MS018684 (gene) Bitter gourd (TR) v1

Overview
NameMS018684
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Descriptionhigh mobility group B protein 7
Locationscaffold313: 1035080 .. 1036692 (+)
RNA-Seq ExpressionMS018684
SyntenyMS018684
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCCGGCGGAGGATCTTCGAAGTCGAGGAAGAGAGTGGAGGCTACTCCGGCGGACGCCGCCGCCGCCACTGGCCCTTCACTCGTTCGAGCCAAAGACGGCAGTGCTTTCGCTCGATGGTGCGTTGTTTTCTTCATTTTTCTTGATGTATGTTGTGGTTGAATGATTTTGCCTTGCTGAGAACTAAAGAAGCGTAGGCACATTGTGGAACGTCTATTTAGGCTGTGTGTTCTTACTGATTTGACGTCTATTTAGGTTTTGTGTTGGTCTTTTAATTTGTTCGTTTTTTGCGTTGATAAGTTTGGCTTTCATTTCCGCCTTGTAGTCTTGATTTAGAGTTGAATGAAATGATCGATTTCATGTTATCGGAGGAATTGCAGTACCGACAATCTTGAGTTTCTTGATCACGAAAGAATTTGATTTATCTTGTTTTATGGCTTATTTTTTGGCTGTTGCAGTGATGAGTGCGGCAAGAGTGTTCCCGTAGCCCTAATTAGCATGCACAGCTGCAGCTTGGACGCCAAAATAAGAATGAATTTGGGTACATTATCTGTTTGGATTCCCGAATGCTTAGTTTGATGCGGTTCTTTTCTGATTTGGAACTCATACATTTCTGTTTTTTCGGCAGAGTCTCAGACTGTCGAGAAGCAAACTCAAGCTAAAAAGTCATCCGAAAGGTACTTTGTTCGTCGCTTTGCACCTATCAGCGCACATTTCCTCCTATTTAAATCCGATTGTTGCGATGAAATGAATTGTATTAAGCTGAATGATAATATGTACAGGAAAAGATCAGCATCATCTGAACCCAAGGCTAAAAAATCCAAAGTTGAGAAGAGGGGGAAGAAAGACAGAGATCCAAATGCCCCCAAACGCCCCCCAACAGCCTTCTTTATCTTCATGTATGTTAATTCCTCGCCCACTTTATGCTCCCAATAGTCAGATTGTTCAGATTTCTACAGTGTGATCATTTACTCGGGCCTTAACTGAATTTTATTATTGTAATTCTTCAGGGATGACTTCAGAAAATCATATAAAGAAGATCATCCTGATTCCAAAGGTGGTAAGGAGGTGAGCACATATCTATACTCATTTCAAAGTTTCCTGTGAGAAAACTGTATTGGTAGCCATTAGTGTTGGCTCAATCCCTGATTGAATTGAATACTCCCACTGATTTTTTAGGTTGCAAAGGAAGGTGGTGAGAAATGGAAGTCATTGACTGATGAAGTGAGTTAAATTACTTGGCATTTGGAAAGATGTTTATGTTTAGCCAATTGTATTACTTAAACCTTGAAATGTTTGAACAGGAGAAGAAGCCTTACCAAGATAAAGCAGCTGAGTTGAAATCAGAGTATGAAAAAGCCTTGGAAAATCTCAAGAATGAGAATGAAGACGTAAGAACTGTTGAAACTTTTAATTAAGGCTTCATATCATTTCATAACTATTTTGTTTTTGTAACTATAATGTGTTAATTGTTTGTTTTGTAATATAGTTTTTATAAACGTTTATCAAACGGGATCTAACTGTTGAAATGCTAATGTGGGATTTTTGTTTAGGATGAAAAGGAGGCAGAAGAGGCTGCAGAGAAGGAAGTGGAAGAAATTTCAGATGAAGAG

mRNA sequence

ATGGCCGGCGGAGGATCTTCGAAGTCGAGGAAGAGAGTGGAGGCTACTCCGGCGGACGCCGCCGCCGCCACTGGCCCTTCACTCGTTCGAGCCAAAGACGGCAGTGCTTTCGCTCGATGTGATGAGTGCGGCAAGAGTGTTCCCGTAGCCCTAATTAGCATGCACAGCTGCAGCTTGGACGCCAAAATAAGAATGAATTTGGAGTCTCAGACTGTCGAGAAGCAAACTCAAGCTAAAAAGTCATCCGAAAGGAAAAGATCAGCATCATCTGAACCCAAGGCTAAAAAATCCAAAGTTGAGAAGAGGGGGAAGAAAGACAGAGATCCAAATGCCCCCAAACGCCCCCCAACAGCCTTCTTTATCTTCATGGATGACTTCAGAAAATCATATAAAGAAGATCATCCTGATTCCAAAGGTGGTAAGGAGGTTGCAAAGGAAGGTGGTGAGAAATGGAAGTCATTGACTGATGAAGAGAAGAAGCCTTACCAAGATAAAGCAGCTGAGTTGAAATCAGAGTATGAAAAAGCCTTGGAAAATCTCAAGAATGAGAATGAAGACGATGAAAAGGAGGCAGAAGAGGCTGCAGAGAAGGAAGTGGAAGAAATTTCAGATGAAGAG

Coding sequence (CDS)

