MS018822 (gene) Bitter gourd (TR) v1

Overview


Name	MS018822
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Nucleotid_trans domain-containing protein
Location	scaffold14: 140468 .. 140821 (+)
RNA-Seq Expression	MS018822
Synteny	MS018822

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCGGATCCATTTGCAGGGGCGAAAGGAGGTAGGCTCACCTTCAAGGGAGGAGTCTTGGCCTCCCGCAGCAAGGCCATTGACAAGAAGAAGAAGAAGAAGAAGAAAGACAAAAGTAGAAGTGACGACAACCCCACGGACGAGACCGAAATTTTGTCGTTGGCTGATGCTGTAGATGGCGGCGACGGAGAAGTGTATACTATTGACGCGGCCAAGCGTATGAAGTACGAGGAGCTCTTCCCCGTGGAGACCAAGAAGTTCGGTTACGATCCCAATAACTCCAATACCAAGTTCAAGTCTGTGGAGGAAGCTCTCGATGACCGCGTCAAAAAGAAGGCGGATCGTTACTGTAAA

mRNA sequence

ATGTCGGATCCATTTGCAGGGGCGAAAGGAGGTAGGCTCACCTTCAAGGGAGGAGTCTTGGCCTCCCGCAGCAAGGCCATTGACAAGAAGAAGAAGAAGAAGAAGAAAGACAAAAGTAGAAGTGACGACAACCCCACGGACGAGACCGAAATTTTGTCGTTGGCTGATGCTGTAGATGGCGGCGACGGAGAAGTGTATACTATTGACGCGGCCAAGCGTATGAAGTACGAGGAGCTCTTCCCCGTGGAGACCAAGAAGTTCGGTTACGATCCCAATAACTCCAATACCAAGTTCAAGTCTGTGGAGGAAGCTCTCGATGACCGCGTCAAAAAGAAGGCGGATCGTTACTGTAAA

Coding sequence (CDS)

ATGTCGGATCCATTTGCAGGGGCGAAAGGAGGTAGGCTCACCTTCAAGGGAGGAGTCTTGGCCTCCCGCAGCAAGGCCATTGACAAGAAGAAGAAGAAGAAGAAGAAAGACAAAAGTAGAAGTGACGACAACCCCACGGACGAGACCGAAATTTTGTCGTTGGCTGATGCTGTAGATGGCGGCGACGGAGAAGTGTATACTATTGACGCGGCCAAGCGTATGAAGTACGAGGAGCTCTTCCCCGTGGAGACCAAGAAGTTCGGTTACGATCCCAATAACTCCAATACCAAGTTCAAGTCTGTGGAGGAAGCTCTCGATGACCGCGTCAAAAAGAAGGCGGATCGTTACTGTAAA

Protein sequence

MSDPFAGAKGGRLTFKGGVLASRSKAIDKKKKKKKKDKSRSDDNPTDETEILSLADAVDGGDGEVYTIDAAKRMKYEELFPVETKKFGYDPNNSNTKFKSVEEALDDRVKKKADRYCK

Homology

[Close]

BLAST of MS018822 vs. NCBI nr
Match: XP_022137706.1 (uncharacterized protein LOC111009076 [Momordica charantia])

HSP 1 Score: 221.5 bits (563), Expect = 3.9e-54
Identity = 117/120 (97.50%), Postives = 117/120 (97.50%), Query Frame = 0


Query: 1   MSDPFAGAKGGRLTFKGGVLASRSKAIDKKKKKKKK--DKSRSDDNPTDETEILSLADAV 60
           MSDPFAGAKGGRLTFKGGVLASRSKAIDKKKKKKKK  DKSRSDDNPTDETEILS ADAV
Sbjct: 1   MSDPFAGAKGGRLTFKGGVLASRSKAIDKKKKKKKKKRDKSRSDDNPTDETEILSSADAV 60

