Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCTGAAGGCCGCCAAGAAACTCAAGTTCTGGTCCAAAAACAAGAAGAGAAGGAAGACTCGCGATTCCTCCTATCTTCCTCCTCCGCCGCCGCCGTACTGTTCCTGCTCTTGCTCTTACTCTGCGATCCGGCCCTCTGCTCCGCCGCTGCCGCCCTGGCTAGACGATCGGACTCTTCTCTTGCAATCGGAACCCCCAGCGGCCACCGTAGTTGAAGCGGCGGCGTCGTACCAGCAATACACGGCTCCGAATCCGGTGTACGGAGTGCCGATTGTGGAAATGGGTAGCACAAGGACAAGGGAGAGATCTCTGTTCACCGATTTGGGCGCTAGGTTGATTAGGTGCTTCTGTCCATGTCTTCACGTTCGAGAAGCTTATTACCTGCCA
mRNA sequence
ATGCTGAAGGCCGCCAAGAAACTCAAGTTCTGGTCCAAAAACAAGAAGAGAAGGAAGACTCGCGATTCCTCCTATCTTCCTCCTCCGCCGCCGCCGTACTGTTCCTGCTCTTGCTCTTACTCTGCGATCCGGCCCTCTGCTCCGCCGCTGCCGCCCTGGCTAGACGATCGGACTCTTCTCTTGCAATCGGAACCCCCAGCGGCCACCGTAGTTGAAGCGGCGGCGTCGTACCAGCAATACACGGCTCCGAATCCGGTGTACGGAGTGCCGATTGTGGAAATGGGTAGCACAAGGACAAGGGAGAGATCTCTGTTCACCGATTTGGGCGCTAGGTTGATTAGGTGCTTCTGTCCATGTCTTCACGTTCGAGAAGCTTATTACCTGCCA
Coding sequence (CDS)
ATGCTGAAGGCCGCCAAGAAACTCAAGTTCTGGTCCAAAAACAAGAAGAGAAGGAAGACTCGCGATTCCTCCTATCTTCCTCCTCCGCCGCCGCCGTACTGTTCCTGCTCTTGCTCTTACTCTGCGATCCGGCCCTCTGCTCCGCCGCTGCCGCCCTGGCTAGACGATCGGACTCTTCTCTTGCAATCGGAACCCCCAGCGGCCACCGTAGTTGAAGCGGCGGCGTCGTACCAGCAATACACGGCTCCGAATCCGGTGTACGGAGTGCCGATTGTGGAAATGGGTAGCACAAGGACAAGGGAGAGATCTCTGTTCACCGATTTGGGCGCTAGGTTGATTAGGTGCTTCTGTCCATGTCTTCACGTTCGAGAAGCTTATTACCTGCCA
Protein sequence
MLKAAKKLKFWSKNKKRRKTRDSSYLPPPPPPYCSCSCSYSAIRPSAPPLPPWLDDRTLLLQSEPPAATVVEAAASYQQYTAPNPVYGVPIVEMGSTRTRERSLFTDLGARLIRCFCPCLHVREAYYLP
Homology
BLAST of MS018129 vs. NCBI nr
Match:
XP_022155153.1 (uncharacterized protein LOC111022295 [Momordica charantia])
HSP 1 Score: 259.2 bits (661), Expect = 1.9e-65
Identity = 125/129 (96.90%), Postives = 127/129 (98.45%), Query Frame = 0
Query: 1 MLKAAKKLKFWSKNKKRRKTRDSSYLPPPPPPYCSCSCSYSAIRPSAPPLPPWLDDRTLL 60
MLKAAKKLKFWSK+KKRRKTRDSSYLPPPPPPYCSCSCSYSAIRPSAPPLPPWLDDRTLL
Sbjct: 1 MLKAAKKLKFWSKDKKRRKTRDSSYLPPPPPPYCSCSCSYSAIRPSAPPLPPWLDDRTLL 60
Query: 61 LQSEPPAATVVEAAASYQQYTAPNPVYGVPIVEMGSTRTRERSLFTDLGARLIRCFCPCL 120
LQSEPPAAT VEAAASYQQYTAPNPVYG+PIVEMGS RTRERSLFTDLGARLIRCFCPCL
Sbjct: 61 LQSEPPAATGVEAAASYQQYTAPNPVYGLPIVEMGSIRTRERSLFTDLGARLIRCFCPCL 120
Query: 121 HVREAYYLP 130
HVREAYYLP
Sbjct: 121 HVREAYYLP 129
BLAST of MS018129 vs. NCBI nr
Match:
KAG6601672.1 (hypothetical protein SDJN03_06905, partial [Cucurbita argyrosperma subsp. sororia])