ATGGCCGGCGGAGGATCTTCGAAGTCGAGGAAGAGAGTGGAGGCTACTCCGGCGGACGCCGCCGCCGCCACTGGCCCTTCACTCGTTCGAGCCAAAGACGGCAGTGCTTTCGCTCGATGTGATGAGTGCGGCAAGAGTGTTCCCGTAGCCCTAATTAGCATGCACAGCTGCAGCTTGGACGCCAAAATAAGAATGAATTTGGAGTCTCAGACTGTCGAGAAGCAAACTCAAGCTAAAAAGTCATCCGAAAGGAAAAGATCAGCATCATCTGAACCCAAGGCTAAAAAATCCAAAGTTGAGAAGAGGGGGAAGAAAGACAGAGATCCAAATGCCCCCAAACGCCCCCCAACAGCCTTCTTTATCTTCATGGATGACTTCAGAAAATCATATAAAGAAGATCATCCTGATTCCAAAGGTGGTAAGGAGGTTGCAAAGGAAGGTGGTGAGAAATGGAAGTCATTGACTGATGAAGAGAAGAAGCCTTACCAAGATAAAGCAGCTGAGTTGAAATCAGAGTATGAAAAAGCCTTGGAAAATCTCAAGAATGAGAATGAAGACGATGAAAAGGAGGCAGAAGAGGCTGCAGAGAAGGAAGTGGAAGAAATTTCAGATGAAGAG

Protein sequence

MAGGGSSKSRKRVEATPADAAAATGPSLVRAKDGSAFARCDECGKSVPVALISMHSCSLDAKIRMNLESQTVEKQTQAKKSSERKRSASSEPKAKKSKVEKRGKKDRDPNAPKRPPTAFFIFMDDFRKSYKEDHPDSKGGKEVAKEGGEKWKSLTDEEKKPYQDKAAELKSEYEKALENLKNENEDDEKEAEEAAEKEVEEISDEE
Homology
BLAST of MS018684 vs. NCBI nr
Match: XP_022141388.1 (high mobility group B protein 7 [Momordica charantia])

HSP 1 Score: 365.5 bits (937), Expect = 2.9e-97
Identity = 205/206 (99.51%), Postives = 205/206 (99.51%), Query Frame = 0

Query: 1   MAGGGSSKSRKRVEATPADAAAATGPSLVRAKDGSAFARCDECGKSVPVALISMHSCSLD 60
           MAGGGSSKSRKRVEATPADAA ATGPSLVRAKDGSAFARCDECGKSVPVALISMHSCSLD
Sbjct: 19  MAGGGSSKSRKRVEATPADAAVATGPSLVRAKDGSAFARCDECGKSVPVALISMHSCSLD 78

Query: 61  AKIRMNLESQTVEKQTQAKKSSERKRSASSEPKAKKSKVEKRGKKDRDPNAPKRPPTAFF 120
           AKIRMNLESQTVEKQTQAKKSSERKRSASSEPKAKKSKVEKRGKKDRDPNAPKRPPTAFF
Sbjct: 79  AKIRMNLESQTVEKQTQAKKSSERKRSASSEPKAKKSKVEKRGKKDRDPNAPKRPPTAFF 138

Query: 121 IFMDDFRKSYKEDHPDSKGGKEVAKEGGEKWKSLTDEEKKPYQDKAAELKSEYEKALENL 180
           IFMDDFRKSYKEDHPDSKGGKEVAKEGGEKWKSLTDEEKKPYQDKAAELKSEYEKALENL
Sbjct: 139 IFMDDFRKSYKEDHPDSKGGKEVAKEGGEKWKSLTDEEKKPYQDKAAELKSEYEKALENL 198

Query: 181 KNENEDDEKEAEEAAEKEVEEISDEE 207
           KNENEDDEKEAEEAAEKEVEEISDEE
Sbjct: 199 KNENEDDEKEAEEAAEKEVEEISDEE 224

BLAST of MS018684 vs. NCBI nr
Match: XP_022938415.1 (high mobility group B protein 7-like [Cucurbita moschata])

HSP 1 Score: 318.5 bits (815), Expect = 4.1e-83
Identity = 181/207 (87.44%), Postives = 194/207 (93.72%), Query Frame = 0

Query: 1   MAGGGSSKSRKRVEATPADAAAATGPSLVRAKDGSAFARCDECGKSVPVALISMHSCSLD 60
           MAGGGSSKSRKRVEATPA AAA+TGPSLVRAKDGSAFARCDECGKSVP ALISMHSCSLD
Sbjct: 1   MAGGGSSKSRKRVEATPA-AAASTGPSLVRAKDGSAFARCDECGKSVPAALISMHSCSLD 60

Query: 61  AKIRMNLESQTVEKQTQAKKSSERKRSASSEPKAKKSKVEKRGKKDRDPNAPKRPPTAFF 120
           AKIR NLE+QTVEKQTQAKK +E+KRSA SEPKAKKS+ EKRGKKD+DPNAPKRPPTAFF
Sbjct: 61  AKIRTNLEAQTVEKQTQAKKPAEKKRSAPSEPKAKKSRTEKRGKKDKDPNAPKRPPTAFF 120

Query: 121 IFMDDFRKSYKEDHPDSKGGKEVAKEGGEKWKSLTDEEKKPYQDKAAELKSEYEKALENL 180
           +FMDDFRKSYKE HPDSKG KEVAKEGGEKWKS+TDEEKKPYQDKAAELK+EYEKALE  
Sbjct: 121 VFMDDFRKSYKEAHPDSKGVKEVAKEGGEKWKSMTDEEKKPYQDKAAELKAEYEKALEES 180

Query: 181 KN-ENEDDEKEAEEAAEKEVEEISDEE 207
           +N ENE+DEKE EE AEKEVEE++DEE
Sbjct: 181 RNAENEEDEKETEEVAEKEVEEVTDEE 206

BLAST of MS018684 vs. NCBI nr
Match: XP_023550365.1 (high mobility group B protein 7-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 318.2 bits (814), Expect = 5.4e-83
Identity = 181/207 (87.44%), Postives = 193/207 (93.24%), Query Frame = 0

