MS018873 (gene) Bitter gourd (TR) v1

Overview


Name	MS018873
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Protein kinase superfamily protein
Location	scaffold89: 76561 .. 76683 (+)
RNA-Seq Expression	MS018873
Synteny	MS018873

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

TTAACCTACCTGCACGAGGGGCTTGAGCCTAAGGTGGTTCACCGTGATATCAAGTCAAGTAACATTTTGCTCGACAAGCAATGGAATCCAAAGGTCTCTGACTTCGGCCTAGCAAAGCTTCTC

mRNA sequence

TTAACCTACCTGCACGAGGGGCTTGAGCCTAAGGTGGTTCACCGTGATATCAAGTCAAGTAACATTTTGCTCGACAAGCAATGGAATCCAAAGGTCTCTGACTTCGGCCTAGCAAAGCTTCTC

Coding sequence (CDS)

TTAACCTACCTGCACGAGGGGCTTGAGCCTAAGGTGGTTCACCGTGATATCAAGTCAAGTAACATTTTGCTCGACAAGCAATGGAATCCAAAGGTCTCTGACTTCGGCCTAGCAAAGCTTCTC

Protein sequence

LTYLHEGLEPKVVHRDIKSSNILLDKQWNPKVSDFGLAKLL

Homology

[Close]

BLAST of MS018873 vs. NCBI nr
Match: XP_034897591.1 (probable serine/threonine-protein kinase At1g01540 [Populus alba] >XP_034897599.1 probable serine/threonine-protein kinase At1g01540 [Populus alba])

HSP 1 Score: 88.2 bits (217), Expect = 1.8e-14
Identity = 41/41 (100.00%), Postives = 41/41 (100.00%), Query Frame = 0


Query: 1   LTYLHEGLEPKVVHRDIKSSNILLDKQWNPKVSDFGLAKLL 42
           LTYLHEGLEPKVVHRDIKSSNILLDKQWNPKVSDFGLAKLL
Sbjct: 300 LTYLHEGLEPKVVHRDIKSSNILLDKQWNPKVSDFGLAKLL 340

[Close]

BLAST of MS018873 vs. NCBI nr
Match: MBA0775289.1 (hypothetical protein [Gossypium trilobum])

HSP 1 Score: 88.2 bits (217), Expect = 1.8e-14
Identity = 41/41 (100.00%), Postives = 41/41 (100.00%), Query Frame = 0


Query: 1   LTYLHEGLEPKVVHRDIKSSNILLDKQWNPKVSDFGLAKLL 42
           LTYLHEGLEPKVVHRDIKSSNILLDKQWNPKVSDFGLAKLL
Sbjct: 274 LTYLHEGLEPKVVHRDIKSSNILLDKQWNPKVSDFGLAKLL 314

[Close]

BLAST of MS018873 vs. NCBI nr
Match: KJB58528.1 (hypothetical protein B456_009G213700 [Gossypium raimondii])

HSP 1 Score: 88.2 bits (217), Expect = 1.8e-14
Identity = 41/41 (100.00%), Postives = 41/41 (100.00%), Query Frame = 0


Query: 1   LTYLHEGLEPKVVHRDIKSSNILLDKQWNPKVSDFGLAKLL 42
           LTYLHEGLEPKVVHRDIKSSNILLDKQWNPKVSDFGLAKLL
Sbjct: 300 LTYLHEGLEPKVVHRDIKSSNILLDKQWNPKVSDFGLAKLL 340

[Close]

BLAST of MS018873 vs. NCBI nr
Match: KAG8494138.1 (hypothetical protein CXB51_011808 [Gossypium anomalum])

HSP 1 Score: 88.2 bits (217), Expect = 1.8e-14
Identity = 41/41 (100.00%), Postives = 41/41 (100.00%), Query Frame = 0