HSP 1 Score: 119.8 bits (299), Expect = 1.8e-23
Identity = 75/140 (53.57%), Postives = 88/140 (62.86%), Query Frame = 0
Query: 1 MLKAA-KKLKFWSKNKKRRKTRD-SSYLPPPPPP--YCSCSCSYSAIRPSAPPLPPWLDD 60
MLKAA KKLKFWS++KKR+K D + + PPPPPP C+C CS SAI+PSAPPLPPWLDD
Sbjct: 1 MLKAAKKKLKFWSRSKKRKKIPDPNDFTPPPPPPCHCCTCHCS-SAIQPSAPPLPPWLDD 60
Query: 61 RTLLLQSEPPAATV---VEAAASYQQYTAPNPVYGVP-IVEMGSTRTRERS-------LF 120
R P A + + AA YQQY P+PVYGVP IV+ S R RS
Sbjct: 61 RIFPPPEHPEEAEIAAPLVAAPLYQQYMDPDPVYGVPIIVQTDSRRDGSRSRRFAVSGCV 120
Query: 121 TDLGARLIRCFCPCLHVREA 126
DLG R+I CFCPC +A
Sbjct: 121 GDLGIRIIGCFCPCFRTPKA 139
BLAST of MS018129 vs. NCBI nr
Match:
KAE8007888.1 (hypothetical protein FH972_004447 [Carpinus fangiana])
HSP 1 Score: 112.5 bits (280), Expect = 2.8e-21
Identity = 70/163 (42.94%), Postives = 86/163 (52.76%), Query Frame = 0
Query: 1 MLKAAKKLKFWSKNKKRRKTRDSSYLPPPPPPYCSCSCSYSAIRPSAPPLPPWLDDRTLL 60
M+KA KKLKFWS+ K+++KT+D YLPPPP C C S + +PSAPPLPPWLD
Sbjct: 3 MMKAVKKLKFWSRKKRKKKTQDPYYLPPPP---CHCYHSCYSTQPSAPPLPPWLDLEQTH 62
Query: 61 LQSEPPAA-------------------------------TVVEAAA---SYQQYTAPNPV 120
Q+ P A T+ +AA SYQQY APNPV
Sbjct: 63 DQAIPEPALQPVPDLSYPNQARVPSIQEVVTETSPIMYPTLPDAAVSTPSYQQYMAPNPV 122
Query: 121 YGVPIVEMGSTRTRER-----SLFTDLGARLIRCFCPCLHVRE 125
YG+P+V +G T RER + G L RCFCPCL +RE
Sbjct: 123 YGIPVV-VGETARRERRAGFFGCVVNFGIHLFRCFCPCLSIRE 161
BLAST of MS018129 vs. NCBI nr
Match:
XP_022933064.1 (uncharacterized protein LOC111439771 [Cucurbita moschata])
HSP 1 Score: 109.4 bits (272), Expect = 2.4e-20
Identity = 70/137 (51.09%), Postives = 83/137 (60.58%), Query Frame = 0
Query: 1 MLKAA-KKLKFWSKNKKRRKTRDSSYLPPPPPPYCSCSCSYSAIRPSAPPLPPWLDDRTL 60
MLKAA KKLKFWS++KKR+K + + PPP C+C CS SAI+PSAPPLPPWLDDR
Sbjct: 1 MLKAAKKKLKFWSRSKKRKKIPNPNDF-PPPCHCCTCHCS-SAIQPSAPPLPPWLDDRIF 60
Query: 61 LLQSEPPAATV---VEAAASYQQYTAPNPVYGVP-IVEMGSTRTRERS-------LFTDL 120
P A + + AA YQ Y P+PVYGVP IV+ S R RS +L
Sbjct: 61 PPSEHPEEAEIAAPLVAAPLYQHYMDPDPVYGVPIIVQTDSRRDGSRSRRFAVSGCVGEL 120
Query: 121 GARLIRCFCPCLHVREA 126
G R+I CFCPC EA
Sbjct: 121 GIRIIGCFCPCFRTPEA 135
BLAST of MS018129 vs. NCBI nr
Match:
XP_009355452.1 (PREDICTED: extensin [Pyrus x bretschneideri])
