Homology
BLAST of MS017913 vs. NCBI nr
Match:
XP_022158862.1 (LOW QUALITY PROTEIN: DNA-directed RNA polymerases I and III subunit RPAC1-like [Momordica charantia])
HSP 1 Score: 767.7 bits (1981), Expect = 4.8e-218
Identity = 381/390 (97.69%), Postives = 383/390 (98.21%), Query Frame = 0
Query: 1 MSAKDKRSRDISGSKFEQCVGKEGIEWIMNLPDVPMKLPPHLELHRTRVEFKADAPIHTD 60
MSAKDKRSRDI GSKFEQCVGKEGIEWIMNLPDVPMKLPPHLELHRTRVE KADAPIHTD
Sbjct: 1 MSAKDKRSRDILGSKFEQCVGKEGIEWIMNLPDVPMKLPPHLELHRTRVECKADAPIHTD 60
Query: 61 TIQYFGAYASMGVDNSLQLDYFRNNFKIEVIDLGEDDIEFDMIGIDPALANAFRRILIAE 120
TIQY GAYASMGVDNSLQLDYFRNNFKIEVIDLGEDDIEFDMIGIDPALANAFRR LIAE
Sbjct: 61 TIQYSGAYASMGVDNSLQLDYFRNNFKIEVIDLGEDDIEFDMIGIDPALANAFRRTLIAE 120
Query: 121 VPTMAIEKVLVANNTSIIQDEVLAHRLGLIPIHVDPRLFEYSDKDTPNEKNTIVFRLHAR 180
VPTMAIEKVLVANNTSIIQDEVLAHRLGL+PIHVDPRLFEYSD+DTPNEKNTIVFRLHAR
Sbjct: 121 VPTMAIEKVLVANNTSIIQDEVLAHRLGLVPIHVDPRLFEYSDEDTPNEKNTIVFRLHAR 180
Query: 181 CERGKPRLTVTSKALTWLPNGSEFPLVSDKSVPNSKPKTYTSFSCSQVALPEFSKNPIGP 240
CERGKPRLTVTSKALTWLPNGSEFPLVSDKSVPNSKPKTYTSFSCSQ ALPEFSKNPIGP
Sbjct: 181 CERGKPRLTVTSKALTWLPNGSEFPLVSDKSVPNSKPKTYTSFSCSQDALPEFSKNPIGP 240
Query: 241 KDSDIIIARLGPGQEIELEAHAVKGMGKTHAKWSPVATAWYRMLPEVVLLEEIEDELAEE 300
KDSDIIIARL PGQEIELEAHAVKGMGKTHAKWSPVATAWYRMLPEVVLLEEIEDELAEE
Sbjct: 241 KDSDIIIARLCPGQEIELEAHAVKGMGKTHAKWSPVATAWYRMLPEVVLLEEIEDELAEE 300
Query: 301 LKSKCPVDVFDIEDIANGKKRATVARPRSCTLCRECIRGEAWEKRVSLRRVKNHFIFKIE 360
LKSKCPVDVFDIEDIANGKKRATV RPRSCTLCRECIRGEAWEKRVSLRRVKNHFIFKIE
Sbjct: 301 LKSKCPVDVFDIEDIANGKKRATVTRPRSCTLCRECIRGEAWEKRVSLRRVKNHFIFKIE 360
Query: 361 STGALPPEVLFTEAIKILEDKCERLIAELS 391
STGALPPEVLFTEAIKILEDKCERLIAELS
Sbjct: 361 STGALPPEVLFTEAIKILEDKCERLIAELS 390
BLAST of MS017913 vs. NCBI nr
Match:
XP_022158557.1 (DNA-directed RNA polymerases I and III subunit RPAC1-like isoform X1 [Momordica charantia] >XP_022158558.1 DNA-directed RNA polymerases I and III subunit RPAC1-like isoform X1 [Momordica charantia] >XP_022158559.1 DNA-directed RNA polymerases I and III subunit RPAC1-like isoform X1 [Momordica charantia])
HSP 1 Score: 721.5 bits (1861), Expect = 4.0e-204
Identity = 356/380 (93.68%), Postives = 365/380 (96.05%), Query Frame = 0
Query: 11 ISGSKFEQCVGKEGIEWIMNLPDVPMKLPPHLELHRTRVEFKADAPIHTDTIQYFGAYAS 70