Query: 1   LTYLHEGLEPKVVHRDIKSSNILLDKQWNPKVSDFGLAKLL 42
           LTYLHEGLEPKVVHRDIKSSNILLDKQWNPKVSDFGLAKLL
Sbjct: 300 LTYLHEGLEPKVVHRDIKSSNILLDKQWNPKVSDFGLAKLL 340

[Close]

BLAST of MS018873 vs. NCBI nr
Match: XP_016687761.1 (probable serine/threonine-protein kinase At1g01540 [Gossypium hirsutum] >KAG4147196.1 hypothetical protein ERO13_D05G207100v2 [Gossypium hirsutum])

HSP 1 Score: 88.2 bits (217), Expect = 1.8e-14
Identity = 41/41 (100.00%), Postives = 41/41 (100.00%), Query Frame = 0


Query: 1   LTYLHEGLEPKVVHRDIKSSNILLDKQWNPKVSDFGLAKLL 42
           LTYLHEGLEPKVVHRDIKSSNILLDKQWNPKVSDFGLAKLL
Sbjct: 300 LTYLHEGLEPKVVHRDIKSSNILLDKQWNPKVSDFGLAKLL 340

[Close]

BLAST of MS018873 vs. ExPASy Swiss-Prot
Match: Q3EDL4 (Probable serine/threonine-protein kinase At1g01540 OS=Arabidopsis thaliana OX=3702 GN=At1g01540 PE=1 SV=2)

HSP 1 Score: 82.0 bits (201), Expect = 1.7e-15
Identity = 38/41 (92.68%), Postives = 39/41 (95.12%), Query Frame = 0


Query: 1   LTYLHEGLEPKVVHRDIKSSNILLDKQWNPKVSDFGLAKLL 42
           L YLHEGLEPKVVHRDIKSSNILLD+QWN KVSDFGLAKLL
Sbjct: 265 LAYLHEGLEPKVVHRDIKSSNILLDRQWNAKVSDFGLAKLL 305

[Close]

BLAST of MS018873 vs. ExPASy Swiss-Prot
Match: Q6NKZ9 (Probable receptor-like serine/threonine-protein kinase At4g34500 OS=Arabidopsis thaliana OX=3702 GN=At4g34500 PE=2 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 2.9e-15
Identity = 37/41 (90.24%), Postives = 39/41 (95.12%), Query Frame = 0


Query: 1   LTYLHEGLEPKVVHRDIKSSNILLDKQWNPKVSDFGLAKLL 42
           L YLHEGLEPKVVHRD+KSSNILLDK+WN KVSDFGLAKLL
Sbjct: 258 LAYLHEGLEPKVVHRDVKSSNILLDKKWNAKVSDFGLAKLL 298

[Close]

BLAST of MS018873 vs. ExPASy Swiss-Prot
Match: Q8LEB6 (Probable receptor-like protein kinase At5g18500 OS=Arabidopsis thaliana OX=3702 GN=At5g18500 PE=2 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 3.0e-12
Identity = 32/41 (78.05%), Postives = 37/41 (90.24%), Query Frame = 0


Query: 1   LTYLHEGLEPKVVHRDIKSSNILLDKQWNPKVSDFGLAKLL 42
           L YLHE +EPKVVHRDIKSSNIL+D ++N K+SDFGLAKLL
Sbjct: 277 LAYLHEAIEPKVVHRDIKSSNILIDDKFNSKISDFGLAKLL 317

[Close]

BLAST of MS018873 vs. ExPASy Swiss-Prot
Match: Q9SJG2 (Probable receptor-like protein kinase At2g42960 OS=Arabidopsis thaliana OX=3702 GN=At2g42960 PE=3 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 8.7e-12
Identity = 31/41 (75.61%), Postives = 37/41 (90.24%), Query Frame = 0


Query: 1   LTYLHEGLEPKVVHRDIKSSNILLDKQWNPKVSDFGLAKLL 42
           L YLHE +EPKVVHRDIK+SNIL+D ++N K+SDFGLAKLL
Sbjct: 294 LAYLHEAIEPKVVHRDIKASNILIDDEFNAKLSDFGLAKLL 334

