MS018189 (gene) Bitter gourd (TR) v1

Overview


Name	MS018189
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Unknown protein
Location	scaffold56: 392967 .. 393170 (-)
RNA-Seq Expression	MS018189
Synteny	MS018189

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAGGATTCAGCATCTACAGGACAAGGAGGTGGCTCATTGTGGCTGTGCTGCTCCTTCTGCTGACGGTGGTGAGGGCTCAGGACAGTGGAGGACTTGCACCATTGCCTGCTATGGACGCCGGGACCGGATTTCAGGTGACATCTTCCAGTGGTGGAGTTCTGCTACCGATGTTCGTCTGTGTCGTCGCACTTCTTTGGCAT

mRNA sequence

ATGGCAGGATTCAGCATCTACAGGACAAGGAGGTGGCTCATTGTGGCTGTGCTGCTCCTTCTGCTGACGGTGGTGAGGGCTCAGGACAGTGGAGGACTTGCACCATTGCCTGCTATGGACGCCGGGACCGGATTTCAGGTGACATCTTCCAGTGGTGGAGTTCTGCTACCGATGTTCGTCTGTGTCGTCGCACTTCTTTGGCAT

Coding sequence (CDS)

ATGGCAGGATTCAGCATCTACAGGACAAGGAGGTGGCTCATTGTGGCTGTGCTGCTCCTTCTGCTGACGGTGGTGAGGGCTCAGGACAGTGGAGGACTTGCACCATTGCCTGCTATGGACGCCGGGACCGGATTTCAGGTGACATCTTCCAGTGGTGGAGTTCTGCTACCGATGTTCGTCTGTGTCGTCGCACTTCTTTGGCAT

Protein sequence

MAGFSIYRTRRWLIVAVLLLLLTVVRAQDSGGLAPLPAMDAGTGFQVTSSSGGVLLPMFVCVVALLWH

Homology

[Close]

BLAST of MS018189 vs. NCBI nr
Match: KAA0059092.1 (hypothetical protein E6C27_scaffold601G00030 [Cucumis melo var. makuwa] >TYK18840.1 hypothetical protein E5676_scaffold204G00320 [Cucumis melo var. makuwa])

HSP 1 Score: 94.7 bits (234), Expect = 3.2e-16
Identity = 49/68 (72.06%), Postives = 55/68 (80.88%), Query Frame = 0


Query: 1  MAGFSIYRTRRWLIVAVLLLLLTVVRAQDSGGLAPLPAMDAGTGFQVTSSSGGVLLPMFV 60
          MAGFSI+R   WL V  L+LLL V RAQD  GLAPLPAMDAGTGFQVT S+GG+LL MF+
Sbjct: 14 MAGFSIHRA-MWLFVVTLVLLLAVARAQDGAGLAPLPAMDAGTGFQVTFSNGGILLSMFI 73

Query: 61 CVVALLWH 69
           +VALLWH
Sbjct: 74 YLVALLWH 80

[Close]

BLAST of MS018189 vs. NCBI nr
Match: KGN66478.1 (hypothetical protein Csa_007521 [Cucumis sativus])

HSP 1 Score: 89.7 bits (221), Expect = 1.0e-14
Identity = 47/68 (69.12%), Postives = 54/68 (79.41%), Query Frame = 0


Query: 1  MAGFSIYRTRRWLIVAVLLLLLTVVRAQDSGGLAPLPAMDAGTGFQVTSSSGGVLLPMFV 60
          MAGFSI+R  +WL V  L+LLL V RAQD  GLAPLPAMDAGTGFQVT S+GG+LL MF+
Sbjct: 1  MAGFSIHRA-KWLFVVTLVLLLAVARAQDGAGLAPLPAMDAGTGFQVTFSNGGILLSMFI 60

Query: 61 CVVALLWH 69
           +V LL H
Sbjct: 61 SLVVLLLH 67

[Close]

BLAST of MS018189 vs. ExPASy TrEMBL
Match: A0A5D3D5P4 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold204G00320 PE=4 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 1.5e-16
Identity = 49/68 (72.06%), Postives = 55/68 (80.88%), Query Frame = 0


Query: 1  MAGFSIYRTRRWLIVAVLLLLLTVVRAQDSGGLAPLPAMDAGTGFQVTSSSGGVLLPMFV 60
          MAGFSI+R   WL V  L+LLL V RAQD  GLAPLPAMDAGTGFQVT S+GG+LL MF+
Sbjct: 14 MAGFSIHRA-MWLFVVTLVLLLAVARAQDGAGLAPLPAMDAGTGFQVTFSNGGILLSMFI 73

Query: 61 CVVALLWH 69
           +VALLWH
Sbjct: 74 YLVALLWH 80

[Close]

BLAST of MS018189 vs. ExPASy TrEMBL
Match: A0A0A0LXI4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G613500 PE=4 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 5.0e-15
Identity = 47/68 (69.12%), Postives = 54/68 (79.41%), Query Frame = 0


Query: 1  MAGFSIYRTRRWLIVAVLLLLLTVVRAQDSGGLAPLPAMDAGTGFQVTSSSGGVLLPMFV 60
          MAGFSI+R  +WL V  L+LLL V RAQD  GLAPLPAMDAGTGFQVT S+GG+LL MF+
Sbjct: 1  MAGFSIHRA-KWLFVVTLVLLLAVARAQDGAGLAPLPAMDAGTGFQVTFSNGGILLSMFI 60

Query: 61 CVVALLWH 69
           +V LL H
Sbjct: 61 SLVVLLLH 67

The following BLAST results are available for this feature:

BLAST of MS018189 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0059092.1	3.2e-16	72.06	hypothetical protein E6C27_scaffold601G00030 [Cucumis melo var. makuwa] >TYK1884...	[more]
KGN66478.1	1.0e-14	69.12	hypothetical protein Csa_007521 [Cucumis sativus]	[more]

BLAST of MS018189 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MS018189 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3D5P4	1.5e-16	72.06	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A0A0LXI4	5.0e-15	69.12	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G613500 PE=4 SV=1	[more]

BLAST of MS018189 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33659	PROTEIN, PUTATIVE-RELATED-RELATED	coord: 1..68
None	No IPR available	PANTHER	PTHR33659:SF10	SUBFAMILY NOT NAMED	coord: 1..68

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS018189.1	MS018189.1	mRNA