Query: 1   MAGGGSSKSRKRVEATPADAAAATGPSLVRAKDGSAFARCDECGKSVPVALISMHSCSLD 60
           MAGGGSSKSRKRVEATPA AAA TGPSLVRAKDGSAFARCDECGKSVP ALISMHSCSLD
Sbjct: 1   MAGGGSSKSRKRVEATPA-AAATTGPSLVRAKDGSAFARCDECGKSVPAALISMHSCSLD 60

Query: 61  AKIRMNLESQTVEKQTQAKKSSERKRSASSEPKAKKSKVEKRGKKDRDPNAPKRPPTAFF 120
           AKIR NLE+QTVEKQTQAKK +E+KRSA SEPKAKKS+ EKRGKKD+DPNAPKRPPTAFF
Sbjct: 61  AKIRTNLEAQTVEKQTQAKKPAEKKRSAPSEPKAKKSRTEKRGKKDKDPNAPKRPPTAFF 120

Query: 121 IFMDDFRKSYKEDHPDSKGGKEVAKEGGEKWKSLTDEEKKPYQDKAAELKSEYEKALENL 180
           +FMDDFRKSYKE HPDSKG KEVAKEGGEKWKS+TDEEKKPYQDKAAELK+EYEKALE  
Sbjct: 121 VFMDDFRKSYKEAHPDSKGVKEVAKEGGEKWKSMTDEEKKPYQDKAAELKAEYEKALEES 180

Query: 181 KN-ENEDDEKEAEEAAEKEVEEISDEE 207
           +N ENE+DEKE EE AEKEVEE++DEE
Sbjct: 181 RNAENEEDEKETEEVAEKEVEEVTDEE 206

BLAST of MS018684 vs. NCBI nr
Match: XP_022992985.1 (high mobility group B protein 7-like [Cucurbita maxima])

HSP 1 Score: 316.6 bits (810), Expect = 1.6e-82
Identity = 180/207 (86.96%), Postives = 193/207 (93.24%), Query Frame = 0

Query: 1   MAGGGSSKSRKRVEATPADAAAATGPSLVRAKDGSAFARCDECGKSVPVALISMHSCSLD 60
           MAGGGSSKSRKRVEATPA AAA TGPSLVRAKDGSAFARCDECGKSVP ALISMHSCSLD
Sbjct: 1   MAGGGSSKSRKRVEATPA-AAAPTGPSLVRAKDGSAFARCDECGKSVPAALISMHSCSLD 60

Query: 61  AKIRMNLESQTVEKQTQAKKSSERKRSASSEPKAKKSKVEKRGKKDRDPNAPKRPPTAFF 120
           AKIR NLE+QTV+KQTQAKK +E+KRSA SEPKAKKS+ EKRGKKD+DPNAPKRPPTAFF
Sbjct: 61  AKIRTNLEAQTVDKQTQAKKPAEKKRSAPSEPKAKKSRTEKRGKKDKDPNAPKRPPTAFF 120

Query: 121 IFMDDFRKSYKEDHPDSKGGKEVAKEGGEKWKSLTDEEKKPYQDKAAELKSEYEKALENL 180
           +FMDDFRKSYKE HPDSKG KEVAKEGGEKWKS+TDEEKKPYQDKAAELK+EYEKALE  
Sbjct: 121 VFMDDFRKSYKEAHPDSKGVKEVAKEGGEKWKSMTDEEKKPYQDKAAELKAEYEKALEES 180

Query: 181 KN-ENEDDEKEAEEAAEKEVEEISDEE 207
           +N ENE+DEKE EE AEKEVEE++DEE
Sbjct: 181 RNAENEEDEKETEEVAEKEVEEVTDEE 206

BLAST of MS018684 vs. NCBI nr
Match: KAG6579089.1 (High mobility group B protein 7, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 315.8 bits (808), Expect = 2.7e-82
Identity = 180/207 (86.96%), Postives = 192/207 (92.75%), Query Frame = 0

Query: 1   MAGGGSSKSRKRVEATPADAAAATGPSLVRAKDGSAFARCDECGKSVPVALISMHSCSLD 60
           MAGGGSSKSRKRVEATPA AAA TGPSLVRAKDGSAFARCDECGKSVP ALISMHSCSLD
Sbjct: 1   MAGGGSSKSRKRVEATPA-AAATTGPSLVRAKDGSAFARCDECGKSVPAALISMHSCSLD 60

Query: 61  AKIRMNLESQTVEKQTQAKKSSERKRSASSEPKAKKSKVEKRGKKDRDPNAPKRPPTAFF 120
           AKIR NLE+QTVEKQTQAKK +E+KRSA SEPKAKK + EKRGKKD+DPNAPKRPPTAFF
Sbjct: 61  AKIRTNLEAQTVEKQTQAKKPAEKKRSAPSEPKAKKFRTEKRGKKDKDPNAPKRPPTAFF 120

Query: 121 IFMDDFRKSYKEDHPDSKGGKEVAKEGGEKWKSLTDEEKKPYQDKAAELKSEYEKALENL 180
           +FMDDFRKSYKE HPDSKG KEVAKEGGEKWKS+TDEEKKPYQDKAAELK+EYEKALE  
Sbjct: 121 VFMDDFRKSYKEAHPDSKGVKEVAKEGGEKWKSMTDEEKKPYQDKAAELKAEYEKALEES 180

Query: 181 KN-ENEDDEKEAEEAAEKEVEEISDEE 207
           +N ENE+DEKE EE AEKEVEE++DEE
Sbjct: 181 RNAENEEDEKETEEVAEKEVEEVTDEE 206

