MS018582 (gene) Bitter gourd (TR) v1

Overview


Name	MS018582
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	transmembrane protein 50A
Location	scaffold313: 70501 .. 72706 (-)
RNA-Seq Expression	MS018582
Synteny	MS018582

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATTTGGCGGAACTGTGGTCAATCTTCGGCCCAGGCGTCGCCGGTGCCGTGTTCGGCGCCGGATGGTGGTTCTGGGTTGACGCCGTCGTCTGCAGTTCTGTTCCGGTCTCCTTCGTCCACTACCTCCCAGGTTCTTTATTCTTACACATTTACTACTCCAAGCTCCGTGTAATTCGCGCTTAGGGTTTTTGACGGCGTGCCTCCGGTATTGGCGTTGCAGGTATTTTTGCCTCTTTCGCGGCTCTCATGTTCAATTGCGTTCGGAAAGAAGATATCGATTATTCTCCGTACGAGGAAGGCGAATGGAGGCGAGTATTTTATGAATGTGTTGTCTGCTTTCCTATTTTTCTCTATTGTTCAATTCCGTCACCGATCATATAGCGGCCCTCGTGCTTTATCATTCGATTTGATTGAATGCAATTTCATAGCGTCCTTCTTCGACAAGTTAATGTGCAATGTGGTTTAGTTTCTTGCTAGCATTATTCTCCTTGGATGTGTTAGGATCTTATGAACTCATACATTCGGGTATTAATTTACATTTTTAGATTATCGAATGCACTTTGAGCCCAAATTTGCTTGCATGCAATAGAAGTTACAGGGGCATGGTCGAAACACTCATCACGAAGCTTGGAATCGAGCAACGAATGAATTGTTCGTTAGCTGTCCGTTATTAGCGCATAAAGGAGGAGAAAAGTCAAATAGGCAACAAAAGTTGAACACTGTCAATGTCTGTGTTTAAAGTAAGAGTAATTTGCATATGTGATATGATATCTGCACCGAGACTTTTACGCCTTTTTTTTCATGGGAGCAGCATTTCTACTGTGATGATTATTATCAGAACGTCCTGTTAGCCAATTCTGTAAATCCCTTTTTAATATCCTTTCCGATTAAGTGGGTTGTCAAGAGGAGAAACTACTAAGGGGGAAGAGTGAGGTTGTGTAGGGTGTAATGCACATGTCTAGTGGTATATATATAGAGAGAGAGAGTTGAAAGAAAAATGTGTATGTGTGAACTGCATAGACCAGCAGAAATGAAGAGATCGATCATAATTTCTTGATTGAATGGTCCAAGTGATAGTAAACGCTGGTGGAGGTCTGACAGTGACAAACATAAGAAAAAGGTGTATTTGAGGTTATAATGTTCTAGAGCTAAGAAATGTTTTTGGGTTGCTATGTCAGGATTAAGATGCATTGAAAACCATTCCTTACACCTTCAGTAGTTGCAATACTTGTTTGGGAATAAAATCACTAGCGACTTGCTAGTGGAAACCTAGCTTCTACGAGCTTCATTAGAACCCACAAAAAAAAGGAGTTCTTAAGGTGGTTATTGTGGAATTAAAATCTGTATGGAAGACCTATTGATCAACGGTAACATTAATTATACAACTATTTAGGATTTAATATCCAATGAATTCTTTTTGCAACCTAATGTATGGTAGGGTTGGACAGTTGTCTCACGAGCTGGATCAAACGCACACGGATTAAAAGAATTGTGCACATATTTACTGATCAATGGAGAAAATAACAATTAGAGCAAGGTAACGACATAAAATTGCGGCTTGCTCCATATGTTTTAACCGCTGTGATTTAGGGACGATAATCACTAGGAGTCTCAAGAGTCAACTTTACTGATTGAGGGGGGTACAAAGGATAATGAAACGTGAAGGGAATTAGGATTTTTTTTTTCATTATATGTTAATGGCAACATAAATCATGGACGTCTACTGTGCTCACAGCCCAGTAGTAAAGATTCTGCATATCTGCTTGTTGAGGACAAAATCTGTTGTTCATTTTTCTTAAAGAGAAATTTTATATGCCTTCCACATTCCTACTAGAATACAATATCGGTTCATGTCAGGACATGATGAATTGATATGTTGGCTATGAATTGATACGTCGGGACATCATGGAAATCAACCTTTGTTTATCAAGTTTTAAACCTATAAGCAAAGGAAAATTAATGAATCCTGTGATAACATTGAGAATTTGATGTGTTGATGTAGTGCAAGTATATTGTTGTAATTAACAGTGCTGATATTTCCATTAACAACAGATTGAAGCTTTGGCTCTTCTTCGCTTATGTGGTATCATTCGTTTCATTAGCAGCATCAGTGGGACTCTTGATACAAGATTCAATAGTAAAAACTGGGCCATCAGTGTGGACGGGAGTTGCGGGAGTATTACAGTGTGTGTTTGTGTTGGTT

