MS018746 (gene) Bitter gourd (TR) v1

Overview
NameMS018746
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionUnknown protein
Locationscaffold313: 1667086 .. 1667406 (-)
RNA-Seq ExpressionMS018746
SyntenyMS018746
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
CATGCAGCTGCACATCAGAAAAGGAAGGAAATGATGAAATCACACCAAATTGCACTAAAACTCCCAACAATAATCTTGAACTCCATTCTGTTTCTGTCTCTGAACTCTCTCACAATTCTTGTGGTGTTTGCAGAAAGTGGAGTGGGGATCGGTACTGCCTATGATGCCTTGCTCATCTCCATTGCCTTTGCTTTCTGTGCTGCTTTGAGTGCACTTTTGGTCCCTCAAAGGCACACTTTGGCCACTTTCTGTGCCTTCTACTCTCTGGCTTCCATGGCTTCTGCTCTGCTTCTGCTCATTTGGGCACTCTATCACACACTC

mRNA sequence

CATGCAGCTGCACATCAGAAAAGGAAGGAAATGATGAAATCACACCAAATTGCACTAAAACTCCCAACAATAATCTTGAACTCCATTCTGTTTCTGTCTCTGAACTCTCTCACAATTCTTGTGGTGTTTGCAGAAAGTGGAGTGGGGATCGGTACTGCCTATGATGCCTTGCTCATCTCCATTGCCTTTGCTTTCTGTGCTGCTTTGAGTGCACTTTTGGTCCCTCAAAGGCACACTTTGGCCACTTTCTGTGCCTTCTACTCTCTGGCTTCCATGGCTTCTGCTCTGCTTCTGCTCATTTGGGCACTCTATCACACACTC

Coding sequence (CDS)

CATGCAGCTGCACATCAGAAAAGGAAGGAAATGATGAAATCACACCAAATTGCACTAAAACTCCCAACAATAATCTTGAACTCCATTCTGTTTCTGTCTCTGAACTCTCTCACAATTCTTGTGGTGTTTGCAGAAAGTGGAGTGGGGATCGGTACTGCCTATGATGCCTTGCTCATCTCCATTGCCTTTGCTTTCTGTGCTGCTTTGAGTGCACTTTTGGTCCCTCAAAGGCACACTTTGGCCACTTTCTGTGCCTTCTACTCTCTGGCTTCCATGGCTTCTGCTCTGCTTCTGCTCATTTGGGCACTCTATCACACACTC

Protein sequence

HAAAHQKRKEMMKSHQIALKLPTIILNSILFLSLNSLTILVVFAESGVGIGTAYDALLISIAFAFCAALSALLVPQRHTLATFCAFYSLASMASALLLLIWALYHTL
Homology
BLAST of MS018746 vs. NCBI nr
Match: KGN49809.1 (hypothetical protein Csa_004648 [Cucumis sativus])

HSP 1 Score: 115.9 bits (289), Expect = 2.1e-22
Identity = 78/117 (66.67%), Postives = 87/117 (74.36%), Query Frame = 0

Query: 6   QKRKEMMK-SHQIAL-------KLPTIILNSILFLSLNSLTILVVFAESGVGI------- 65
           +KRKE+MK S+QIA+        LPTIIL SILFLSLNSLTIL++FA S VG        
Sbjct: 6   EKRKEIMKLSNQIAMAKLPTSFTLPTIILKSILFLSLNSLTILLLFAGSAVGTVIFHGFP 65

Query: 66  GTAYDALLISIAFAFCAALSALLVPQRHTLATFCAFYSLASMASALLLLIWALYHTL 108
            +A DA +ISI FAF  ALSALLVPQRH LA FCA YSLAS+ASALLLLIW LYHTL
Sbjct: 66  SSAIDAFIISIVFAFSGALSALLVPQRHKLARFCALYSLASLASALLLLIWGLYHTL 122