BLAST of MS018684 vs. ExPASy Swiss-Prot
Match: Q8LDF9 (High mobility group B protein 7 OS=Arabidopsis thaliana OX=3702 GN=HMGB7 PE=1 SV=1)

HSP 1 Score: 165.2 bits (417), Expect = 7.6e-40
Identity = 111/203 (54.68%), Postives = 144/203 (70.94%), Query Frame = 0

Query: 8   KSRKRVEATPADAAAATGPSLVRAKDGSAFARCDECGKSVPVALISMHSCSLDAKIRMNL 67
           K RKRVE   A+ ++ T  +L RAKDGSAFA C+ C KSV VALISMH+CSLDAKIR+NL
Sbjct: 12  KQRKRVE---AETSSNTSTTLRRAKDGSAFALCEGCNKSVAVALISMHNCSLDAKIRVNL 71

Query: 68  ESQTVEKQTQAKKS-SERKRSASSEPKAKK-SKVEKRGKKDRDPNAPKRPPTAFFIFMDD 127
           E+Q VE Q +AKK  +E+K++ S  PK K+  K     K     N PKRP TAFFIFM D
Sbjct: 72  EAQVVETQAEAKKKPAEKKKTTSDGPKPKRLKKTNDEKKSSSTSNKPKRPLTAFFIFMSD 131

Query: 128 FRKSYKEDHPDSKGGKEVAKEGGEKWKSLTDEEKKPYQDKAAELKSEYEKALE--NLKNE 187
           FRK++K +H  S   K+ AK GGEKWKSLT+EEKK Y DKAAELK+EY K+LE  +   E
Sbjct: 132 FRKTFKSEHNGSL-AKDAAKIGGEKWKSLTEEEKKVYLDKAAELKAEYNKSLESNDADEE 191

Query: 188 NEDDEKEAEEAAEKEVEEISDEE 207
            ED+EK++++  + E +++ D++
Sbjct: 192 EEDEEKQSDDVDDAEEKQVDDDD 210

BLAST of MS018684 vs. ExPASy Swiss-Prot
Match: P40620 (HMG1/2-like protein OS=Vicia faba OX=3906 PE=2 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 5.9e-16
Identity = 61/141 (43.26%), Postives = 93/141 (65.96%), Query Frame = 0

Query: 68  ESQTVEKQTQAKKSSERKRSASSEPKAKKSKVEKRGKKDRDPNAPKRPPTAFFIFMDDFR 127
           +S+   K+ + K +  +K +A++    K  K   +GK+ +DPN PKRPP+AFF+FM DFR
Sbjct: 5   KSKGESKKAETKLAVNKKGAAAT----KGGKKPAKGKEPKDPNKPKRPPSAFFVFMADFR 64

Query: 128 KSYKEDHPDSKGGKEVAKEGGEKWKSLTDEEKKPYQDKAAELKSEYEKALE--NLKNENE 187
           + YK+DHP++K    V K  GE+WKSL++EEK PY D+A + K EYE  L+  N K E +
Sbjct: 65  EQYKKDHPNNKSVAAVGKACGEEWKSLSEEEKAPYVDRALKKKEEYEITLQAYNKKLEGK 124

Query: 188 DDEKEAEEAAEKEVEEISDEE 207
           DDE+ ++++  +  +E  DEE
Sbjct: 125 DDEEGSDKSKSEVNDEDEDEE 141

BLAST of MS018684 vs. ExPASy Swiss-Prot
Match: P93047 (High mobility group B protein 3 OS=Arabidopsis thaliana OX=3702 GN=HMGB3 PE=1 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 1.1e-14
Identity = 61/127 (48.03%), Postives = 79/127 (62.20%), Query Frame = 0

Query: 80  KSSERKRSASSEPKAKKSKVEKRGKKDRDPNAPKRPPTAFFIFMDDFRKSYKEDHPDSKG 139
           KS    RS       K +K  K   K  DPN PKRP +AFF+FM+DFR +YKE+HP +K 
Sbjct: 5   KSKAETRSTKLSVTKKPAKGAKGAAK--DPNKPKRPSSAFFVFMEDFRVTYKEEHPKNKS 64

Query: 140 GKEVAKEGGEKWKSLTDEEKKPYQDKAAELKSEYEKALENLKNENEDDEKEAEEAAEKEV 199
              V K GGEKWKSL+D EK PY  KA + K EYEK ++    + E+  KE EE ++K V
Sbjct: 65  VAAVGKAGGEKWKSLSDSEKAPYVAKADKRKVEYEKNMKAYNKKLEEGPKEDEE-SDKSV 124

Query: 200 EEISDEE 207
            E++DE+
Sbjct: 125 SEVNDED 128

BLAST of MS018684 vs. ExPASy Swiss-Prot
Match: O49596 (High mobility group B protein 2 OS=Arabidopsis thaliana OX=3702 GN=HMGB2 PE=1 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 3.6e-13
Identity = 57/128 (44.53%), Postives = 82/128 (64.06%), Query Frame = 0

Query: 80  KSSERKRSASSEPKAKKSKVEKRGK-KDRDPNAPKRPPTAFFIFMDDFRKSYKEDHPDSK 139
           KS    RS+      K +K   RGK   +DPN PKRP +AFF+FM+DFR+++K+++P +K
Sbjct: 5   KSKTETRSSKLSVTKKPAKGAGRGKAAAKDPNKPKRPASAFFVFMEDFRETFKKENPKNK 64

Query: 140 GGKEVAKEGGEKWKSLTDEEKKPYQDKAAELKSEYEKALENLKNENEDDEKEAEEAAEKE 199
               V K  G+KWKSL+D EK PY  KA + K EYEK ++    + E+  KE EE ++K 
Sbjct: 65  SVATVGKAAGDKWKSLSDSEKAPYVAKAEKRKVEYEKNIKAYNKKLEEGPKEDEE-SDKS 124