HSP 1 Score: 109.4 bits (272), Expect = 2.4e-20
Identity = 71/180 (39.44%), Postives = 84/180 (46.67%), Query Frame = 0
Query: 1 MLKAAKKLKFWSKNKKRRKTRDSSYL-------PPPPPP---YCSCSCSYSAIRPSAPPL 60
M+KA KKLKFW + KK+RKT Y PPPPPP YCS S S S+ +PSAPPL
Sbjct: 1 MIKAVKKLKFWPRKKKKRKTHHQPYCPHPPPQRPPPPPPRHHYCSFSSSSSSTQPSAPPL 60
Query: 61 PPWLD-DRTLLLQSEPPAATVVE------------------------------AAASYQQ 120
PPWLD + T PP E ASYQQ
Sbjct: 61 PPWLDAEYTYETPLAPPFQPAPEFSYHHHDPVPSQQETAFNGGSSSTEYPYPIPTASYQQ 120
Query: 121 YTAPNPVYGVPIVE---------------MGSTRTRERSLFTDLGARLIRCFCPCLHVRE 125
YT PNPVYGVP+++ ++ TR + D G RL C CPCLH+RE
Sbjct: 121 YTDPNPVYGVPVIQTQTQTPRATTKERCYAAASATRVLNCVVDWGIRLFHCICPCLHIRE 180
BLAST of MS018129 vs. ExPASy TrEMBL
Match:
A0A6J1DM77 (uncharacterized protein LOC111022295 OS=Momordica charantia OX=3673 GN=LOC111022295 PE=4 SV=1)
HSP 1 Score: 259.2 bits (661), Expect = 9.0e-66
Identity = 125/129 (96.90%), Postives = 127/129 (98.45%), Query Frame = 0
Query: 1 MLKAAKKLKFWSKNKKRRKTRDSSYLPPPPPPYCSCSCSYSAIRPSAPPLPPWLDDRTLL 60
MLKAAKKLKFWSK+KKRRKTRDSSYLPPPPPPYCSCSCSYSAIRPSAPPLPPWLDDRTLL
Sbjct: 1 MLKAAKKLKFWSKDKKRRKTRDSSYLPPPPPPYCSCSCSYSAIRPSAPPLPPWLDDRTLL 60
Query: 61 LQSEPPAATVVEAAASYQQYTAPNPVYGVPIVEMGSTRTRERSLFTDLGARLIRCFCPCL 120
LQSEPPAAT VEAAASYQQYTAPNPVYG+PIVEMGS RTRERSLFTDLGARLIRCFCPCL
Sbjct: 61 LQSEPPAATGVEAAASYQQYTAPNPVYGLPIVEMGSIRTRERSLFTDLGARLIRCFCPCL 120
Query: 121 HVREAYYLP 130
HVREAYYLP
Sbjct: 121 HVREAYYLP 129
BLAST of MS018129 vs. ExPASy TrEMBL
Match:
A0A5N6QN08 (Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_004447 PE=4 SV=1)
HSP 1 Score: 112.5 bits (280), Expect = 1.4e-21
Identity = 70/163 (42.94%), Postives = 86/163 (52.76%), Query Frame = 0
Query: 1 MLKAAKKLKFWSKNKKRRKTRDSSYLPPPPPPYCSCSCSYSAIRPSAPPLPPWLDDRTLL 60
M+KA KKLKFWS+ K+++KT+D YLPPPP C C S + +PSAPPLPPWLD
Sbjct: 3 MMKAVKKLKFWSRKKRKKKTQDPYYLPPPP---CHCYHSCYSTQPSAPPLPPWLDLEQTH 62
Query: 61 LQSEPPAA-------------------------------TVVEAAA---SYQQYTAPNPV 120
Q+ P A T+ +AA SYQQY APNPV
Sbjct: 63 DQAIPEPALQPVPDLSYPNQARVPSIQEVVTETSPIMYPTLPDAAVSTPSYQQYMAPNPV 122
Query: 121 YGVPIVEMGSTRTRER-----SLFTDLGARLIRCFCPCLHVRE 125
YG+P+V +G T RER + G L RCFCPCL +RE
Sbjct: 123 YGIPVV-VGETARRERRAGFFGCVVNFGIHLFRCFCPCLSIRE 161
BLAST of MS018129 vs. ExPASy TrEMBL