BLAST of MS018746 vs. NCBI nr
Match: KAG6579131.1 (hypothetical protein SDJN03_23579, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 102.4 bits (254), Expect = 2.4e-18
Identity = 64/92 (69.57%), Postives = 69/92 (75.00%), Query Frame = 0

Query: 22  PTIILNSILFLSLNSLTILVVFAESGVG-------IGTAYDALLISIAFAFCAALSALLV 81
           PT+IL SILFLS NSLTILV+FA S  G         +  DA +ISI FAF  ALSALLV
Sbjct: 18  PTVILQSILFLSWNSLTILVLFAGSAAGNVIFHDLPSSTIDAFVISIFFAFSGALSALLV 77

Query: 82  PQRHTLATFCAFYSLASMASALLLLIWALYHT 107
           PQRH LATFCA YSLASMASALLLLIW LYH+
Sbjct: 78  PQRHNLATFCALYSLASMASALLLLIWGLYHS 109

BLAST of MS018746 vs. NCBI nr
Match: KAG6601931.1 (hypothetical protein SDJN03_07164, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 84.0 bits (206), Expect = 8.8e-13
Identity = 58/111 (52.25%), Postives = 75/111 (67.57%), Query Frame = 0

Query: 9   KEMMKSHQIALKLP-TIILNSILFLSLNSLTILVVFA--ESGVGIG----------TAYD 68
           KEMMKS Q A   P TI+L  IL+LSLN+L+IL++ +    G G+G          +A+D
Sbjct: 2   KEMMKSDQNAFVPPLTILLKPILYLSLNTLSILLILSGRSEGGGVGLIFDGLSNPSSAFD 61

Query: 69  ALLISIAFAFCAALSALLVPQRHTLATFCAFYSLASMASALLLLIWALYHT 107
           A ++SI FAF  AL ALL+P +  LATF   YS+ASMASALLLLIW LY++
Sbjct: 62  AFVLSITFAFLGALGALLIPHKPNLATFYTLYSVASMASALLLLIWGLYYS 112

BLAST of MS018746 vs. NCBI nr
Match: KAA0050243.1 (hypothetical protein E6C27_scaffold355G00870 [Cucumis melo var. makuwa] >TYJ98163.1 hypothetical protein E5676_scaffold180G00460 [Cucumis melo var. makuwa])

HSP 1 Score: 79.3 bits (194), Expect = 2.2e-11
Identity = 48/72 (66.67%), Postives = 51/72 (70.83%), Query Frame = 0

Query: 45  ESGVGIGT---------AYDALLISIAFAFCAALSALLVPQRHTLATFCAFYSLASMASA 104
           E+G  +GT         A DA +ISI FAF  ALSALLVPQRH LA FCA YSL SMASA
Sbjct: 2   ENGSAVGTVMFHGLSSSAIDAFVISIVFAFSGALSALLVPQRHNLAKFCAVYSLVSMASA 61

Query: 105 LLLLIWALYHTL 108
           LLLLIW LYHTL
Sbjct: 62  LLLLIWGLYHTL 73

BLAST of MS018746 vs. NCBI nr
Match: KGN49807.1 (hypothetical protein Csa_004664 [Cucumis sativus])

HSP 1 Score: 63.9 bits (154), Expect = 9.5e-07
Identity = 48/108 (44.44%), Postives = 66/108 (61.11%), Query Frame = 0

Query: 10  EMMKSHQIALKLPTIILNSILFLSLNSLTILVVFAESGVGIGT------------AYDAL 69
           E MKS+QI+    T +LNSILF+S N+LTIL+  +     + +            A+DA 
Sbjct: 6   EKMKSNQIS---STTLLNSILFVSFNTLTILMFLSARSKDLRSLVIFNALSYPSFAFDAF 65