mRNA sequence

ATGGATTTGGCGGAACTGTGGTCAATCTTCGGCCCAGGCGTCGCCGGTGCCGTGTTCGGCGCCGGATGGTGGTTCTGGGTTGACGCCGTCGTCTGCAGTTCTGTTCCGGTCTCCTTCGTCCACTACCTCCCAGGTATTTTTGCCTCTTTCGCGGCTCTCATGTTCAATTGCGTTCGGAAAGAAGATATCGATTATTCTCCGTACGAGGAAGGCGAATGGAGGCGACTTTGGCTCTTCTTCGCTTATGTGGTATCATTCGTTTCATTAGCAGCATCAGTGGGACTCTTGATACAAGATTCAATAGTAAAAACTGGGCCATCAGTGTGGACGGGAGTTGCGGGAGTATTACAGTGTGTGTTTGTGTTGGTT

Coding sequence (CDS)

ATGGATTTGGCGGAACTGTGGTCAATCTTCGGCCCAGGCGTCGCCGGTGCCGTGTTCGGCGCCGGATGGTGGTTCTGGGTTGACGCCGTCGTCTGCAGTTCTGTTCCGGTCTCCTTCGTCCACTACCTCCCAGGTATTTTTGCCTCTTTCGCGGCTCTCATGTTCAATTGCGTTCGGAAAGAAGATATCGATTATTCTCCGTACGAGGAAGGCGAATGGAGGCGACTTTGGCTCTTCTTCGCTTATGTGGTATCATTCGTTTCATTAGCAGCATCAGTGGGACTCTTGATACAAGATTCAATAGTAAAAACTGGGCCATCAGTGTGGACGGGAGTTGCGGGAGTATTACAGTGTGTGTTTGTGTTGGTT

Protein sequence

MDLAELWSIFGPGVAGAVFGAGWWFWVDAVVCSSVPVSFVHYLPGIFASFAALMFNCVRKEDIDYSPYEEGEWRRLWLFFAYVVSFVSLAASVGLLIQDSIVKTGPSVWTGVAGVLQCVFVLV

Homology

[Close]

BLAST of MS018582 vs. NCBI nr
Match: XP_022141734.1 (transmembrane protein 50A [Momordica charantia])

HSP 1 Score: 249.6 bits (636), Expect = 1.4e-62
Identity = 122/124 (98.39%), Postives = 123/124 (99.19%), Query Frame = 0


Query: 1   MDLAELWSIFGPGVAGAVFGAGWWFWVDAVVCSSVPVSFVHYLPGIFASFAALMFNCVRK 60
           MDLAELWSIFGPGVAGAVFGAGWWFWVDAVVCSSVPVSFVHYLPGIFASFAALMFNCVRK
Sbjct: 1   MDLAELWSIFGPGVAGAVFGAGWWFWVDAVVCSSVPVSFVHYLPGIFASFAALMFNCVRK 60