[Close]

BLAST of MS018873 vs. ExPASy Swiss-Prot
Match: Q9LRP3 (Probable receptor-like protein kinase At3g17420 OS=Arabidopsis thaliana OX=3702 GN=At3g17420 PE=1 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 2.5e-11
Identity = 31/41 (75.61%), Postives = 36/41 (87.80%), Query Frame = 0


Query: 1   LTYLHEGLEPKVVHRDIKSSNILLDKQWNPKVSDFGLAKLL 42
           L YLHE +EPKVVHRDIKSSNIL+D  ++ K+SDFGLAKLL
Sbjct: 265 LAYLHEAIEPKVVHRDIKSSNILMDDNFDAKLSDFGLAKLL 305

[Close]

BLAST of MS018873 vs. ExPASy TrEMBL
Match: A0A5D2GK13 (Protein kinase domain-containing protein OS=Gossypium darwinii OX=34276 GN=ES288_A05G217500v1 PE=4 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 8.7e-15
Identity = 41/41 (100.00%), Postives = 41/41 (100.00%), Query Frame = 0


Query: 1   LTYLHEGLEPKVVHRDIKSSNILLDKQWNPKVSDFGLAKLL 42
           LTYLHEGLEPKVVHRDIKSSNILLDKQWNPKVSDFGLAKLL
Sbjct: 300 LTYLHEGLEPKVVHRDIKSSNILLDKQWNPKVSDFGLAKLL 340

[Close]

BLAST of MS018873 vs. ExPASy TrEMBL
Match: A0A5J5RFB5 (Protein kinase domain-containing protein OS=Gossypium barbadense OX=3634 GN=ES319_D05G215000v1 PE=4 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 8.7e-15
Identity = 41/41 (100.00%), Postives = 41/41 (100.00%), Query Frame = 0


Query: 1   LTYLHEGLEPKVVHRDIKSSNILLDKQWNPKVSDFGLAKLL 42
           LTYLHEGLEPKVVHRDIKSSNILLDKQWNPKVSDFGLAKLL
Sbjct: 300 LTYLHEGLEPKVVHRDIKSSNILLDKQWNPKVSDFGLAKLL 340

[Close]

BLAST of MS018873 vs. ExPASy TrEMBL
Match: A0A1S3BAN7 (probable serine/threonine-protein kinase At1g01540 OS=Cucumis melo OX=3656 GN=LOC103487875 PE=4 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 8.7e-15
Identity = 41/41 (100.00%), Postives = 41/41 (100.00%), Query Frame = 0


Query: 1   LTYLHEGLEPKVVHRDIKSSNILLDKQWNPKVSDFGLAKLL 42
           LTYLHEGLEPKVVHRDIKSSNILLDKQWNPKVSDFGLAKLL
Sbjct: 292 LTYLHEGLEPKVVHRDIKSSNILLDKQWNPKVSDFGLAKLL 332

[Close]

BLAST of MS018873 vs. ExPASy TrEMBL
Match: A0A5D2ZDF8 (Protein kinase domain-containing protein OS=Gossypium mustelinum OX=34275 GN=E1A91_A05G279600v1 PE=4 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 8.7e-15
Identity = 41/41 (100.00%), Postives = 41/41 (100.00%), Query Frame = 0


Query: 1   LTYLHEGLEPKVVHRDIKSSNILLDKQWNPKVSDFGLAKLL 42
           LTYLHEGLEPKVVHRDIKSSNILLDKQWNPKVSDFGLAKLL
Sbjct: 289 LTYLHEGLEPKVVHRDIKSSNILLDKQWNPKVSDFGLAKLL 329

[Close]