Query: 200 VEEISDEE 207
           V E++DE+
Sbjct: 125 VSEVNDED 131

BLAST of MS018684 vs. ExPASy Swiss-Prot
Match: O49595 (High mobility group B protein 1 OS=Arabidopsis thaliana OX=3702 GN=HMGB1 PE=1 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 6.1e-13
Identity = 56/135 (41.48%), Postives = 86/135 (63.70%), Query Frame = 0

Query: 74  KQTQAKKSSERKRSASSEPKAKKSKVEKRGKKDRDPNAPKRPPTAFFIFMDDFRKSYKED 133
           K    +K  +RK  A  +P  ++++ EK+ KK  DPN PKR P+AFF+F++DFR ++K++
Sbjct: 18  KPVDDRKVGKRKAPA-EKPTKRETRKEKKAKK--DPNKPKRAPSAFFVFLEDFRVTFKKE 77

Query: 134 HPDSKGGKEVAKEGGEKWKSLTDEEKKPYQDKAAELKSEYEKALE--NLKNENEDDEKEA 193
           +P+ K    V K GG+KWKS++  EK PY++KAA+ K+EYEK ++  N   E   DE E 
Sbjct: 78  NPNVKAVSAVGKAGGQKWKSMSQAEKAPYEEKAAKRKAEYEKQMDAYNKNLEEGSDESEK 137

Query: 194 EEAAEKEVEEISDEE 207
             +   + +E S EE
Sbjct: 138 SRSEINDEDEASGEE 149

BLAST of MS018684 vs. ExPASy TrEMBL
Match: A0A6J1CKD5 (high mobility group B protein 7 OS=Momordica charantia OX=3673 GN=LOC111011800 PE=4 SV=1)

HSP 1 Score: 365.5 bits (937), Expect = 1.4e-97
Identity = 205/206 (99.51%), Postives = 205/206 (99.51%), Query Frame = 0

Query: 1   MAGGGSSKSRKRVEATPADAAAATGPSLVRAKDGSAFARCDECGKSVPVALISMHSCSLD 60
           MAGGGSSKSRKRVEATPADAA ATGPSLVRAKDGSAFARCDECGKSVPVALISMHSCSLD
Sbjct: 19  MAGGGSSKSRKRVEATPADAAVATGPSLVRAKDGSAFARCDECGKSVPVALISMHSCSLD 78

Query: 61  AKIRMNLESQTVEKQTQAKKSSERKRSASSEPKAKKSKVEKRGKKDRDPNAPKRPPTAFF 120
           AKIRMNLESQTVEKQTQAKKSSERKRSASSEPKAKKSKVEKRGKKDRDPNAPKRPPTAFF
Sbjct: 79  AKIRMNLESQTVEKQTQAKKSSERKRSASSEPKAKKSKVEKRGKKDRDPNAPKRPPTAFF 138

Query: 121 IFMDDFRKSYKEDHPDSKGGKEVAKEGGEKWKSLTDEEKKPYQDKAAELKSEYEKALENL 180
           IFMDDFRKSYKEDHPDSKGGKEVAKEGGEKWKSLTDEEKKPYQDKAAELKSEYEKALENL
Sbjct: 139 IFMDDFRKSYKEDHPDSKGGKEVAKEGGEKWKSLTDEEKKPYQDKAAELKSEYEKALENL 198

Query: 181 KNENEDDEKEAEEAAEKEVEEISDEE 207
           KNENEDDEKEAEEAAEKEVEEISDEE
Sbjct: 199 KNENEDDEKEAEEAAEKEVEEISDEE 224

BLAST of MS018684 vs. ExPASy TrEMBL
Match: A0A6J1FJR0 (high mobility group B protein 7-like OS=Cucurbita moschata OX=3662 GN=LOC111444667 PE=4 SV=1)

HSP 1 Score: 318.5 bits (815), Expect = 2.0e-83
Identity = 181/207 (87.44%), Postives = 194/207 (93.72%), Query Frame = 0

Query: 1   MAGGGSSKSRKRVEATPADAAAATGPSLVRAKDGSAFARCDECGKSVPVALISMHSCSLD 60
           MAGGGSSKSRKRVEATPA AAA+TGPSLVRAKDGSAFARCDECGKSVP ALISMHSCSLD
Sbjct: 1   MAGGGSSKSRKRVEATPA-AAASTGPSLVRAKDGSAFARCDECGKSVPAALISMHSCSLD 60

Query: 61  AKIRMNLESQTVEKQTQAKKSSERKRSASSEPKAKKSKVEKRGKKDRDPNAPKRPPTAFF 120
           AKIR NLE+QTVEKQTQAKK +E+KRSA SEPKAKKS+ EKRGKKD+DPNAPKRPPTAFF
Sbjct: 61  AKIRTNLEAQTVEKQTQAKKPAEKKRSAPSEPKAKKSRTEKRGKKDKDPNAPKRPPTAFF 120

Query: 121 IFMDDFRKSYKEDHPDSKGGKEVAKEGGEKWKSLTDEEKKPYQDKAAELKSEYEKALENL 180
           +FMDDFRKSYKE HPDSKG KEVAKEGGEKWKS+TDEEKKPYQDKAAELK+EYEKALE  
Sbjct: 121 VFMDDFRKSYKEAHPDSKGVKEVAKEGGEKWKSMTDEEKKPYQDKAAELKAEYEKALEES 180

Query: 181 KN-ENEDDEKEAEEAAEKEVEEISDEE 207
           +N ENE+DEKE EE AEKEVEE++DEE
Sbjct: 181 RNAENEEDEKETEEVAEKEVEEVTDEE 206