Query: 61  EDIDYSPYEEGEWR-RLWLFFAYVVSFVSLAASVGLLIQDSIVKTGPSVWTGVAGVLQCV 120
           EDIDYSPYEEGEWR +LWLFFAYVVSFVSLAASVGLLIQDSIVKTGPSVWTGVAGVLQCV
Sbjct: 61  EDIDYSPYEEGEWRLKLWLFFAYVVSFVSLAASVGLLIQDSIVKTGPSVWTGVAGVLQCV 120

Query: 121 FVLV 124
           FVLV
Sbjct: 121 FVLV 124

[Close]

BLAST of MS018582 vs. NCBI nr
Match: XP_008460472.1 (PREDICTED: transmembrane protein 50A [Cucumis melo])

HSP 1 Score: 246.1 bits (627), Expect = 1.5e-61
Identity = 120/124 (96.77%), Postives = 122/124 (98.39%), Query Frame = 0


Query: 1   MDLAELWSIFGPGVAGAVFGAGWWFWVDAVVCSSVPVSFVHYLPGIFASFAALMFNCVRK 60
           MDLAELWSIFGPGVAGAVFGAGWWFWVDAVVCSSV VSFVHYLPGIFASFAALMFNCVRK
Sbjct: 1   MDLAELWSIFGPGVAGAVFGAGWWFWVDAVVCSSVAVSFVHYLPGIFASFAALMFNCVRK 60

Query: 61  EDIDYSPYEEGEWR-RLWLFFAYVVSFVSLAASVGLLIQDSIVKTGPSVWTGVAGVLQCV 120
           EDIDYSPYEEGEWR +LWLFFAYVVSFVSLAASVGLLIQDS+VKTGPSVWTGVAGVLQCV
Sbjct: 61  EDIDYSPYEEGEWRLKLWLFFAYVVSFVSLAASVGLLIQDSVVKTGPSVWTGVAGVLQCV 120

Query: 121 FVLV 124
           FVLV
Sbjct: 121 FVLV 124

[Close]

BLAST of MS018582 vs. NCBI nr
Match: XP_038874577.1 (transmembrane protein 50A [Benincasa hispida])

HSP 1 Score: 245.7 bits (626), Expect = 2.0e-61
Identity = 119/124 (95.97%), Postives = 122/124 (98.39%), Query Frame = 0


Query: 1   MDLAELWSIFGPGVAGAVFGAGWWFWVDAVVCSSVPVSFVHYLPGIFASFAALMFNCVRK 60
           MDLAELWSIFGPGVAGAVFGAGWWFWVDAVVCSSV VSF+HYLPGIFASFAALMFNCVRK
Sbjct: 1   MDLAELWSIFGPGVAGAVFGAGWWFWVDAVVCSSVAVSFIHYLPGIFASFAALMFNCVRK 60

Query: 61  EDIDYSPYEEGEWR-RLWLFFAYVVSFVSLAASVGLLIQDSIVKTGPSVWTGVAGVLQCV 120
           EDIDYSPYEEGEWR +LWLFFAYVVSFVSLAASVGLLIQDS+VKTGPSVWTGVAGVLQCV
Sbjct: 61  EDIDYSPYEEGEWRLKLWLFFAYVVSFVSLAASVGLLIQDSVVKTGPSVWTGVAGVLQCV 120

Query: 121 FVLV 124
           FVLV
Sbjct: 121 FVLV 124

[Close]

BLAST of MS018582 vs. NCBI nr
Match: XP_022993057.1 (transmembrane protein 50A [Cucurbita maxima] >XP_023549618.1 transmembrane protein 50A-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 245.0 bits (624), Expect = 3.4e-61
Identity = 119/124 (95.97%), Postives = 122/124 (98.39%), Query Frame = 0


Query: 1   MDLAELWSIFGPGVAGAVFGAGWWFWVDAVVCSSVPVSFVHYLPGIFASFAALMFNCVRK 60
           MDLAELWSIFGPGVAGAVFGAGWWFWVDAVVCSSV VSFVHYLPGIFASFAALMFNCVR+
Sbjct: 1   MDLAELWSIFGPGVAGAVFGAGWWFWVDAVVCSSVAVSFVHYLPGIFASFAALMFNCVRR 60