Query: 61  DGGDGEVYTIDAAKRMKYEELFPVETKKFGYDPNNSNTKFKSVEEALDDRVKKKADRYCK 119
           DGGDGEVYTIDAAKRMKYEELFPVETKKFGYDPNNSNTKFKSVEEALDDRVKKKADRYCK
Sbjct: 61  DGGDGEVYTIDAAKRMKYEELFPVETKKFGYDPNNSNTKFKSVEEALDDRVKKKADRYCK 120

[Close]

BLAST of MS018822 vs. NCBI nr
Match: XP_038893643.1 (uncharacterized protein LOC120082512 [Benincasa hispida])

HSP 1 Score: 206.5 bits (524), Expect = 1.3e-49
Identity = 104/118 (88.14%), Postives = 112/118 (94.92%), Query Frame = 0


Query: 1   MSDPFAGAKGGRLTFKGGVLASRSKAIDKKKKKKKKDKSRSDDNPTDETEILSLADAVDG 60
           MSDP+AG KGGRLTFKGGVLASRSK IDKKKKKKKKDKS++++NPTDE EILS AD V+G
Sbjct: 1   MSDPYAGVKGGRLTFKGGVLASRSKDIDKKKKKKKKDKSKTEENPTDEAEILSSADGVEG 60

Query: 61  GDGEVYTIDAAKRMKYEELFPVETKKFGYDPNNSNTKFKSVEEALDDRVKKKADRYCK 119
           GDG +YTIDAAKRMKYEELFPVET+KFGYDPNNSNTKFKSVEEALDDRVKKKADRYCK
Sbjct: 61  GDGAMYTIDAAKRMKYEELFPVETRKFGYDPNNSNTKFKSVEEALDDRVKKKADRYCK 118

[Close]

BLAST of MS018822 vs. NCBI nr
Match: XP_023001360.1 (uncharacterized protein LOC111495520 [Cucurbita maxima] >XP_023001361.1 uncharacterized protein LOC111495520 [Cucurbita maxima])

HSP 1 Score: 204.5 bits (519), Expect = 5.0e-49
Identity = 104/118 (88.14%), Postives = 113/118 (95.76%), Query Frame = 0


Query: 1   MSDPFAGAKGGRLTFKGGVLASRSKAIDKKKKKKKKDKSRSDDNPTDETEILSLADAVDG 60
           MSDP++GAKGGRLTFKGGVLASRSK IDKKKKKKKKDKS+SD+NPTDETEILS AD V+G
Sbjct: 1   MSDPYSGAKGGRLTFKGGVLASRSKDIDKKKKKKKKDKSKSDENPTDETEILSSADGVEG 60

Query: 61  GDGEVYTIDAAKRMKYEELFPVETKKFGYDPNNSNTKFKSVEEALDDRVKKKADRYCK 119
            +G VYTIDAAKRMKYEELFPVET+KFGYDPNN++TKFKSVEEALDDRVKKKADRYCK
Sbjct: 61  EEGVVYTIDAAKRMKYEELFPVETRKFGYDPNNADTKFKSVEEALDDRVKKKADRYCK 118

[Close]

BLAST of MS018822 vs. NCBI nr
Match: XP_004137395.2 (uncharacterized protein LOC101213981 [Cucumis sativus] >KGN63966.1 hypothetical protein Csa_013194 [Cucumis sativus])

HSP 1 Score: 201.4 bits (511), Expect = 4.2e-48
Identity = 101/118 (85.59%), Postives = 112/118 (94.92%), Query Frame = 0


Query: 1   MSDPFAGAKGGRLTFKGGVLASRSKAIDKKKKKKKKDKSRSDDNPTDETEILSLADAVDG 60
           MSDP++GAKGGRLTFKGGVLASRSK IDKKKKKKKKDKS++D+NPTD+ EIL+ AD V+ 
Sbjct: 1   MSDPYSGAKGGRLTFKGGVLASRSKDIDKKKKKKKKDKSKTDENPTDDGEILTSADGVED 60