+S S+ EQ GKEGIEWIMNLPDVPMKLPPHLE+ RTRVE KADAPIHTDTIQY GAYAS
Sbjct: 1 MSDSESEQVAGKEGIEWIMNLPDVPMKLPPHLEMQRTRVECKADAPIHTDTIQYSGAYAS 60
Query: 71 MGVDNSLQLDYFRNNFKIEVIDLGEDDIEFDMIGIDPALANAFRRILIAEVPTMAIEKVL 130
MGVDNSL+LDYFRNNFKIEVIDLGEDDIEFDMIGIDPALANAFRRILIAEVPTMAIEKVL
Sbjct: 61 MGVDNSLRLDYFRNNFKIEVIDLGEDDIEFDMIGIDPALANAFRRILIAEVPTMAIEKVL 120
Query: 131 VANNTSIIQDEVLAHRLGLIPIHVDPRLFEYSDKDTPNEKNTIVFRLHARCERGKPRLTV 190
VANNTS+IQDEVLAHRLGLIPIHVDPRLFEYSDKDTPNEKNTIVFRLHARCERGKPRLTV
Sbjct: 121 VANNTSLIQDEVLAHRLGLIPIHVDPRLFEYSDKDTPNEKNTIVFRLHARCERGKPRLTV 180
Query: 191 TSKALTWLPNGSEFPLVSDKSVPNSKPKTYTSFSCSQVALPEFSKNPIGPKDSDIIIARL 250
TSK LTWLPNGSEFPLVSDKSVPNSKPKTYTSFSCSQ LPEFS N IGPKD+DIIIARL
Sbjct: 181 TSKLLTWLPNGSEFPLVSDKSVPNSKPKTYTSFSCSQDTLPEFSNNSIGPKDNDIIIARL 240
Query: 251 GPGQEIELEAHAVKGMGKTHAKWSPVATAWYRMLPEVVLLEEIEDELAEELKSKCPVDVF 310
GPGQEIELEAHAVKGMGKTHAKWSPVATAWY+MLPEVVL EEIEDELAEELK KCPVDVF
Sbjct: 241 GPGQEIELEAHAVKGMGKTHAKWSPVATAWYKMLPEVVLSEEIEDELAEELKKKCPVDVF 300
Query: 311 DIEDIANGKKRATVARPRSCTLCRECIRGEAWEKRVSLRRVKNHFIFKIESTGALPPEVL 370
DIEDIANGKKRA VARPRSCTLCRECIRGEAWEKRVSLRRVK+HFIFKIESTGALPPEVL
Sbjct: 301 DIEDIANGKKRAIVARPRSCTLCRECIRGEAWEKRVSLRRVKDHFIFKIESTGALPPEVL 360
Query: 371 FTEAIKILEDKCERLIAELS 391
FTEA+KILEDKCERLIAELS
Sbjct: 361 FTEAVKILEDKCERLIAELS 380
BLAST of MS017913 vs. NCBI nr
Match:
XP_038903474.1 (DNA-directed RNA polymerases I and III subunit RPAC1 isoform X1 [Benincasa hispida] >XP_038903475.1 DNA-directed RNA polymerases I and III subunit RPAC1 isoform X1 [Benincasa hispida] >XP_038903476.1 DNA-directed RNA polymerases I and III subunit RPAC1 isoform X1 [Benincasa hispida])
HSP 1 Score: 706.1 bits (1821), Expect = 1.7e-199
Identity = 354/391 (90.54%), Postives = 369/391 (94.37%), Query Frame = 0
Query: 1 MSAKDKRSRDISGSKFEQ-CVGKEGIEWIMNLPDVPMKLPPHLELHRTRVEFKADAPIHT 60
MS KDK ++S S+ EQ V KEGIEWIMNLPDVPMKLPPHLEL RTRVE KADAPIHT
Sbjct: 1 MSGKDKSLHNMSDSESEQEGVAKEGIEWIMNLPDVPMKLPPHLELQRTRVECKADAPIHT 60
Query: 61 DTIQYFGAYASMGVDNSLQLDYFRNNFKIEVIDLGEDDIEFDMIGIDPALANAFRRILIA 120
DTIQY GA+ASMGVDNSL+LDYFRNNFKIEVIDL EDDIEFDMIGIDPALANAFRRILIA
Sbjct: 61 DTIQYSGAFASMGVDNSLRLDYFRNNFKIEVIDLKEDDIEFDMIGIDPALANAFRRILIA 120