Query: 61  EDIDYSPYEEGEWR-RLWLFFAYVVSFVSLAASVGLLIQDSIVKTGPSVWTGVAGVLQCV 120
           EDIDYSPYEEGEWR +LWLFFAYVVSFVSLAASVGLLIQDS+VKTGPSVWTGVAGVLQCV
Sbjct: 61  EDIDYSPYEEGEWRLKLWLFFAYVVSFVSLAASVGLLIQDSVVKTGPSVWTGVAGVLQCV 120

Query: 121 FVLV 124
           FVLV
Sbjct: 121 FVLV 124

[Close]

BLAST of MS018582 vs. NCBI nr
Match: XP_004140320.1 (transmembrane protein 50A [Cucumis sativus])

HSP 1 Score: 244.2 bits (622), Expect = 5.9e-61
Identity = 119/124 (95.97%), Postives = 121/124 (97.58%), Query Frame = 0


Query: 1   MDLAELWSIFGPGVAGAVFGAGWWFWVDAVVCSSVPVSFVHYLPGIFASFAALMFNCVRK 60
           MDLAELWSIFGPGVAGAVFGAGWWFWVDAVVCSSV VSFVHYLPGIFASFAALMFNCVRK
Sbjct: 1   MDLAELWSIFGPGVAGAVFGAGWWFWVDAVVCSSVAVSFVHYLPGIFASFAALMFNCVRK 60

Query: 61  EDIDYSPYEEGEWR-RLWLFFAYVVSFVSLAASVGLLIQDSIVKTGPSVWTGVAGVLQCV 120
           EDIDYSPYEEGEWR +LWLFFAYVVSFVSLAASVGLLIQDS+VK GPSVWTGVAGVLQCV
Sbjct: 61  EDIDYSPYEEGEWRLKLWLFFAYVVSFVSLAASVGLLIQDSVVKAGPSVWTGVAGVLQCV 120

Query: 121 FVLV 124
           FVLV
Sbjct: 121 FVLV 124

[Close]

BLAST of MS018582 vs. ExPASy Swiss-Prot
Match: Q9CXL1 (Transmembrane protein 50A OS=Mus musculus OX=10090 GN=Tmem50a PE=1 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 2.1e-08
Identity = 40/127 (31.50%), Postives = 58/127 (45.67%), Query Frame = 0


Query: 1   MDLAELWSIFGPGVAGAVFGAGWWFWVDAVVCSSVPVSFVH--YLPGIFASFAALMFNCV 60
           MD  E  +      AG +F  GWW  +DA V       F H  +  G+ A+ A LM N V
Sbjct: 14  MDWGEKRNTIASIAAGVLFFTGWWIIIDAAVMYPRMDQFNHSYHTCGVIATIAFLMINAV 73

Query: 61  RKEDIDYSPYEEG----EWRRLWLFFAYVVSFVSLAASVGLLIQDSIVKTGPSVWTGVAG 120
               +    Y EG       R+WLF  ++++F SL AS+ +L    + K    V+ G+A 
Sbjct: 74  SNGQVRGDSYSEGCLGQTGARIWLFIGFMLAFGSLIASMWILFGGYVAKEKDVVYPGIAV 133

Query: 121 VLQCVFV 122
             Q  F+
Sbjct: 134 FFQNAFI 140

[Close]

BLAST of MS018582 vs. ExPASy Swiss-Prot
Match: O95807 (Transmembrane protein 50A OS=Homo sapiens OX=9606 GN=TMEM50A PE=1 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 3.5e-08
Identity = 37/113 (32.74%), Postives = 54/113 (47.79%), Query Frame = 0


Query: 15  AGAVFGAGWWFWVDAVVCSSVPVSFVH--YLPGIFASFAALMFNCVRKEDIDYSPYEEG- 74
           AG +F  GWW  +DA V       F H  +  G+ A+ A LM N V    +    Y EG 
Sbjct: 28  AGVLFFTGWWIIIDAAVIYPTMKDFNHSYHACGVIATIAFLMINAVSNGQVRGDSYSEGC 87