Match:
A0A6J1EYP6 (uncharacterized protein LOC111439771 OS=Cucurbita moschata OX=3662 GN=LOC111439771 PE=4 SV=1)
HSP 1 Score: 109.4 bits (272), Expect = 1.1e-20
Identity = 70/137 (51.09%), Postives = 83/137 (60.58%), Query Frame = 0
Query: 1 MLKAA-KKLKFWSKNKKRRKTRDSSYLPPPPPPYCSCSCSYSAIRPSAPPLPPWLDDRTL 60
MLKAA KKLKFWS++KKR+K + + PPP C+C CS SAI+PSAPPLPPWLDDR
Sbjct: 1 MLKAAKKKLKFWSRSKKRKKIPNPNDF-PPPCHCCTCHCS-SAIQPSAPPLPPWLDDRIF 60
Query: 61 LLQSEPPAATV---VEAAASYQQYTAPNPVYGVP-IVEMGSTRTRERS-------LFTDL 120
P A + + AA YQ Y P+PVYGVP IV+ S R RS +L
Sbjct: 61 PPSEHPEEAEIAAPLVAAPLYQHYMDPDPVYGVPIIVQTDSRRDGSRSRRFAVSGCVGEL 120
Query: 121 GARLIRCFCPCLHVREA 126
G R+I CFCPC EA
Sbjct: 121 GIRIIGCFCPCFRTPEA 135
BLAST of MS018129 vs. ExPASy TrEMBL
Match:
A0A6P4PX64 (uncharacterized protein LOC108483150 OS=Gossypium arboreum OX=29729 GN=LOC108483150 PE=4 SV=1)
HSP 1 Score: 107.5 bits (267), Expect = 4.4e-20
Identity = 69/164 (42.07%), Postives = 86/164 (52.44%), Query Frame = 0
Query: 1 MLKAAKKLKFWSKNKKRRKTRDSSYLPPPPPPYCSCSCS-------------YSAIRPSA 60
M KA KKLKFWS+ K++RK + + P P +C C CS YS ++PSA
Sbjct: 1 MFKAVKKLKFWSRKKRKRKRKSLA----PQPSHCICHCSHSTSPHYYQCNYPYSPLQPSA 60
Query: 61 PPLPPWL------DDRTLLLQSEP----------------PAATVVEAAA--SYQQYTAP 120
PPLPPWL D+ L Q+E +AT++ AAA SYQQY
Sbjct: 61 PPLPPWLQAELTQDEFPTLEQAEAEPFPEFSHPTDLVQDIESATMIPAAAGPSYQQYMVS 120
Query: 121 NPVYGVPIVEMGSTRTRERSLF---TDLGARLIRCFCPCLHVRE 125
NPVYG P+V+ R R F D+ RLIRCFCPC+HVRE
Sbjct: 121 NPVYGPPVVQQTGRRERSGGYFGCIIDISLRLIRCFCPCVHVRE 160
BLAST of MS018129 vs. ExPASy TrEMBL
Match:
A0A540MBG6 (Uncharacterized protein OS=Malus baccata OX=106549 GN=C1H46_018370 PE=4 SV=1)
HSP 1 Score: 107.5 bits (267), Expect = 4.4e-20
Identity = 73/181 (40.33%), Postives = 85/181 (46.96%), Query Frame = 0
Query: 1 MLKAAKKLKFWSKNKKRRKTRDSSYL-------PPPPPP---YCSCSCSYSAIRPSAPPL 60
M+KA KKLKFW + KK+RKT Y PPPPPP Y SCS S S+ +PSAPPL
Sbjct: 47 MIKAVKKLKFWPRKKKKRKTHHQPYCPHPPPQRPPPPPPRNYYWSCSSSSSSTQPSAPPL 106
Query: 61 PPWLDDRTLL-------LQSEP----------PAATVVEAA-----------------AS 120
PPWLD LQ P PA + E A AS
Sbjct: 107 PPWLDAEYTYETPLAPPLQPAPEFSYHHHHHDPAPSQQETAFNGCSSISTQYHHPIPTAS 166
Query: 121 YQQYTAPNPVYGVPIVEMGSTR-------------TRERSLFTDLGARLIRCFCPCLHVR 125
