (106), Expect = 2.6e-05
Identity = 27/71 (38.03%), Postives = 36/71 (50.70%), Query Frame = 0

Query: 15  MKEIFREHDIDGDGVLSISELTQAFSFLGNLLPFYKAHYGLAYADADGDGFITEDELDRL 74
           MKE F  +DIDGDG +S SE+      LG      +    +   DADGDGF++ +E   +
Sbjct: 78  MKEAFDLYDIDGDGKISASEIHVVLKRLGEKQTIAECIAMVRAVDADGDGFVSFEEFKTM 137

Query: 75  VDYAMKFQNKK 86
               M   NKK
Sbjct: 138 ----MSCNNKK 144

BLAST of MS018895 vs. TAIR 10
Match: AT1G66410.1 (calmodulin 4 )

HSP 1 Score: 43.9 bits (102), Expect = 7.5e-05
Identity = 24/65 (36.92%), Postives = 35/65 (53.85%), Query Frame = 0

Query: 11  SREEMKEIFREHDIDGDGVLSISELTQAFSFLGNLLPFYKAHYGLAYADADGDGFITEDE 70
           S EE+KE FR  D D +G +S +EL    + LG  L   +    +  AD DGDG I  +E
Sbjct: 82  SEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVEEMIREADVDGDGQINYEE 141

Query: 71  LDRLV 76
             +++
Sbjct: 142 FVKIM 146

BLAST of MS018895 vs. TAIR 10
Match: AT1G66410.2 (calmodulin 4 )

HSP 1 Score: 43.9 bits (102), Expect = 7.5e-05
Identity = 24/65 (36.92%), Postives = 35/65 (53.85%), Query Frame = 0

Query: 11  SREEMKEIFREHDIDGDGVLSISELTQAFSFLGNLLPFYKAHYGLAYADADGDGFITEDE 70
           S EE+KE FR  D D +G +S +EL    + LG  L   +    +  AD DGDG I  +E
Sbjct: 92  SEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVEEMIREADVDGDGQINYEE 151

Query: 71  LDRLV 76
             +++
Sbjct: 152 FVKIM 156

BLAST of MS018895 vs. TAIR 10
Match: AT5G37780.1 (calmodulin 1 )

HSP 1 Score: 43.9 bits (102), Expect = 7.5e-05
Identity = 24/65 (36.92%), Postives = 35/65 (53.85%), Query Frame = 0

Query: 11  SREEMKEIFREHDIDGDGVLSISELTQAFSFLGNLLPFYKAHYGLAYADADGDGFITEDE 70
           S EE+KE FR  D D +G +S +EL    + LG  L   +    +  AD DGDG I  +E
Sbjct: 82  SEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVEEMIREADVDGDGQINYEE 141

Query: 71  LDRLV 76
             +++
Sbjct: 142 FVKIM 146

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_004152805.12.5e-2669.05probable calcium-binding protein CML10 [Cucumis sativus][more]
KGN62516.13.2e-2668.24hypothetical protein Csa_022521 [Cucumis sativus][more]
KAA0060892.13.2e-2667.06putative calcium-binding protein CML10 [Cucumis melo var. makuwa][more]
KGN62525.13.0e-2467.50hypothetical protein Csa_022453 [Cucumis sativus][more]
XP_023002888.16.8e-2469.23calmodulin-like [Cucurbita maxima][more]
Match NameE-valueIdentityDescription
Q8RZB52.3e-0646.77Probable calcium-binding protein CML10 OS=Oryza sativa subsp. japonica OX=39947 ... [more]
P059335.6e-0535.38Calmodulin OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=c... [more]
Q9S7449.6e-0532.86Calmodulin-like protein 9 OS=Arabidopsis thaliana OX=3702 GN=CML9 PE=1 SV=1[more]
Q8X1871.6e-0438.46Calmodulin OS=Paxillus involutus OX=71150 GN=calA PE=2 SV=3[more]
P621842.1e-0436.92Calmodulin OS=Renilla reniformis OX=6136 PE=1 SV=2[more]
Match NameE-valueIdentityDescription
A0A5A7UYC01.6e-2667.06Putative calcium-binding protein CML10 OS=Cucumis melo var. makuwa OX=1194695 GN... [more]
A0A0A0LRC11.6e-2668.24Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G358870 PE=4 SV=1[more]
A0A0A0LKX11.5e-2467.50Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G359940 PE=4 SV=1[more]
A0A6J1KUW23.3e-2469.23calmodulin-like OS=Cucurbita maxima OX=3661 GN=LOC111496626 PE=4 SV=1[more]
A0A6J1GK163.3e-2469.23calmodulin-like OS=Cucurbita moschata OX=3662 GN=LOC111454616 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT3G51920.16.8e-0632.86calmodulin 9 [more]
AT5G17470.12.6e-0538.03EF hand calcium-binding protein family [more]
AT1G66410.17.5e-0536.92calmodulin 4 [more]
AT1G66410.27.5e-0536.92calmodulin 4 [more]
AT5G37780.17.5e-0536.92calmodulin 1 [more]
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D1.10.238.10coord: 1..83
e-value: 4.9E-13
score: 51.4
IPR002048EF-hand domainPFAMPF13405EF-hand_6coord: 14..43
e-value: 4.5E-7
score: 29.2
IPR002048EF-hand domainPFAMPF13202EF-hand_5coord: 58..75
e-value: 2.7E-4
score: 20.3
IPR002048EF-hand domainPROSITEPS50222EF_HAND_2coord: 10..45
score: 14.84815
IPR002048EF-hand domainPROSITEPS50222EF_HAND_2coord: 59..81
score: 8.348522
IPR018247EF-Hand 1, calcium-binding sitePROSITEPS00018EF_HAND_1coord: 59..71
IPR018247EF-Hand 1, calcium-binding sitePROSITEPS00018EF_HAND_1coord: 23..35
IPR011992EF-hand domain pairSUPERFAMILY47473EF-handcoord: 8..73

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS018895.1MS018895.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005509 calcium ion binding