Query: 75  ---EWRRLWLFFAYVVSFVSLAASVGLLIQDSIVKTGPSVWTGVAGVLQCVFV 122
                 R+WLF  ++++F SL AS+ +L    + K    V+ G+A   Q  F+
Sbjct: 88  LGQTGARIWLFVGFMLAFGSLIASMWILFGGYVAKEKDIVYPGIAVFFQNAFI 140

[Close]

BLAST of MS018582 vs. ExPASy Swiss-Prot
Match: Q3SZL9 (Transmembrane protein 50B OS=Bos taurus OX=9913 GN=TMEM50B PE=2 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 3.9e-07
Identity = 38/123 (30.89%), Postives = 57/123 (46.34%), Query Frame = 0


Query: 1   MDLAELWSIFGPGVAGAVFGAGWWFWVDAVVCSSVPVSFVH--YLPGIFASFAALMFNCV 60
           +D +E  +     VAG +F  GWW  +DA V    P    H  +  G+F++ A  M N V
Sbjct: 16  IDWSERRNAVASVVAGILFFTGWWIMIDAAVVYPKPEQLNHAFHTCGVFSTLAFFMINAV 75

Query: 61  RKEDIDYSPYEEG----EWRRLWLFFAYVVSFVSLAASVGLLIQDSIVKTGPSVWTGVAG 118
               +    YE G       R+WLF  +++ F SL AS+ +L   + V     V+ G+A 
Sbjct: 76  SNAQVRGDSYESGCLGRTGARVWLFIGFMLMFGSLIASMWILF-GAYVTQNTDVYPGLAV 135

[Close]

BLAST of MS018582 vs. ExPASy Swiss-Prot
Match: P56557 (Transmembrane protein 50B OS=Homo sapiens OX=9606 GN=TMEM50B PE=1 SV=2)

HSP 1 Score: 55.8 bits (133), Expect = 3.9e-07
Identity = 38/123 (30.89%), Postives = 57/123 (46.34%), Query Frame = 0


Query: 1   MDLAELWSIFGPGVAGAVFGAGWWFWVDAVVCSSVPVSFVH--YLPGIFASFAALMFNCV 60
           +D +E  +     VAG +F  GWW  +DA V    P    H  +  G+F++ A  M N V
Sbjct: 16  IDWSERRNAVASVVAGILFFTGWWIMIDAAVVYPKPEQLNHAFHTCGVFSTLAFFMINAV 75

Query: 61  RKEDIDYSPYEEG----EWRRLWLFFAYVVSFVSLAASVGLLIQDSIVKTGPSVWTGVAG 118
               +    YE G       R+WLF  +++ F SL AS+ +L   + V     V+ G+A 
Sbjct: 76  SNAQVRGDSYESGCLGRTGARVWLFIGFMLMFGSLIASMWILF-GAYVTQNTDVYPGLAV 135

[Close]

BLAST of MS018582 vs. ExPASy Swiss-Prot
Match: A9CAZ8 (Transmembrane protein 50B OS=Papio anubis OX=9555 GN=TMEM50B PE=3 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 3.9e-07
Identity = 38/123 (30.89%), Postives = 57/123 (46.34%), Query Frame = 0


Query: 1   MDLAELWSIFGPGVAGAVFGAGWWFWVDAVVCSSVPVSFVH--YLPGIFASFAALMFNCV 60
           +D +E  +     VAG +F  GWW  +DA V    P    H  +  G+F++ A  M N V
Sbjct: 16  IDWSERRNAVASVVAGILFFTGWWIMIDAAVVYPKPEQLNHAFHTCGVFSTLAFFMINAV 75

Query: 61  RKEDIDYSPYEEG----EWRRLWLFFAYVVSFVSLAASVGLLIQDSIVKTGPSVWTGVAG 118
               +    YE G       R+WLF  +++ F SL AS+ +L   + V     V+ G+A 
Sbjct: 76  SNAQVRGDSYESGCLGRTGARVWLFIGFMLMFGSLIASMWILF-GAYVTQNTDVYPGLAV 135