Query: 61  GDGEVYTIDAAKRMKYEELFPVETKKFGYDPNNSNTKFKSVEEALDDRVKKKADRYCK 119
           GDG +YTIDAAKRMKYEELFPVET+KFGYDPNNSNTKFKSVE+ALDDRVKKKADRYCK
Sbjct: 61  GDGAMYTIDAAKRMKYEELFPVETRKFGYDPNNSNTKFKSVEDALDDRVKKKADRYCK 118

[Close]

BLAST of MS018822 vs. NCBI nr
Match: XP_008438568.1 (PREDICTED: uncharacterized protein LOC103483601 [Cucumis melo] >KAA0036054.1 uncharacterized protein E6C27_scaffold112G00470 [Cucumis melo var. makuwa] >TYJ98861.1 uncharacterized protein E5676_scaffold248G00570 [Cucumis melo var. makuwa])

HSP 1 Score: 201.1 bits (510), Expect = 5.5e-48
Identity = 101/118 (85.59%), Postives = 112/118 (94.92%), Query Frame = 0


Query: 1   MSDPFAGAKGGRLTFKGGVLASRSKAIDKKKKKKKKDKSRSDDNPTDETEILSLADAVDG 60
           MSDP+AGAKGGRLTFKGGVLASRSK IDKKKKKKKKDK+++D+NPTD+ EIL+ AD V+G
Sbjct: 1   MSDPYAGAKGGRLTFKGGVLASRSKDIDKKKKKKKKDKTKTDENPTDDGEILTSADGVEG 60

Query: 61  GDGEVYTIDAAKRMKYEELFPVETKKFGYDPNNSNTKFKSVEEALDDRVKKKADRYCK 119
           GDG +YTIDAAKRMKYEELFPVET+KFGYDPNNSNTK KSVE+ALDDRVKKKADRYCK
Sbjct: 61  GDGAMYTIDAAKRMKYEELFPVETRKFGYDPNNSNTKSKSVEDALDDRVKKKADRYCK 118

[Close]

BLAST of MS018822 vs. ExPASy TrEMBL
Match: A0A6J1C7F9 (uncharacterized protein LOC111009076 OS=Momordica charantia OX=3673 GN=LOC111009076 PE=4 SV=1)

HSP 1 Score: 221.5 bits (563), Expect = 1.9e-54
Identity = 117/120 (97.50%), Postives = 117/120 (97.50%), Query Frame = 0


Query: 1   MSDPFAGAKGGRLTFKGGVLASRSKAIDKKKKKKKK--DKSRSDDNPTDETEILSLADAV 60
           MSDPFAGAKGGRLTFKGGVLASRSKAIDKKKKKKKK  DKSRSDDNPTDETEILS ADAV
Sbjct: 1   MSDPFAGAKGGRLTFKGGVLASRSKAIDKKKKKKKKKRDKSRSDDNPTDETEILSSADAV 60

Query: 61  DGGDGEVYTIDAAKRMKYEELFPVETKKFGYDPNNSNTKFKSVEEALDDRVKKKADRYCK 119
           DGGDGEVYTIDAAKRMKYEELFPVETKKFGYDPNNSNTKFKSVEEALDDRVKKKADRYCK
Sbjct: 61  DGGDGEVYTIDAAKRMKYEELFPVETKKFGYDPNNSNTKFKSVEEALDDRVKKKADRYCK 120

[Close]

BLAST of MS018822 vs. ExPASy TrEMBL
Match: A0A6J1KIE4 (uncharacterized protein LOC111495520 OS=Cucurbita maxima OX=3661 GN=LOC111495520 PE=4 SV=1)

HSP 1 Score: 204.5 bits (519), Expect = 2.4e-49
Identity = 104/118 (88.14%), Postives = 113/118 (95.76%), Query Frame = 0