BLAST of MS018873 vs. ExPASy TrEMBL
Match: A0A5D2UZF7 (Protein kinase domain-containing protein OS=Gossypium mustelinum OX=34275 GN=E1A91_D05G219700v1 PE=4 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 8.7e-15
Identity = 41/41 (100.00%), Postives = 41/41 (100.00%), Query Frame = 0


Query: 1   LTYLHEGLEPKVVHRDIKSSNILLDKQWNPKVSDFGLAKLL 42
           LTYLHEGLEPKVVHRDIKSSNILLDKQWNPKVSDFGLAKLL
Sbjct: 300 LTYLHEGLEPKVVHRDIKSSNILLDKQWNPKVSDFGLAKLL 340

[Close]

BLAST of MS018873 vs. TAIR 10
Match: AT4G02630.1 (Protein kinase superfamily protein )

HSP 1 Score: 82.8 bits (203), Expect = 7.0e-17
Identity = 39/41 (95.12%), Postives = 39/41 (95.12%), Query Frame = 0


Query: 1   LTYLHEGLEPKVVHRDIKSSNILLDKQWNPKVSDFGLAKLL 42
           L YLHEGLEPKVVHRDIKSSNILLDKQWN KVSDFGLAKLL
Sbjct: 274 LMYLHEGLEPKVVHRDIKSSNILLDKQWNSKVSDFGLAKLL 314

[Close]

BLAST of MS018873 vs. TAIR 10
Match: AT1G01540.1 (Protein kinase superfamily protein )

HSP 1 Score: 82.0 bits (201), Expect = 1.2e-16
Identity = 38/41 (92.68%), Postives = 39/41 (95.12%), Query Frame = 0


Query: 1   LTYLHEGLEPKVVHRDIKSSNILLDKQWNPKVSDFGLAKLL 42
           L YLHEGLEPKVVHRDIKSSNILLD+QWN KVSDFGLAKLL
Sbjct: 265 LAYLHEGLEPKVVHRDIKSSNILLDRQWNAKVSDFGLAKLL 305

[Close]

BLAST of MS018873 vs. TAIR 10
Match: AT1G01540.2 (Protein kinase superfamily protein )

HSP 1 Score: 82.0 bits (201), Expect = 1.2e-16
Identity = 38/41 (92.68%), Postives = 39/41 (95.12%), Query Frame = 0


Query: 1   LTYLHEGLEPKVVHRDIKSSNILLDKQWNPKVSDFGLAKLL 42
           L YLHEGLEPKVVHRDIKSSNILLD+QWN KVSDFGLAKLL
Sbjct: 265 LAYLHEGLEPKVVHRDIKSSNILLDRQWNAKVSDFGLAKLL 305

[Close]

BLAST of MS018873 vs. TAIR 10
Match: AT4G01330.1 (Protein kinase superfamily protein )

HSP 1 Score: 82.0 bits (201), Expect = 1.2e-16
Identity = 38/41 (92.68%), Postives = 39/41 (95.12%), Query Frame = 0


Query: 1   LTYLHEGLEPKVVHRDIKSSNILLDKQWNPKVSDFGLAKLL 42
           L YLHEGLEPKVVHRDIKSSNILLD+QWN KVSDFGLAKLL
Sbjct: 273 LAYLHEGLEPKVVHRDIKSSNILLDRQWNAKVSDFGLAKLL 313

[Close]

BLAST of MS018873 vs. TAIR 10
Match: AT4G01330.2 (Protein kinase superfamily protein )

HSP 1 Score: 82.0 bits (201), Expect = 1.2e-16
Identity = 38/41 (92.68%), Postives = 39/41 (95.12%), Query Frame = 0


Query: 1   LTYLHEGLEPKVVHRDIKSSNILLDKQWNPKVSDFGLAKLL 42
           L YLHEGLEPKVVHRDIKSSNILLD+QWN KVSDFGLAKLL
Sbjct: 273 LAYLHEGLEPKVVHRDIKSSNILLDRQWNAKVSDFGLAKLL 313