[Close]

BLAST of MS018582 vs. ExPASy TrEMBL
Match: A0A6J1CJN8 (transmembrane protein 50A OS=Momordica charantia OX=3673 GN=LOC111012019 PE=3 SV=1)

HSP 1 Score: 249.6 bits (636), Expect = 6.8e-63
Identity = 122/124 (98.39%), Postives = 123/124 (99.19%), Query Frame = 0


Query: 1   MDLAELWSIFGPGVAGAVFGAGWWFWVDAVVCSSVPVSFVHYLPGIFASFAALMFNCVRK 60
           MDLAELWSIFGPGVAGAVFGAGWWFWVDAVVCSSVPVSFVHYLPGIFASFAALMFNCVRK
Sbjct: 1   MDLAELWSIFGPGVAGAVFGAGWWFWVDAVVCSSVPVSFVHYLPGIFASFAALMFNCVRK 60

Query: 61  EDIDYSPYEEGEWR-RLWLFFAYVVSFVSLAASVGLLIQDSIVKTGPSVWTGVAGVLQCV 120
           EDIDYSPYEEGEWR +LWLFFAYVVSFVSLAASVGLLIQDSIVKTGPSVWTGVAGVLQCV
Sbjct: 61  EDIDYSPYEEGEWRLKLWLFFAYVVSFVSLAASVGLLIQDSIVKTGPSVWTGVAGVLQCV 120

Query: 121 FVLV 124
           FVLV
Sbjct: 121 FVLV 124

[Close]

BLAST of MS018582 vs. ExPASy TrEMBL
Match: A0A1S3CCJ8 (transmembrane protein 50A OS=Cucumis melo OX=3656 GN=LOC103499276 PE=3 SV=1)

HSP 1 Score: 246.1 bits (627), Expect = 7.5e-62
Identity = 120/124 (96.77%), Postives = 122/124 (98.39%), Query Frame = 0


Query: 1   MDLAELWSIFGPGVAGAVFGAGWWFWVDAVVCSSVPVSFVHYLPGIFASFAALMFNCVRK 60
           MDLAELWSIFGPGVAGAVFGAGWWFWVDAVVCSSV VSFVHYLPGIFASFAALMFNCVRK
Sbjct: 1   MDLAELWSIFGPGVAGAVFGAGWWFWVDAVVCSSVAVSFVHYLPGIFASFAALMFNCVRK 60

Query: 61  EDIDYSPYEEGEWR-RLWLFFAYVVSFVSLAASVGLLIQDSIVKTGPSVWTGVAGVLQCV 120
           EDIDYSPYEEGEWR +LWLFFAYVVSFVSLAASVGLLIQDS+VKTGPSVWTGVAGVLQCV
Sbjct: 61  EDIDYSPYEEGEWRLKLWLFFAYVVSFVSLAASVGLLIQDSVVKTGPSVWTGVAGVLQCV 120

Query: 121 FVLV 124
           FVLV
Sbjct: 121 FVLV 124

[Close]

BLAST of MS018582 vs. ExPASy TrEMBL
Match: A0A6J1JRP9 (transmembrane protein 50A OS=Cucurbita maxima OX=3661 GN=LOC111489187 PE=3 SV=1)

HSP 1 Score: 245.0 bits (624), Expect = 1.7e-61
Identity = 119/124 (95.97%), Postives = 122/124 (98.39%), Query Frame = 0


Query: 1   MDLAELWSIFGPGVAGAVFGAGWWFWVDAVVCSSVPVSFVHYLPGIFASFAALMFNCVRK 60
           MDLAELWSIFGPGVAGAVFGAGWWFWVDAVVCSSV VSFVHYLPGIFASFAALMFNCVR+
Sbjct: 1   MDLAELWSIFGPGVAGAVFGAGWWFWVDAVVCSSVAVSFVHYLPGIFASFAALMFNCVRR 60