BLAST of MS018684 vs. ExPASy TrEMBL
Match: A0A6J1JX92 (high mobility group B protein 7-like OS=Cucurbita maxima OX=3661 GN=LOC111489146 PE=4 SV=1)

HSP 1 Score: 316.6 bits (810), Expect = 7.6e-83
Identity = 180/207 (86.96%), Postives = 193/207 (93.24%), Query Frame = 0

Query: 1   MAGGGSSKSRKRVEATPADAAAATGPSLVRAKDGSAFARCDECGKSVPVALISMHSCSLD 60
           MAGGGSSKSRKRVEATPA AAA TGPSLVRAKDGSAFARCDECGKSVP ALISMHSCSLD
Sbjct: 1   MAGGGSSKSRKRVEATPA-AAAPTGPSLVRAKDGSAFARCDECGKSVPAALISMHSCSLD 60

Query: 61  AKIRMNLESQTVEKQTQAKKSSERKRSASSEPKAKKSKVEKRGKKDRDPNAPKRPPTAFF 120
           AKIR NLE+QTV+KQTQAKK +E+KRSA SEPKAKKS+ EKRGKKD+DPNAPKRPPTAFF
Sbjct: 61  AKIRTNLEAQTVDKQTQAKKPAEKKRSAPSEPKAKKSRTEKRGKKDKDPNAPKRPPTAFF 120

Query: 121 IFMDDFRKSYKEDHPDSKGGKEVAKEGGEKWKSLTDEEKKPYQDKAAELKSEYEKALENL 180
           +FMDDFRKSYKE HPDSKG KEVAKEGGEKWKS+TDEEKKPYQDKAAELK+EYEKALE  
Sbjct: 121 VFMDDFRKSYKEAHPDSKGVKEVAKEGGEKWKSMTDEEKKPYQDKAAELKAEYEKALEES 180

Query: 181 KN-ENEDDEKEAEEAAEKEVEEISDEE 207
           +N ENE+DEKE EE AEKEVEE++DEE
Sbjct: 181 RNAENEEDEKETEEVAEKEVEEVTDEE 206

BLAST of MS018684 vs. ExPASy TrEMBL
Match: A0A6J1JNZ6 (high mobility group B protein 7-like OS=Cucurbita maxima OX=3661 GN=LOC111487589 PE=4 SV=1)

HSP 1 Score: 289.3 bits (739), Expect = 1.3e-74
Identity = 165/205 (80.49%), Postives = 182/205 (88.78%), Query Frame = 0

Query: 1   MAGGGSSKSRKRVEATPADAAAATGPSLVRAKDGSAFARCDECGKSVPVALISMHSCSLD 60
           MA   SS SRKRV+A P+D AA TGPSLVRAKDGSAFARCDECGKSVP ALISMHSCSLD
Sbjct: 43  MAVRRSSSSRKRVDAAPSD-AATTGPSLVRAKDGSAFARCDECGKSVPAALISMHSCSLD 102

Query: 61  AKIRMNLESQTVEKQTQAKKSSERKRSASSEPKAKKSKVEKRGKKDRDPNAPKRPPTAFF 120
            KIRMNLE+QTVEKQTQAKK +ERKRSA SEPKA KSK +KR KK++DPNAPKRPPTAFF
Sbjct: 103 TKIRMNLEAQTVEKQTQAKKPAERKRSAPSEPKATKSKTDKRKKKNKDPNAPKRPPTAFF 162

Query: 121 IFMDDFRKSYKEDHPDSKGGKEVAKEGGEKWKSLTDEEKKPYQDKAAELKSEYEKALENL 180
           IFMDD+RKS+KE +PDSKG KEVAKEGGEKWKS+TDEEKKPYQDKAAELK+EY+KALE  
Sbjct: 163 IFMDDYRKSFKEANPDSKGVKEVAKEGGEKWKSMTDEEKKPYQDKAAELKAEYKKALETQ 222

Query: 181 KNENEDDEKEAEEAAEKEVEEISDE 206
             ENEDDEK+ EE AE+E EE++DE
Sbjct: 223 NAENEDDEKDTEEVAEREAEEVTDE 246

BLAST of MS018684 vs. ExPASy TrEMBL
Match: A0A6J1GYR9 (high mobility group B protein 7-like OS=Cucurbita moschata OX=3662 GN=LOC111458705 PE=4 SV=1)

HSP 1 Score: 288.5 bits (737), Expect = 2.2e-74
Identity = 165/205 (80.49%), Postives = 180/205 (87.80%), Query Frame = 0

Query: 1   MAGGGSSKSRKRVEATPADAAAATGPSLVRAKDGSAFARCDECGKSVPVALISMHSCSLD 60
           MA   SS SRKRV+A P+D AA TGPSLVRAKDGSAFARC ECGKSVP ALISMHSCSLD
Sbjct: 1   MAVRRSSSSRKRVDAAPSD-AATTGPSLVRAKDGSAFARCGECGKSVPAALISMHSCSLD 60

Query: 61  AKIRMNLESQTVEKQTQAKKSSERKRSASSEPKAKKSKVEKRGKKDRDPNAPKRPPTAFF 120
            KIRMNLE+QTVEKQTQAKK +ERKRSA SEPKA KSK +KR KKD+DPNAPKRPPTAFF
Sbjct: 61  TKIRMNLEAQTVEKQTQAKKPAERKRSAPSEPKATKSKTDKRKKKDKDPNAPKRPPTAFF 120