Query: 121 EVPTMAIEKVLVANNTSIIQDEVLAHRLGLIPIHVDPRLFEYSDKDTPNEKNTIVFRLHA 180
EVPTMAIEKVLVANNTSI+QDEVLAHRLGL+PIHVDPRLFEYSDKDTPNEKNTIVFRLHA
Sbjct: 121 EVPTMAIEKVLVANNTSIVQDEVLAHRLGLVPIHVDPRLFEYSDKDTPNEKNTIVFRLHA 180
Query: 181 RCERGKPRLTVTSKALTWLPNGSEFPLVSDKSVPNSKPKTYTSFSCSQVALPEFSKNPIG 240
CERGK RLTVTSKALTWLPNGSEFPLVSDKSV NSKPKTYTSFSCSQ LPEFS NPIG
Sbjct: 181 CCERGKQRLTVTSKALTWLPNGSEFPLVSDKSVSNSKPKTYTSFSCSQDTLPEFSNNPIG 240
Query: 241 PKDSDIIIARLGPGQEIELEAHAVKGMGKTHAKWSPVATAWYRMLPEVVLLEEIEDELAE 300
PKDSDII+ARLGPGQEIELEAHAVKGMGKTHAKWSPVATAWYRMLPEVVLLEEI+DELAE
Sbjct: 241 PKDSDIILARLGPGQEIELEAHAVKGMGKTHAKWSPVATAWYRMLPEVVLLEEIKDELAE 300
Query: 301 ELKSKCPVDVFDIEDIANGKKRATVARPRSCTLCRECIRGEAWEKRVSLRRVKNHFIFKI 360
ELK KCPV+VFDIEDIA GKKRATVARPR+CTLCRECIRG+ WEKRV+LRRVK+HFIFKI
Sbjct: 301 ELKKKCPVNVFDIEDIA-GKKRATVARPRACTLCRECIRGDVWEKRVALRRVKDHFIFKI 360
Query: 361 ESTGALPPEVLFTEAIKILEDKCERLIAELS 391
ESTGALPPEVLFTEA+KILEDKCERLIAELS
Sbjct: 361 ESTGALPPEVLFTEAVKILEDKCERLIAELS 390
BLAST of MS017913 vs. NCBI nr
Match:
KAG7028290.1 (DNA-directed RNA polymerases I and III subunit RPAC1 [Cucurbita argyrosperma subsp. argyrosperma])
HSP 1 Score: 703.0 bits (1813), Expect = 1.5e-198
Identity = 347/390 (88.97%), Postives = 365/390 (93.59%), Query Frame = 0
Query: 1 MSAKDKRSRDISGSKFEQCVGKEGIEWIMNLPDVPMKLPPHLELHRTRVEFKADAPIHTD 60
MS K K ++S S EQ VGKEGIEWIMNLPDVPMKLPPH+EL RTRVE KADAPIHTD
Sbjct: 1 MSGKGKNLHNMSESDSEQDVGKEGIEWIMNLPDVPMKLPPHVELQRTRVECKADAPIHTD 60
Query: 61 TIQYFGAYASMGVDNSLQLDYFRNNFKIEVIDLGEDDIEFDMIGIDPALANAFRRILIAE 120
TIQY GAYAS+G+DNSL+LD FR NFKIEVIDL EDD+EFDMIGIDP+LANAFRRILIAE
Sbjct: 61 TIQYSGAYASLGIDNSLRLDSFRKNFKIEVIDLKEDDMEFDMIGIDPSLANAFRRILIAE 120
Query: 121 VPTMAIEKVLVANNTSIIQDEVLAHRLGLIPIHVDPRLFEYSDKDTPNEKNTIVFRLHAR 180
VPTMAIEKVLVANNTSI+QDEVLAHRLGLIPI VDPRLFEYSDKDTPNEKNTIVFRLH R
Sbjct: 121 VPTMAIEKVLVANNTSIVQDEVLAHRLGLIPIRVDPRLFEYSDKDTPNEKNTIVFRLHVR 180
Query: 181 CERGKPRLTVTSKALTWLPNGSEFPLVSDKSVPNSKPKTYTSFSCSQVALPEFSKNPIGP 240
CERGKPRLT TSKALTWLPNGSEFPLVSDKSV N+KPKTYTSFSCSQ LPEF+ NPIGP
Sbjct: 181 CERGKPRLTATSKALTWLPNGSEFPLVSDKSVSNTKPKTYTSFSCSQDTLPEFANNPIGP 240
Query: 241 KDSDIIIARLGPGQEIELEAHAVKGMGKTHAKWSPVATAWYRMLPEVVLLEEIEDELAEE 300
KD DII+ARL GQEIELEAHAVKGMGKTHAKWSPVATAWYRMLPEVVLLE+IEDELAEE
