Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: CDS polypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGACGTCTTTATTCCCGAAGAATACGCAATTAGGCGTCGGATCGAGAAACGCGCCGCCGCCGGACTCAAACAACGCCCGTCCGAGGCCGCCGCCGTCTCTGCCAGGAGTCACAACGACAAGCTTAAGAAGACGCCCGCCGGAGAAACGGGATTCAGGTTCGCCTCCGCCTCCGCCTCCGCCGCTGCCGACAATGTCGTTTTCACTTGCTTCTCTGCC mRNA sequence
ATGGACGTCTTTATTCCCGAAGAATACGCAATTAGGCGTCGGATCGAGAAACGCGCCGCCGCCGGACTCAAACAACGCCCGTCCGAGGCCGCCGCCGTCTCTGCCAGGAGTCACAACGACAAGCTTAAGAAGACGCCCGCCGGAGAAACGGGATTCAGGTTCGCCTCCGCCTCCGCCTCCGCCGCTGCCGACAATGTCGTTTTCACTTGCTTCTCTGCC Coding sequence (CDS)
ATGGACGTCTTTATTCCCGAAGAATACGCAATTAGGCGTCGGATCGAGAAACGCGCCGCCGCCGGACTCAAACAACGCCCGTCCGAGGCCGCCGCCGTCTCTGCCAGGAGTCACAACGACAAGCTTAAGAAGACGCCCGCCGGAGAAACGGGATTCAGGTTCGCCTCCGCCTCCGCCTCCGCCGCTGCCGACAATGTCGTTTTCACTTGCTTCTCTGCC Protein sequence
MDVFIPEEYAIRRRIEKRAAAGLKQRPSEAAAVSARSHNDKLKKTPAGETGFRFASASASAAADNVVFTCFSA
Homology
BLAST of MS017988 vs. NCBI nr
Match:
KAE8647863.1 (hypothetical protein Csa_000530 [Cucumis sativus])
HSP 1 Score: 53.9 bits (128), Expect = 6.7e-04
Identity = 36/74 (48.65%), Postives = 42/74 (56.76%), Query Frame = 0
Query: 1 MDVFIPEEYAIRRRIEKRAAAGLKQRPSEAAAVSARSHN-DKLKKTPAGETGFRFASASA 60 MDVFIP++Y IRRRIEK+ AA + R N DK K+ PA FRF Sbjct: 71 MDVFIPDDYVIRRRIEKKLAAQAPVKTRHPHPADQRPRNSDKEKEAPAKTGLFRF----T 130 Query: 61 SAAADNVVFTCFSA 74 + ADNVVF CFSA Sbjct: 131 ATGADNVVFNCFSA 140
BLAST of MS017988 vs. ExPASy TrEMBL
Match:
A0A0A0KKA7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G154820 PE=4 SV=1)
HSP 1 Score: 53.9 bits (128), Expect = 3.2e-04
Identity = 36/74 (48.65%), Postives = 42/74 (56.76%), Query Frame = 0
Query: 1 MDVFIPEEYAIRRRIEKRAAAGLKQRPSEAAAVSARSHN-DKLKKTPAGETGFRFASASA 60 MDVFIP++Y IRRRIEK+ AA + R N DK K+ PA FRF Sbjct: 1 MDVFIPDDYVIRRRIEKKLAAQAPVKTRHPHPADQRPRNSDKEKEAPAKTGLFRF----T 60 Query: 61 SAAADNVVFTCFSA 74 + ADNVVF CFSA Sbjct: 61 ATGADNVVFNCFSA 70
The following BLAST results are available for this feature:
Match Name E-value Identity Description
KAE8647863.1 6.7e-04 48.65 hypothetical protein Csa_000530 [Cucumis sativus] [more]
Match Name E-value Identity Description
Match Name E-value Identity Description
A0A0A0KKA7 3.2e-04 48.65 Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G154820 PE=4 SV=1 [more]
Match Name E-value Identity Description
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25
A T G G A C G T C T T T A T T C C C G A A G A A T A C G C A A T T A G G C G T C G G A T C G A G A A A C G C G C C G C C G C C G G A C T C A A A C A A C G C C C G T C C G A G G C C G C C G C C G T C T C T G C C A G G A G T C A C A A C G A C A A G C T T A A G A A G A C G C C C G C C G G A G A A A C G G G A T T C A G G T T C G C C T C C G C C T C C G C C T C C G C C G C T G C C G A C A A T G T C G T T T T C A C T T G C T T C T C T G C C 20 40 60 80 100 120 140 160 180 200 Score = Sequence mobidb-lite
IPR Term IPR Description Source Source Term Source Description Alignment
None No IPR available MOBIDB_LITE mobidb-lite disorder_prediction coord: 26..46
Relationships
The following mRNA feature(s) are a part of this gene:
Feature Name Unique Name Type
MS017988.1 MS017988.1 mRNA