Query: 121 IFMDDFRKSYKEDHPDSKGGKEVAKEGGEKWKSLTDEEKKPYQDKAAELKSEYEKALENL 180
           IFM+DFRKS+KE +PDSKG KEVAKEGGEKWKS+TDEEKKPYQDKAAELK+EYEKALE  
Sbjct: 121 IFMEDFRKSFKEANPDSKGVKEVAKEGGEKWKSMTDEEKKPYQDKAAELKAEYEKALETR 180

Query: 181 KNENEDDEKEAEEAAEKEVEEISDE 206
             ENEDDEK+ EE  EKE E+++DE
Sbjct: 181 NTENEDDEKDTEEVTEKEAEKVTDE 204

BLAST of MS018684 vs. TAIR 10
Match: AT5G23420.1 (high-mobility group box 6 )

HSP 1 Score: 165.2 bits (417), Expect = 5.4e-41
Identity = 111/203 (54.68%), Postives = 144/203 (70.94%), Query Frame = 0

Query: 8   KSRKRVEATPADAAAATGPSLVRAKDGSAFARCDECGKSVPVALISMHSCSLDAKIRMNL 67
           K RKRVE   A+ ++ T  +L RAKDGSAFA C+ C KSV VALISMH+CSLDAKIR+NL
Sbjct: 12  KQRKRVE---AETSSNTSTTLRRAKDGSAFALCEGCNKSVAVALISMHNCSLDAKIRVNL 71

Query: 68  ESQTVEKQTQAKKS-SERKRSASSEPKAKK-SKVEKRGKKDRDPNAPKRPPTAFFIFMDD 127
           E+Q VE Q +AKK  +E+K++ S  PK K+  K     K     N PKRP TAFFIFM D
Sbjct: 72  EAQVVETQAEAKKKPAEKKKTTSDGPKPKRLKKTNDEKKSSSTSNKPKRPLTAFFIFMSD 131

Query: 128 FRKSYKEDHPDSKGGKEVAKEGGEKWKSLTDEEKKPYQDKAAELKSEYEKALE--NLKNE 187
           FRK++K +H  S   K+ AK GGEKWKSLT+EEKK Y DKAAELK+EY K+LE  +   E
Sbjct: 132 FRKTFKSEHNGSL-AKDAAKIGGEKWKSLTEEEKKVYLDKAAELKAEYNKSLESNDADEE 191

Query: 188 NEDDEKEAEEAAEKEVEEISDEE 207
            ED+EK++++  + E +++ D++
Sbjct: 192 EEDEEKQSDDVDDAEEKQVDDDD 210

BLAST of MS018684 vs. TAIR 10
Match: AT1G20696.1 (high mobility group B3 )

HSP 1 Score: 81.6 bits (200), Expect = 7.9e-16
Identity = 61/127 (48.03%), Postives = 79/127 (62.20%), Query Frame = 0

Query: 80  KSSERKRSASSEPKAKKSKVEKRGKKDRDPNAPKRPPTAFFIFMDDFRKSYKEDHPDSKG 139
           KS    RS       K +K  K   K  DPN PKRP +AFF+FM+DFR +YKE+HP +K 
Sbjct: 5   KSKAETRSTKLSVTKKPAKGAKGAAK--DPNKPKRPSSAFFVFMEDFRVTYKEEHPKNKS 64

Query: 140 GKEVAKEGGEKWKSLTDEEKKPYQDKAAELKSEYEKALENLKNENEDDEKEAEEAAEKEV 199
              V K GGEKWKSL+D EK PY  KA + K EYEK ++    + E+  KE EE ++K V
Sbjct: 65  VAAVGKAGGEKWKSLSDSEKAPYVAKADKRKVEYEKNMKAYNKKLEEGPKEDEE-SDKSV 124

Query: 200 EEISDEE 207
            E++DE+
Sbjct: 125 SEVNDED 128

BLAST of MS018684 vs. TAIR 10
Match: AT1G20696.3 (high mobility group B3 )

HSP 1 Score: 81.6 bits (200), Expect = 7.9e-16
Identity = 61/127 (48.03%), Postives = 79/127 (62.20%), Query Frame = 0

Query: 80  KSSERKRSASSEPKAKKSKVEKRGKKDRDPNAPKRPPTAFFIFMDDFRKSYKEDHPDSKG 139
           KS    RS       K +K  K   K  DPN PKRP +AFF+FM+DFR +YKE+HP +K 
Sbjct: 5   KSKAETRSTKLSVTKKPAKGAKGAAK--DPNKPKRPSSAFFVFMEDFRVTYKEEHPKNKS 64

Query: 140 GKEVAKEGGEKWKSLTDEEKKPYQDKAAELKSEYEKALENLKNENEDDEKEAEEAAEKEV 199
              V K GGEKWKSL+D EK PY  KA + K EYEK ++    + E+  KE EE ++K V
Sbjct: 65  VAAVGKAGGEKWKSLSDSEKAPYVAKADKRKVEYEKNMKAYNKKLEEGPKEDEE-SDKSV 124

Query: 200 EEISDEE 207
            E++DE+
Sbjct: 125 SEVNDED 128

BLAST of MS018684 vs. TAIR 10
Match: AT3G51880.2 (high mobility group B1 )

HSP 1 Score: 77.8 bits (190), Expect = 1.1e-14
Identity = 55/133 (41.35%), Postives = 86/133 (64.66%), Query Frame = 0

Query: 74  KQTQAKKSSERKRSASSEPKAKKSKVEKRGKKDRDPNAPKRPPTAFFIFMDDFRKSYKED 133
           K    +K  +RK  A  +P  ++++ EK+ KK  DPN PKR P+AFF+F++DFR ++K++
Sbjct: 18  KPVDDRKVGKRKAPA-EKPTKRETRKEKKAKK--DPNKPKRAPSAFFVFLEDFRVTFKKE 77