Sbjct: 241 KDGDIILARLSSGQEIELEAHAVKGMGKTHAKWSPVATAWYRMLPEVVLLEDIEDELAEE 300
Query: 301 LKSKCPVDVFDIEDIANGKKRATVARPRSCTLCRECIRGEAWEKRVSLRRVKNHFIFKIE 360
LK+KCPV+VFDIEDIANGKKRATVARPR+CTLCRECIRGEAWEKRVSLRRVK+HFIFKIE
Sbjct: 301 LKNKCPVNVFDIEDIANGKKRATVARPRACTLCRECIRGEAWEKRVSLRRVKDHFIFKIE 360
Query: 361 STGALPPEVLFTEAIKILEDKCERLIAELS 391
STGALPPEVLFTEA+KILEDKCERLIAELS
Sbjct: 361 STGALPPEVLFTEAVKILEDKCERLIAELS 390
BLAST of MS017913 vs. NCBI nr
Match:
KAG6596753.1 (DNA-directed RNA polymerases I and III subunit RPAC1, partial [Cucurbita argyrosperma subsp. sororia])
HSP 1 Score: 701.0 bits (1808), Expect = 5.6e-198
Identity = 348/391 (89.00%), Postives = 366/391 (93.61%), Query Frame = 0
Query: 1 MSAKDKRSRDISGSKFEQ-CVGKEGIEWIMNLPDVPMKLPPHLELHRTRVEFKADAPIHT 60
MS KDK ++S S EQ VGKEGIEWIMNLPDVPMKLPPH+EL RTRVE KADAPIHT
Sbjct: 282 MSGKDKNLHNMSESDSEQEDVGKEGIEWIMNLPDVPMKLPPHVELQRTRVECKADAPIHT 341
Query: 61 DTIQYFGAYASMGVDNSLQLDYFRNNFKIEVIDLGEDDIEFDMIGIDPALANAFRRILIA 120
DTIQY GAYAS+G+DNSL+LD FR NFKIEVIDL EDD+EFDMIGIDP+LANAFRRILIA
Sbjct: 342 DTIQYSGAYASLGIDNSLRLDSFRKNFKIEVIDLKEDDMEFDMIGIDPSLANAFRRILIA 401
Query: 121 EVPTMAIEKVLVANNTSIIQDEVLAHRLGLIPIHVDPRLFEYSDKDTPNEKNTIVFRLHA 180
EVPTMAIEKVLVANNTSI+QDEVLAHRLGLIPI VDPRLFEYSDKDTPNEKNTIVFRLH
Sbjct: 402 EVPTMAIEKVLVANNTSIVQDEVLAHRLGLIPIRVDPRLFEYSDKDTPNEKNTIVFRLHV 461
Query: 181 RCERGKPRLTVTSKALTWLPNGSEFPLVSDKSVPNSKPKTYTSFSCSQVALPEFSKNPIG 240
RCERGKPRLT TSKALTWLPNGSEFPLVSDKSV N+KPKTYTSFSCSQ LPEF+ NPIG
Sbjct: 462 RCERGKPRLTATSKALTWLPNGSEFPLVSDKSVSNTKPKTYTSFSCSQDTLPEFANNPIG 521
Query: 241 PKDSDIIIARLGPGQEIELEAHAVKGMGKTHAKWSPVATAWYRMLPEVVLLEEIEDELAE 300
PKD DII+ARL GQEIELEAHAVKGMGKTHAKWSPVATAWYRMLPEVVLLE+IEDELAE
Sbjct: 522 PKDGDIILARLSSGQEIELEAHAVKGMGKTHAKWSPVATAWYRMLPEVVLLEDIEDELAE 581
Query: 301 ELKSKCPVDVFDIEDIANGKKRATVARPRSCTLCRECIRGEAWEKRVSLRRVKNHFIFKI 360
ELK+KCPV+VFDIEDIANGKKRATVARPR+CTLCRECIRGEAWEKRVSLRRVK+HFIFKI
Sbjct: 582 ELKNKCPVNVFDIEDIANGKKRATVARPRACTLCRECIRGEAWEKRVSLRRVKDHFIFKI 641
Query: 361 ESTGALPPEVLFTEAIKILEDKCERLIAELS 391
ESTGALPPEVLFTEA+KILEDKCERLIAELS
Sbjct: 642 ESTGALPPEVLFTEAVKILEDKCERLIAELS 672
BLAST of MS017913 vs. ExPASy Swiss-Prot
Match:
Q32L22 (DNA-directed RNA polymerases I and III subunit RPAC1 OS=Bos taurus OX=9913 GN=POLR1C PE=2 SV=1)
HSP 1 Score: 295.4 bits (755), Expect = 9.2e-79
Identity = 169/363 (46.56%), Postives = 222/363 (61.16%), Query Frame = 0
Query: 42 LELHRTRVEFKADAPIHTDTIQYFGAYASMGVDNSLQLDYFRNNFKIEVIDLGEDDIEFD 101
+E RTRV + T + G Y+ G D++ D F NF+++V+ + E+ +EFD
Sbjct: 7 VEEMRTRVVLGEFGVRNVHTTDFPGNYS--GYDDAWDQDRFEKNFRVDVVHMDENSLEFD 66
Query: 102 MIGIDPALANAFRRILIAEVPTMAIEKVLVANNTSIIQDEVLAHRLGLIPIHVDPRLFEY 161
M+GID A+ANAFRRIL+AEVPTMA+EKVLV NNTSI+QDE+LAHRLGLIPIH DPRLFEY
Sbjct: 67 MVGIDAAIANAFRRILLAEVPTMAVEKVLVYNNTSIVQDEILAHRLGLIPIHADPRLFEY 126
Query: 162 SDK--DTPNEKNTIVFRLHARCERGKPRL-------------TVTSKALTWLPNGSEFPL 221
++ + E +T+ FRL RC R V ++ +TW+P G++ L
Sbjct: 127 RNQGDEGGTEIDTLQFRLQVRCTRNPHAAKDSSDPNELYVNHRVYTRHMTWVPLGNQADL 186
Query: 222 VSDKSVPNSKPKTYTSFSCSQVALPEFSKNPIGPKDSDIIIARLGPGQEIELEAHAVKGM 281
F + I P DI+IA+L PGQEI+L H VKG+
Sbjct: 187 --------------------------FPEGAIRPVHDDILIAQLRPGQEIDLLMHCVKGI 246
Query: 282 GKTHAKWSPVATAWYRMLPEVVLLEEIEDELAEELKSKCPVDVFDIEDIANGKKRATVAR 341
GK HAK+SPVATA YR+LP++ LLE +E E AEEL V ++++I GKK A VA
Sbjct: 247 GKDHAKFSPVATASYRLLPDITLLEPVEGEAAEELSRCFSPGVIEVQEI-QGKKVARVAN 306
Query: 342 PRSCTLCRECIRGEAWEKRVSLRRVKNHFIFKIESTGALPPEVLFTEAIKILEDKCERLI 390
PR T RE R E +K V L RV++HFIF +ESTG LPP+VL +EAIK+L KC+R +
Sbjct: 307 PRLDTFSREVFRNEKLKKVVRLARVRDHFIFSVESTGVLPPDVLVSEAIKVLMGKCQRFL 340
BLAST of MS017913 vs. ExPASy Swiss-Prot
Match:
O15160 (DNA-directed RNA polymerases I and III subunit RPAC1 OS=Homo sapiens OX=9606 GN=POLR1C PE=1 SV=1)
HSP 1 Score: 292.4 bits (747), Expect = 7.8e-78
Identity = 166/363 (45.73%), Postives = 221/363 (60.88%), Query Frame = 0
Query: 42 LELHRTRVEFKADAPIHTDTIQYFGAYASMGVDNSLQLDYFRNNFKIEVIDLGEDDIEFD 101
+E R+RV + T + G Y+ G D++ D F NF+++V+ + E+ +EFD
Sbjct: 7 VEEMRSRVVLGEFGVRNVHTTDFPGNYS--GYDDAWDQDRFEKNFRVDVVHMDENSLEFD 66
Query: 102 MIGIDPALANAFRRILIAEVPTMAIEKVLVANNTSIIQDEVLAHRLGLIPIHVDPRLFEY 161
M+GID A+ANAFRRIL+AEVPTMA+EKVLV NNTSI+QDE+LAHRLGLIPIH DPRLFEY
Sbjct: 67 MVGIDAAIANAFRRILLAEVPTMAVEKVLVYNNTSIVQDEILAHRLGLIPIHADPRLFEY 126
Query: 162 SDK--DTPNEKNTIVFRLHARCERGKPRL-------------TVTSKALTWLPNGSEFPL 221
++ + E +T+ FRL RC R V ++ +TW+P G++ L
Sbjct: 127 RNQGDEEGTEIDTLQFRLQVRCTRNPHAAKDSSDPNELYVNHKVYTRHMTWIPLGNQADL 186