Query: 61  EDIDYSPYEEGEWR-RLWLFFAYVVSFVSLAASVGLLIQDSIVKTGPSVWTGVAGVLQCV 120
           EDIDYSPYEEGEWR +LWLFFAYVVSFVSLAASVGLLIQDS+VKTGPSVWTGVAGVLQCV
Sbjct: 61  EDIDYSPYEEGEWRLKLWLFFAYVVSFVSLAASVGLLIQDSVVKTGPSVWTGVAGVLQCV 120

Query: 121 FVLV 124
           FVLV
Sbjct: 121 FVLV 124

[Close]

BLAST of MS018582 vs. ExPASy TrEMBL
Match: A0A6J1FCW9 (transmembrane protein 50A-like OS=Cucurbita moschata OX=3662 GN=LOC111444629 PE=3 SV=1)

HSP 1 Score: 242.7 bits (618), Expect = 8.3e-61
Identity = 118/124 (95.16%), Postives = 121/124 (97.58%), Query Frame = 0


Query: 1   MDLAELWSIFGPGVAGAVFGAGWWFWVDAVVCSSVPVSFVHYLPGIFASFAALMFNCVRK 60
           MDLAELWSIFGPGVAGAVFGAGWWFWVDAVVCSSV VSFVHYLPGIFAS AALMFNCVR+
Sbjct: 1   MDLAELWSIFGPGVAGAVFGAGWWFWVDAVVCSSVAVSFVHYLPGIFASIAALMFNCVRR 60

Query: 61  EDIDYSPYEEGEWR-RLWLFFAYVVSFVSLAASVGLLIQDSIVKTGPSVWTGVAGVLQCV 120
           EDIDYSPYEEGEWR +LWLFFAYVVSFVSLAASVGLLIQDS+VKTGPSVWTGVAGVLQCV
Sbjct: 61  EDIDYSPYEEGEWRLKLWLFFAYVVSFVSLAASVGLLIQDSVVKTGPSVWTGVAGVLQCV 120

Query: 121 FVLV 124
           FVLV
Sbjct: 121 FVLV 124

[Close]

BLAST of MS018582 vs. ExPASy TrEMBL
Match: D6BRE9 (Transmembrane protein 50a, putative OS=Jatropha curcas OX=180498 GN=JCGZ_12032 PE=2 SV=1)

HSP 1 Score: 241.5 bits (615), Expect = 1.8e-60
Identity = 116/124 (93.55%), Postives = 120/124 (96.77%), Query Frame = 0


Query: 1   MDLAELWSIFGPGVAGAVFGAGWWFWVDAVVCSSVPVSFVHYLPGIFASFAALMFNCVRK 60
           MDLAELW+IFGPGVAGAVFG GWWFW+DAVVCSSV VSFVHYLPGIFASFAALMFNCVRK
Sbjct: 1   MDLAELWAIFGPGVAGAVFGTGWWFWIDAVVCSSVKVSFVHYLPGIFASFAALMFNCVRK 60

Query: 61  EDIDYSPYEEGEWR-RLWLFFAYVVSFVSLAASVGLLIQDSIVKTGPSVWTGVAGVLQCV 120
           EDIDYSPYEEGEWR +LWLFFAYVVSFVSLAASVGLLIQDSIVKTGPSVWTG AGVLQCV
Sbjct: 61  EDIDYSPYEEGEWRLKLWLFFAYVVSFVSLAASVGLLIQDSIVKTGPSVWTGTAGVLQCV 120

Query: 121 FVLV 124
           FVL+
Sbjct: 121 FVLI 124

[Close]

BLAST of MS018582 vs. TAIR 10
Match: AT1G36980.1 (unknown protein; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0220 (InterPro:IPR007919); Has 424 Blast hits to 424 proteins in 159 species: Archae - 0; Bacteria - 0; Metazoa - 228; Fungi - 120; Plants - 62; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink). )

HSP 1 Score: 226.1 bits (575), Expect = 1.5e-59
Identity = 106/124 (85.48%), Postives = 114/124 (91.94%), Query Frame = 0