Query: 134 HPDSKGGKEVAKEGGEKWKSLTDEEKKPYQDKAAELKSEYEKALENLKNENEDDEKEAEE 193
           +P+ K    V K GG+KWKS++  EK PY++KAA+ K+EYEK ++      E    E  +
Sbjct: 78  NPNVKAVSAVGKAGGQKWKSMSQAEKAPYEEKAAKRKAEYEKQMDAYNKNLE----EGSD 137

Query: 194 AAEKEVEEISDEE 207
            +EK   EI+DE+
Sbjct: 138 ESEKSRSEINDED 143

BLAST of MS018684 vs. TAIR 10
Match: AT1G20693.1 (high mobility group B2 )

HSP 1 Score: 76.6 bits (187), Expect = 2.5e-14
Identity = 57/128 (44.53%), Postives = 82/128 (64.06%), Query Frame = 0

Query: 80  KSSERKRSASSEPKAKKSKVEKRGK-KDRDPNAPKRPPTAFFIFMDDFRKSYKEDHPDSK 139
           KS    RS+      K +K   RGK   +DPN PKRP +AFF+FM+DFR+++K+++P +K
Sbjct: 5   KSKTETRSSKLSVTKKPAKGAGRGKAAAKDPNKPKRPASAFFVFMEDFRETFKKENPKNK 64

Query: 140 GGKEVAKEGGEKWKSLTDEEKKPYQDKAAELKSEYEKALENLKNENEDDEKEAEEAAEKE 199
               V K  G+KWKSL+D EK PY  KA + K EYEK ++    + E+  KE EE ++K 
Sbjct: 65  SVATVGKAAGDKWKSLSDSEKAPYVAKAEKRKVEYEKNIKAYNKKLEEGPKEDEE-SDKS 124

Query: 200 VEEISDEE 207
           V E++DE+
Sbjct: 125 VSEVNDED 131

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022141388.12.9e-9799.51high mobility group B protein 7 [Momordica charantia][more]
XP_022938415.14.1e-8387.44high mobility group B protein 7-like [Cucurbita moschata][more]
XP_023550365.15.4e-8387.44high mobility group B protein 7-like [Cucurbita pepo subsp. pepo][more]
XP_022992985.11.6e-8286.96high mobility group B protein 7-like [Cucurbita maxima][more]
KAG6579089.12.7e-8286.96High mobility group B protein 7, partial [Cucurbita argyrosperma subsp. sororia][more]
Match NameE-valueIdentityDescription
Q8LDF97.6e-4054.68High mobility group B protein 7 OS=Arabidopsis thaliana OX=3702 GN=HMGB7 PE=1 SV... [more]
P406205.9e-1643.26HMG1/2-like protein OS=Vicia faba OX=3906 PE=2 SV=1[more]
P930471.1e-1448.03High mobility group B protein 3 OS=Arabidopsis thaliana OX=3702 GN=HMGB3 PE=1 SV... [more]
O495963.6e-1344.53High mobility group B protein 2 OS=Arabidopsis thaliana OX=3702 GN=HMGB2 PE=1 SV... [more]
O495956.1e-1341.48High mobility group B protein 1 OS=Arabidopsis thaliana OX=3702 GN=HMGB1 PE=1 SV... [more]
Match NameE-valueIdentityDescription
A0A6J1CKD51.4e-9799.51high mobility group B protein 7 OS=Momordica charantia OX=3673 GN=LOC111011800 P... [more]
A0A6J1FJR02.0e-8387.44high mobility group B protein 7-like OS=Cucurbita moschata OX=3662 GN=LOC1114446... [more]
A0A6J1JX927.6e-8386.96high mobility group B protein 7-like OS=Cucurbita maxima OX=3661 GN=LOC111489146... [more]
A0A6J1JNZ61.3e-7480.49high mobility group B protein 7-like OS=Cucurbita maxima OX=3661 GN=LOC111487589... [more]
A0A6J1GYR92.2e-7480.49high mobility group B protein 7-like OS=Cucurbita moschata OX=3662 GN=LOC1114587... [more]
Match NameE-valueIdentityDescription
AT5G23420.15.4e-4154.68high-mobility group box 6 [more]
AT1G20696.17.9e-1648.03high mobility group B3 [more]
AT1G20696.37.9e-1648.03high mobility group B3 [more]
AT3G51880.21.1e-1441.35high mobility group B1 [more]
AT1G20693.12.5e-1444.53high mobility group B2 [more]
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 159..205
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 77..112
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 185..206
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..28
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 125..184
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 69..206
NoneNo IPR availablePANTHERPTHR47658:SF1HIGH MOBILITY GROUP B PROTEIN 12-RELATEDcoord: 6..201
NoneNo IPR availablePANTHERPTHR47658HIGH MOBILITY GROUP B PROTEIN 12-RELATEDcoord: 6..201
NoneNo IPR availableCDDcd01390HMGB-UBF_HMG-boxcoord: 112..178
e-value: 1.44275E-20
score: 79.5941
IPR009071High mobility group box domainSMARTSM00398hmgende2coord: 111..182
e-value: 7.9E-26
score: 101.8
IPR009071High mobility group box domainPFAMPF00505HMG_boxcoord: 112..180
e-value: 5.3E-22
score: 78.0
IPR009071High mobility group box domainPROSITEPS50118HMG_BOX_2coord: 112..181
score: 19.973064
IPR036910High mobility group box domain superfamilyGENE3D1.10.30.10High mobility group box domaincoord: 94..196
e-value: 8.0E-26
score: 92.3
IPR036910High mobility group box domain superfamilySUPERFAMILY47095HMG-boxcoord: 103..183

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS018684.1MS018684.1mRNA