Query: 70  LISIAFAFCAALSALLVPQRHTLATFCAFYSLASMASALLLLIWALYH 106
           ++SI F+F  AL ALL+P +  LA + AFYS+A MA AL LLI  LY+
Sbjct: 66  VLSITFSFSTALGALLIPNKPILAIYYAFYSVAFMAFALFLLILGLYY 110

BLAST of MS018746 vs. ExPASy TrEMBL
Match: A0A0A0KLQ9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G137420 PE=4 SV=1)

HSP 1 Score: 115.9 bits (289), Expect = 1.0e-22
Identity = 78/117 (66.67%), Postives = 87/117 (74.36%), Query Frame = 0

Query: 6   QKRKEMMK-SHQIAL-------KLPTIILNSILFLSLNSLTILVVFAESGVGI------- 65
           +KRKE+MK S+QIA+        LPTIIL SILFLSLNSLTIL++FA S VG        
Sbjct: 6   EKRKEIMKLSNQIAMAKLPTSFTLPTIILKSILFLSLNSLTILLLFAGSAVGTVIFHGFP 65

Query: 66  GTAYDALLISIAFAFCAALSALLVPQRHTLATFCAFYSLASMASALLLLIWALYHTL 108
            +A DA +ISI FAF  ALSALLVPQRH LA FCA YSLAS+ASALLLLIW LYHTL
Sbjct: 66  SSAIDAFIISIVFAFSGALSALLVPQRHKLARFCALYSLASLASALLLLIWGLYHTL 122

BLAST of MS018746 vs. ExPASy TrEMBL
Match: A0A5A7U2V8 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold180G00460 PE=4 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 1.1e-11
Identity = 48/72 (66.67%), Postives = 51/72 (70.83%), Query Frame = 0

Query: 45  ESGVGIGT---------AYDALLISIAFAFCAALSALLVPQRHTLATFCAFYSLASMASA 104
           E+G  +GT         A DA +ISI FAF  ALSALLVPQRH LA FCA YSL SMASA
Sbjct: 2   ENGSAVGTVMFHGLSSSAIDAFVISIVFAFSGALSALLVPQRHNLAKFCAVYSLVSMASA 61

Query: 105 LLLLIWALYHTL 108
           LLLLIW LYHTL
Sbjct: 62  LLLLIWGLYHTL 73

BLAST of MS018746 vs. ExPASy TrEMBL
Match: A0A0A0KN11 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G137400 PE=4 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 4.6e-07
Identity = 48/108 (44.44%), Postives = 66/108 (61.11%), Query Frame = 0

Query: 10  EMMKSHQIALKLPTIILNSILFLSLNSLTILVVFAESGVGIGT------------AYDAL 69
           E MKS+QI+    T +LNSILF+S N+LTIL+  +     + +            A+DA 
Sbjct: 6   EKMKSNQIS---STTLLNSILFVSFNTLTILMFLSARSKDLRSLVIFNALSYPSFAFDAF 65

Query: 70  LISIAFAFCAALSALLVPQRHTLATFCAFYSLASMASALLLLIWALYH 106
           ++SI F+F  AL ALL+P +  LA + AFYS+A MA AL LLI  LY+
Sbjct: 66  VLSITFSFSTALGALLIPNKPILAIYYAFYSVAFMAFALFLLILGLYY 110

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KGN49809.12.1e-2266.67hypothetical protein Csa_004648 [Cucumis sativus][more]
KAG6579131.12.4e-1869.57hypothetical protein SDJN03_23579, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6601931.18.8e-1352.25hypothetical protein SDJN03_07164, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAA0050243.12.2e-1166.67hypothetical protein E6C27_scaffold355G00870 [Cucumis melo var. makuwa] >TYJ9816... [more]
KGN49807.19.5e-0744.44hypothetical protein Csa_004664 [Cucumis sativus][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0KLQ91.0e-2266.67Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G137420 PE=4 SV=1[more]
A0A5A7U2V81.1e-1166.67Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A0A0KN114.6e-0744.44Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G137400 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS018746.1MS018746.1mRNA