Query: 1   MSDPFAGAKGGRLTFKGGVLASRSKAIDKKKKKKKKDKSRSDDNPTDETEILSLADAVDG 60
           MSDP++GAKGGRLTFKGGVLASRSK IDKKKKKKKKDKS+SD+NPTDETEILS AD V+G
Sbjct: 1   MSDPYSGAKGGRLTFKGGVLASRSKDIDKKKKKKKKDKSKSDENPTDETEILSSADGVEG 60

Query: 61  GDGEVYTIDAAKRMKYEELFPVETKKFGYDPNNSNTKFKSVEEALDDRVKKKADRYCK 119
            +G VYTIDAAKRMKYEELFPVET+KFGYDPNN++TKFKSVEEALDDRVKKKADRYCK
Sbjct: 61  EEGVVYTIDAAKRMKYEELFPVETRKFGYDPNNADTKFKSVEEALDDRVKKKADRYCK 118

[Close]

BLAST of MS018822 vs. ExPASy TrEMBL
Match: A0A0A0LVD6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G031870 PE=4 SV=1)

HSP 1 Score: 201.4 bits (511), Expect = 2.0e-48
Identity = 101/118 (85.59%), Postives = 112/118 (94.92%), Query Frame = 0


Query: 1   MSDPFAGAKGGRLTFKGGVLASRSKAIDKKKKKKKKDKSRSDDNPTDETEILSLADAVDG 60
           MSDP++GAKGGRLTFKGGVLASRSK IDKKKKKKKKDKS++D+NPTD+ EIL+ AD V+ 
Sbjct: 1   MSDPYSGAKGGRLTFKGGVLASRSKDIDKKKKKKKKDKSKTDENPTDDGEILTSADGVED 60

Query: 61  GDGEVYTIDAAKRMKYEELFPVETKKFGYDPNNSNTKFKSVEEALDDRVKKKADRYCK 119
           GDG +YTIDAAKRMKYEELFPVET+KFGYDPNNSNTKFKSVE+ALDDRVKKKADRYCK
Sbjct: 61  GDGAMYTIDAAKRMKYEELFPVETRKFGYDPNNSNTKFKSVEDALDDRVKKKADRYCK 118

[Close]

BLAST of MS018822 vs. ExPASy TrEMBL
Match: A0A5A7SXI8 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold248G00570 PE=4 SV=1)

HSP 1 Score: 201.1 bits (510), Expect = 2.7e-48
Identity = 101/118 (85.59%), Postives = 112/118 (94.92%), Query Frame = 0


Query: 1   MSDPFAGAKGGRLTFKGGVLASRSKAIDKKKKKKKKDKSRSDDNPTDETEILSLADAVDG 60
           MSDP+AGAKGGRLTFKGGVLASRSK IDKKKKKKKKDK+++D+NPTD+ EIL+ AD V+G
Sbjct: 1   MSDPYAGAKGGRLTFKGGVLASRSKDIDKKKKKKKKDKTKTDENPTDDGEILTSADGVEG 60

Query: 61  GDGEVYTIDAAKRMKYEELFPVETKKFGYDPNNSNTKFKSVEEALDDRVKKKADRYCK 119
           GDG +YTIDAAKRMKYEELFPVET+KFGYDPNNSNTK KSVE+ALDDRVKKKADRYCK
Sbjct: 61  GDGAMYTIDAAKRMKYEELFPVETRKFGYDPNNSNTKSKSVEDALDDRVKKKADRYCK 118

[Close]

BLAST of MS018822 vs. ExPASy TrEMBL
Match: A0A1S3AWC8 (uncharacterized protein LOC103483601 OS=Cucumis melo OX=3656 GN=LOC103483601 PE=4 SV=1)

HSP 1 Score: 201.1 bits (510), Expect = 2.7e-48
Identity = 101/118 (85.59%), Postives = 112/118 (94.92%), Query Frame = 0