YQQYT PNPVYGVP+++ + R TR + D G RL C CPC +R
Sbjct: 167 YQQYTDPNPVYGVPVIQTQTPRATTNERCYAAASATRALNCVVDWGIRLFHCICPCFRIR 226
BLAST of MS018129 vs. TAIR 10
Match:
AT4G24265.1 (unknown protein; Has 3 Blast hits to 3 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 3; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )
HSP 1 Score: 61.2 bits (147), Expect = 6.9e-10
Identity = 50/145 (34.48%), Postives = 65/145 (44.83%), Query Frame = 0
Query: 6 KKLKFWSKNKKRRKTRDSSYLPPPPPPYCSCSCSYSA----IRPSAPPLPPWLDDRTLLL 65
KKL FWS+ K++RK P P +CSC S +A + P+APPLP W D+ L
Sbjct: 2 KKLTFWSRKKRKRK-----QACPSQPHHCSCEYSSTAVAVLVEPTAPPLPYWFDETRSLC 61
Query: 66 QSEPPA-------------ATVVEAA------------ASYQQYTAPNPVYGVPIVEMGS 119
E + T+VEA SYQQY PNP V VE +
Sbjct: 62 PPETSSFPWTTHHLPHQQEETIVEATPLLSQVSDLRIYQSYQQYMVPNPTSNVHFVE-PA 121
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| XP_022155153.1 | 1.9e-65 | 96.90 | uncharacterized protein LOC111022295 [Momordica charantia] | [more] |
| KAG6601672.1 | 1.8e-23 | 53.57 | hypothetical protein SDJN03_06905, partial [Cucurbita argyrosperma subsp. sorori... | [more] |
| KAE8007888.1 | 2.8e-21 | 42.94 | hypothetical protein FH972_004447 [Carpinus fangiana] | [more] |
| XP_022933064.1 | 2.4e-20 | 51.09 | uncharacterized protein LOC111439771 [Cucurbita moschata] | [more] |
| XP_009355452.1 | 2.4e-20 | 39.44 | PREDICTED: extensin [Pyrus x bretschneideri] | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| A0A6J1DM77 | 9.0e-66 | 96.90 | uncharacterized protein LOC111022295 OS=Momordica charantia OX=3673 GN=LOC111022... | [more] |
| A0A5N6QN08 | 1.4e-21 | 42.94 | Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_004447 PE=4 SV=1 | [more] |
| A0A6J1EYP6 | 1.1e-20 | 51.09 | uncharacterized protein LOC111439771 OS=Cucurbita moschata OX=3662 GN=LOC1114397... | [more] |
| A0A6P4PX64 | 4.4e-20 | 42.07 | uncharacterized protein LOC108483150 OS=Gossypium arboreum OX=29729 GN=LOC108483... | [more] |
| A0A540MBG6 | 4.4e-20 | 40.33 | Uncharacterized protein OS=Malus baccata OX=106549 GN=C1H46_018370 PE=4 SV=1 | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| AT4G24265.1 | 6.9e-10 | 34.48 | unknown protein; Has 3 Blast hits to 3 proteins in 2 species: Archae - 0; Bacter... | [more] |