Query: 222 VSDKSVPNSKPKTYTSFSCSQVALPEFSKNPIGPKDSDIIIARLGPGQEIELEAHAVKGM 281
F + I P DI+IA+L PGQEI+L H VKG+
Sbjct: 187 --------------------------FPEGTIRPVHDDILIAQLRPGQEIDLLMHCVKGI 246
Query: 282 GKTHAKWSPVATAWYRMLPEVVLLEEIEDELAEELKSKCPVDVFDIEDIANGKKRATVAR 341
GK HAK+SPVATA YR+LP++ LLE +E E AEEL V +++++ GKK A VA
Sbjct: 247 GKDHAKFSPVATASYRLLPDITLLEPVEGEAAEELSRCFSPGVIEVQEV-QGKKVARVAN 306
Query: 342 PRSCTLCRECIRGEAWEKRVSLRRVKNHFIFKIESTGALPPEVLFTEAIKILEDKCERLI 390
PR T RE R E +K V L RV++H+IF +ESTG LPP+VL +EAIK+L KC R +
Sbjct: 307 PRLDTFSREIFRNEKLKKVVRLARVRDHYIFSVESTGVLPPDVLVSEAIKVLMGKCRRFL 340
BLAST of MS017913 vs. ExPASy Swiss-Prot
Match:
P52432 (DNA-directed RNA polymerases I and III subunit RPAC1 OS=Mus musculus OX=10090 GN=Polr1c PE=1 SV=3)
HSP 1 Score: 288.9 bits (738), Expect = 8.7e-77
Identity = 169/356 (47.47%), Postives = 219/356 (61.52%), Query Frame = 0
Query: 42 LELHRTRVEFKADAPIHTDTIQYFGAYASMGVDNSLQLDYFRNNFKIEVIDLGEDDIEFD 101
+E RTRV + T + G YA G D++ + F NF+++V+ + ED +EFD
Sbjct: 7 VEEMRTRVVLGEFGVRNVHTTDFPGNYA--GYDDAWDQNRFEKNFRVDVVQMDEDTLEFD 66
Query: 102 MIGIDPALANAFRRILIAEVPTMAIEKVLVANNTSIIQDEVLAHRLGLIPIHVDPRLFEY 161
M+GID A+ANAFRRIL+AEVPTMA+EKVLV NNTSI+QDE+LAHRLGLIPI DPRLFEY
Sbjct: 67 MVGIDAAIANAFRRILLAEVPTMAVEKVLVYNNTSIVQDEILAHRLGLIPILADPRLFEY 126
Query: 162 SD--KDTPNEKNTIVFRLHARCERGKPRLTVTSKALTWLPNGSEFPLVSDKSVPNSKPKT 221
+ ++ E +T+ FRL RC R PN ++ D S PN
Sbjct: 127 RNQGEEEGTEIDTLQFRLQVRCTRN--------------PNAAK-----DSSDPNELYVN 186
Query: 222 YTSFSCSQVALP------EFSKNPIGPKDSDIIIARLGPGQEIELEAHAVKGMGKTHAKW 281
+ ++ +P F + I P DI+IA+L PGQEI+L H VKG+GK HAK+
Sbjct: 187 HKVYTRHMTWVPLGNQADVFPEGTIRPVHDDILIAQLRPGQEIDLMMHCVKGIGKDHAKF 246
Query: 282 SPVATAWYRMLPEVVLLEEIEDELAEELKSKCPVDVFDIEDIANGKKRATVARPRSCTLC 341
SPVATA YR+LP + LLE +E E AEEL V ++E++ GKK A VA R T
Sbjct: 247 SPVATASYRLLPAITLLEPVEGEAAEELSQCFSPGVIEVEEV-QGKKVARVANARLDTFS 306
Query: 342 RECIRGEAWEKRVSLRRVKNHFIFKIESTGALPPEVLFTEAIKILEDKCERLIAEL 390
RE R E +K V L RV++H+IF +ESTG LPP+VL +EAIKIL KC R + EL
Sbjct: 307 REIFRHEKLKKAVRLARVRDHYIFSVESTGVLPPDVLVSEAIKILMGKCRRFLDEL 340
BLAST of MS017913 vs. ExPASy Swiss-Prot
Match:
Q54SN4 (DNA-directed RNA polymerases I and III subunit rpac1 OS=Dictyostelium discoideum OX=44689 GN=polr1c PE=3 SV=1)
HSP 1 Score: 270.8 bits (691), Expect = 2.4e-71
Identity = 151/352 (42.90%), Postives = 209/352 (59.38%), Query Frame = 0
Query: 40 PHLELHRTRVEFKADAPIHTDTIQYFGAYASMGVDNSLQLDYFRNNFKIEVIDLGEDDIE 99
P+LE RT+V + Y GAY S+G DNS L+ F+ NFKI ++ +++
Sbjct: 13 PNLENKRTKVTLTNSGVENARGTYYSGAYTSVGYDNSFNLNRFKENFKINILSESANELV 72
Query: 100 FDMIGIDPALANAFRRILIAEVPTMAIEKVLVANNTSIIQDEVLAHRLGLIPIHVDPRLF 159
F+MIGID +ANA RRI+I+E+PTMAIEKV + NNTSI+QDEVLAHRLG+IPI VDPR F
Sbjct: 73 FEMIGIDAPIANALRRIMISEIPTMAIEKVYIINNTSILQDEVLAHRLGMIPIKVDPRKF 132
Query: 160 EYSDKDTPNE----KNTIVFRLHARCER----GK-PRLTVTSKALTWLPNGSEFPLVSDK 219
+ PN+ ++T++F+L +CE+ GK T SK L W+P + ++
Sbjct: 133 NFK---LPNKEYTAEDTLIFQLKVKCEKDSVTGKIINETALSKHLIWVPTQDQ-----EE 192
Query: 220 SVPNSKPKTYTSFSCSQVALPEFSKNPIGPKDSDIIIARLGPGQEIELEAHAVKGMGKTH 279
PN + + P + DI I +L PGQ I+++ + K +G+ H
Sbjct: 193 MFPNEEDRP-------------------RPMEDDIPIMKLRPGQVIDIQCYCEKNIGREH 252
Query: 280 AKWSPVATAWYRMLPEVVLLEEIEDELAEELKSKCPVDVFDIEDIANGKKRATVARPRSC 339
KWSPV TA YR+ P + + + I+ + A +L KCP VFDIED + ARP C
Sbjct: 253 IKWSPVCTASYRLQPVISVDKSIKGDKANQLLEKCPKKVFDIED----SGQVVAARPLDC 312
Query: 340 TLCRECIRGEAWEKRVSLRRVKNHFIFKIESTGALPPEVLFTEAIKILEDKC 383
T+CRECIR +E+ V + RV++HFIF IESTGAL +F EAIKI +KC
Sbjct: 313 TMCRECIRDPEFEQNVKIERVRDHFIFSIESTGALKSREIFQEAIKIFIEKC 333
BLAST of MS017913 vs. ExPASy Swiss-Prot
Match:
O94616 (DNA-directed RNA polymerases I and III subunit RPAC1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=rpc40 PE=1 SV=1)
HSP 1 Score: 250.0 bits (637), Expect = 4.5e-65
Identity = 140/356 (39.33%), Postives = 207/356 (58.15%), Query Frame = 0
Query: 46 RTRVEFKADAPIHTDTIQYFGAYASMGVDNSLQLDYFRNNFKIEVIDLGEDDIEFDMIGI 105
RT + +D ++ + G Y DN LD F+ N K+ + L ++ + F++ GI
Sbjct: 8 RTEISVLSDRVTDVGSVDFPGYY--FDEDNIWDLDKFKKNLKVSITSLDQETMVFEISGI 67
Query: 106 DPALANAFRRILIAEVPTMAIEKVLVANNTSIIQDEVLAHRLGLIPIHVDPRLFEYSDKD 165
D ++ANAFRRILIAE+PT+A E V + NNTSIIQDEVL+HR+GL+PI DP +F++
Sbjct: 68 DASIANAFRRILIAEIPTLAFEFVYIINNTSIIQDEVLSHRIGLVPISADPDMFKWFQHP 127
Query: 166 TPNEK------NTIVFRLHARCERGK---------PRLTVTSKA----LTWLPNGSEFPL 225
P ++ +T+VF L+ +CE K RL V S+ L W P G +