Query: 1   MSDPFAGAKGGRLTFKGGVLASRSKAIDKKKKKKKKDKSRSDDNPTDETEILSLADAVDG 60
           MSDP+AGAKGGRLTFKGGVLASRSK IDKKKKKKKKDK+++D+NPTD+ EIL+ AD V+G
Sbjct: 1   MSDPYAGAKGGRLTFKGGVLASRSKDIDKKKKKKKKDKTKTDENPTDDGEILTSADGVEG 60

Query: 61  GDGEVYTIDAAKRMKYEELFPVETKKFGYDPNNSNTKFKSVEEALDDRVKKKADRYCK 119
           GDG +YTIDAAKRMKYEELFPVET+KFGYDPNNSNTK KSVE+ALDDRVKKKADRYCK
Sbjct: 61  GDGAMYTIDAAKRMKYEELFPVETRKFGYDPNNSNTKSKSVEDALDDRVKKKADRYCK 118

[Close]

BLAST of MS018822 vs. TAIR 10
Match: AT2G25720.1 (unknown protein; Has 38 Blast hits to 38 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 38; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 111.3 bits (277), Expect = 5.3e-25
Identity = 67/121 (55.37%), Postives = 81/121 (66.94%), Query Frame = 0


Query: 1   MSDPFAGAKGGRLTFKGGVLASRSKAIDKKKKKKKKDKSRSDDNPTDETEIL---SLADA 60
           MSDP+    GGRL FKGG LA+R K+I+KKKKKK+K      D   D  +     S   A
Sbjct: 1   MSDPYERVNGGRLAFKGGDLATR-KSIEKKKKKKQKKNKEKLDGVEDGAKTAPDGSPPPA 60

Query: 61  VDGGDGEVYTIDAAKRMKYEELFPVETKKFGYDPNNSNTKFKSVEEALDDRVKKKADRYC 119
              GD ++Y+IDAAK+ KY++LFPVE KKFGY P      F+S E+ALDDRVKKKADRYC
Sbjct: 61  AAAGDEDIYSIDAAKKKKYDDLFPVEAKKFGYIP---KANFESREDALDDRVKKKADRYC 117

The following BLAST results are available for this feature:

BLAST of MS018822 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022137706.1	3.9e-54	97.50	uncharacterized protein LOC111009076 [Momordica charantia]	[more]
XP_038893643.1	1.3e-49	88.14	uncharacterized protein LOC120082512 [Benincasa hispida]	[more]
XP_023001360.1	5.0e-49	88.14	uncharacterized protein LOC111495520 [Cucurbita maxima] >XP_023001361.1 uncharac...	[more]
XP_004137395.2	4.2e-48	85.59	uncharacterized protein LOC101213981 [Cucumis sativus] >KGN63966.1 hypothetical ...	[more]
XP_008438568.1	5.5e-48	85.59	PREDICTED: uncharacterized protein LOC103483601 [Cucumis melo] >KAA0036054.1 unc...	[more]

BLAST of MS018822 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MS018822 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1C7F9	1.9e-54	97.50	uncharacterized protein LOC111009076 OS=Momordica charantia OX=3673 GN=LOC111009...	[more]
A0A6J1KIE4	2.4e-49	88.14	uncharacterized protein LOC111495520 OS=Cucurbita maxima OX=3661 GN=LOC111495520...	[more]
A0A0A0LVD6	2.0e-48	85.59	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G031870 PE=4 SV=1	[more]
A0A5A7SXI8	2.7e-48	85.59	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S3AWC8	2.7e-48	85.59	uncharacterized protein LOC103483601 OS=Cucumis melo OX=3656 GN=LOC103483601 PE=...	[more]

BLAST of MS018822 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G25720.1	5.3e-25	55.37	unknown protein; Has 38 Blast hits to 38 proteins in 18 species: Archae - 0; Bac...	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 24..54
None	No IPR available	PANTHER	PTHR13282:SF7	OS04G0566000 PROTEIN	coord: 1..118
IPR013865	Protein FAM32A	PANTHER	PTHR13282	UNCHARACTERIZED	coord: 1..118

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS018822.1	MS018822.1	mRNA