The following BLAST results are available for this feature:

BLAST of MS018873 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_034897591.1	1.8e-14	100.00	probable serine/threonine-protein kinase At1g01540 [Populus alba] >XP_034897599....	[more]
MBA0775289.1	1.8e-14	100.00	hypothetical protein [Gossypium trilobum]	[more]
KJB58528.1	1.8e-14	100.00	hypothetical protein B456_009G213700 [Gossypium raimondii]	[more]
KAG8494138.1	1.8e-14	100.00	hypothetical protein CXB51_011808 [Gossypium anomalum]	[more]
XP_016687761.1	1.8e-14	100.00	probable serine/threonine-protein kinase At1g01540 [Gossypium hirsutum] >KAG4147...	[more]

BLAST of MS018873 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q3EDL4	1.7e-15	92.68	Probable serine/threonine-protein kinase At1g01540 OS=Arabidopsis thaliana OX=37...	[more]
Q6NKZ9	2.9e-15	90.24	Probable receptor-like serine/threonine-protein kinase At4g34500 OS=Arabidopsis ...	[more]
Q8LEB6	3.0e-12	78.05	Probable receptor-like protein kinase At5g18500 OS=Arabidopsis thaliana OX=3702 ...	[more]
Q9SJG2	8.7e-12	75.61	Probable receptor-like protein kinase At2g42960 OS=Arabidopsis thaliana OX=3702 ...	[more]
Q9LRP3	2.5e-11	75.61	Probable receptor-like protein kinase At3g17420 OS=Arabidopsis thaliana OX=3702 ...	[more]

BLAST of MS018873 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D2GK13	8.7e-15	100.00	Protein kinase domain-containing protein OS=Gossypium darwinii OX=34276 GN=ES288...	[more]
A0A5J5RFB5	8.7e-15	100.00	Protein kinase domain-containing protein OS=Gossypium barbadense OX=3634 GN=ES31...	[more]
A0A1S3BAN7	8.7e-15	100.00	probable serine/threonine-protein kinase At1g01540 OS=Cucumis melo OX=3656 GN=LO...	[more]
A0A5D2ZDF8	8.7e-15	100.00	Protein kinase domain-containing protein OS=Gossypium mustelinum OX=34275 GN=E1A...	[more]
A0A5D2UZF7	8.7e-15	100.00	Protein kinase domain-containing protein OS=Gossypium mustelinum OX=34275 GN=E1A...	[more]

BLAST of MS018873 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G02630.1	7.0e-17	95.12	Protein kinase superfamily protein	[more]
AT1G01540.1	1.2e-16	92.68	Protein kinase superfamily protein	[more]
AT1G01540.2	1.2e-16	92.68	Protein kinase superfamily protein	[more]
AT4G01330.1	1.2e-16	92.68	Protein kinase superfamily protein	[more]
AT4G01330.2	1.2e-16	92.68	Protein kinase superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000719	Protein kinase domain	PFAM	PF00069	Pkinase	coord: 1..40 e-value: 1.3E-11 score: 44.4
IPR000719	Protein kinase domain	PROSITE	PS50011	PROTEIN_KINASE_DOM	coord: 1..41 score: 16.555874
None	No IPR available	GENE3D	1.10.510.10	Transferase(Phosphotransferase) domain 1	coord: 1..41 e-value: 2.4E-17 score: 64.7
None	No IPR available	PANTHER	PTHR47984	OS01G0323000 PROTEIN	coord: 1..41
IPR008271	Serine/threonine-protein kinase, active site	PROSITE	PS00108	PROTEIN_KINASE_ST	coord: 12..24
IPR011009	Protein kinase-like domain superfamily	SUPERFAMILY	56112	Protein kinase-like (PK-like)	coord: 1..40

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS018873.1	MS018873.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006468	protein phosphorylation
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0004672	protein kinase activity