Query: 1   MDLAELWSIFGPGVAGAVFGAGWWFWVDAVVCSSVPVSFVHYLPGIFASFAALMFNCVRK 60
           MDLAELW+IFGPG +GAVFG GWWFWVDAVVCSS+ V FVHYLPGIFAS  ALMFNCVRK
Sbjct: 1   MDLAELWAIFGPGFSGAVFGTGWWFWVDAVVCSSIQVPFVHYLPGIFASLGALMFNCVRK 60

Query: 61  EDIDYSPYEEGEWR-RLWLFFAYVVSFVSLAASVGLLIQDSIVKTGPSVWTGVAGVLQCV 120
           EDIDYSPY+EGEWR +LWLF AYVV+FVSLAASVGLLIQDS+VKTGPS WTGVAGV QCV
Sbjct: 61  EDIDYSPYDEGEWRLKLWLFIAYVVAFVSLAASVGLLIQDSVVKTGPSTWTGVAGVFQCV 120

Query: 121 FVLV 124
           FVL+
Sbjct: 121 FVLI 124

The following BLAST results are available for this feature:

BLAST of MS018582 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022141734.1	1.4e-62	98.39	transmembrane protein 50A [Momordica charantia]	[more]
XP_008460472.1	1.5e-61	96.77	PREDICTED: transmembrane protein 50A [Cucumis melo]	[more]
XP_038874577.1	2.0e-61	95.97	transmembrane protein 50A [Benincasa hispida]	[more]
XP_022993057.1	3.4e-61	95.97	transmembrane protein 50A [Cucurbita maxima] >XP_023549618.1 transmembrane prote...	[more]
XP_004140320.1	5.9e-61	95.97	transmembrane protein 50A [Cucumis sativus]	[more]

BLAST of MS018582 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9CXL1	2.1e-08	31.50	Transmembrane protein 50A OS=Mus musculus OX=10090 GN=Tmem50a PE=1 SV=1	[more]
O95807	3.5e-08	32.74	Transmembrane protein 50A OS=Homo sapiens OX=9606 GN=TMEM50A PE=1 SV=1	[more]
Q3SZL9	3.9e-07	30.89	Transmembrane protein 50B OS=Bos taurus OX=9913 GN=TMEM50B PE=2 SV=1	[more]
P56557	3.9e-07	30.89	Transmembrane protein 50B OS=Homo sapiens OX=9606 GN=TMEM50B PE=1 SV=2	[more]
A9CAZ8	3.9e-07	30.89	Transmembrane protein 50B OS=Papio anubis OX=9555 GN=TMEM50B PE=3 SV=1	[more]

BLAST of MS018582 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CJN8	6.8e-63	98.39	transmembrane protein 50A OS=Momordica charantia OX=3673 GN=LOC111012019 PE=3 SV...	[more]
A0A1S3CCJ8	7.5e-62	96.77	transmembrane protein 50A OS=Cucumis melo OX=3656 GN=LOC103499276 PE=3 SV=1	[more]
A0A6J1JRP9	1.7e-61	95.97	transmembrane protein 50A OS=Cucurbita maxima OX=3661 GN=LOC111489187 PE=3 SV=1	[more]
A0A6J1FCW9	8.3e-61	95.16	transmembrane protein 50A-like OS=Cucurbita moschata OX=3662 GN=LOC111444629 PE=...	[more]
D6BRE9	1.8e-60	93.55	Transmembrane protein 50a, putative OS=Jatropha curcas OX=180498 GN=JCGZ_12032 P...	[more]

BLAST of MS018582 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G36980.1	1.5e-59	85.48	unknown protein; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0...	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007919	Uncharacterised protein family UPF0220	PFAM	PF05255	UPF0220	coord: 13..122 e-value: 8.3E-19 score: 67.7
IPR007919	Uncharacterised protein family UPF0220	PANTHER	PTHR13180	SMALL MEMBRANE PROTEIN-RELATED	coord: 3..123
None	No IPR available	PANTHER	PTHR13180:SF3	OS02G0566900 PROTEIN	coord: 3..123

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS018582.1	MS018582.1	mRNA