Sbjct: 128 LPGQEATHTDYDTVVFSLNKKCEFNKNAATDEKDPKRLYVNSEVYSGDLIWKPQGRQ--- 187
Query: 226 VSDKSVPNSKPKTYTSFSCSQVALPEFSKNPIGPKDSDIIIARLGPGQEIELEAHAVKGM 285
F+ NPI + DI++A+L PGQEI+LEAHA+ G+
Sbjct: 188 -----------------------EERFADNPIRVVNPDIVVAKLRPGQEIDLEAHAILGI 247
Query: 286 GKTHAKWSPVATAWYRMLPEVVLLEEIEDELAEELKSKCPVDVFDIEDIANGKKRATVAR 345
G+ HAK+SPVATA YR+LP + +L IE E A + + P V ++E+ +GKK+A VA
Sbjct: 248 GQDHAKFSPVATASYRLLPTIHILSPIEGEDAVKFQKCFPKGVIELEEGPDGKKQARVAD 307
Query: 346 PRSCTLCRECIRGEAWEKRVSLRRVKNHFIFKIESTGALPPEVLFTEAIKILEDKC 383
R T+ REC+R + +V L RV++H++F +ESTG + P+VLF ++I +L+ KC
Sbjct: 308 VRKDTVSRECLRHPEFADKVQLGRVRDHYLFSVESTGIMKPDVLFIKSIAVLKSKC 335
BLAST of MS017913 vs. ExPASy TrEMBL
Match:
A0A6J1DY99 (DNA-directed RNA polymerases I and III subunit RPAC1 OS=Momordica charantia OX=3673 GN=LOC111025323 PE=3 SV=1)
HSP 1 Score: 767.7 bits (1981), Expect = 2.3e-218
Identity = 381/390 (97.69%), Postives = 383/390 (98.21%), Query Frame = 0
Query: 1 MSAKDKRSRDISGSKFEQCVGKEGIEWIMNLPDVPMKLPPHLELHRTRVEFKADAPIHTD 60
MSAKDKRSRDI GSKFEQCVGKEGIEWIMNLPDVPMKLPPHLELHRTRVE KADAPIHTD
Sbjct: 1 MSAKDKRSRDILGSKFEQCVGKEGIEWIMNLPDVPMKLPPHLELHRTRVECKADAPIHTD 60
Query: 61 TIQYFGAYASMGVDNSLQLDYFRNNFKIEVIDLGEDDIEFDMIGIDPALANAFRRILIAE 120
TIQY GAYASMGVDNSLQLDYFRNNFKIEVIDLGEDDIEFDMIGIDPALANAFRR LIAE
Sbjct: 61 TIQYSGAYASMGVDNSLQLDYFRNNFKIEVIDLGEDDIEFDMIGIDPALANAFRRTLIAE 120
Query: 121 VPTMAIEKVLVANNTSIIQDEVLAHRLGLIPIHVDPRLFEYSDKDTPNEKNTIVFRLHAR 180
VPTMAIEKVLVANNTSIIQDEVLAHRLGL+PIHVDPRLFEYSD+DTPNEKNTIVFRLHAR
Sbjct: 121 VPTMAIEKVLVANNTSIIQDEVLAHRLGLVPIHVDPRLFEYSDEDTPNEKNTIVFRLHAR 180
Query: 181 CERGKPRLTVTSKALTWLPNGSEFPLVSDKSVPNSKPKTYTSFSCSQVALPEFSKNPIGP 240
CERGKPRLTVTSKALTWLPNGSEFPLVSDKSVPNSKPKTYTSFSCSQ ALPEFSKNPIGP
Sbjct: 181 CERGKPRLTVTSKALTWLPNGSEFPLVSDKSVPNSKPKTYTSFSCSQDALPEFSKNPIGP 240
Query: 241 KDSDIIIARLGPGQEIELEAHAVKGMGKTHAKWSPVATAWYRMLPEVVLLEEIEDELAEE 300
KDSDIIIARL PGQEIELEAHAVKGMGKTHAKWSPVATAWYRMLPEVVLLEEIEDELAEE
Sbjct: 241 KDSDIIIARLCPGQEIELEAHAVKGMGKTHAKWSPVATAWYRMLPEVVLLEEIEDELAEE 300
Query: 301 LKSKCPVDVFDIEDIANGKKRATVARPRSCTLCRECIRGEAWEKRVSLRRVKNHFIFKIE 360
LKSKCPVDVFDIEDIANGKKRATV RPRSCTLCRECIRGEAWEKRVSLRRVKNHFIFKIE
Sbjct: 301 LKSKCPVDVFDIEDIANGKKRATVTRPRSCTLCRECIRGEAWEKRVSLRRVKNHFIFKIE 360
Query: 361 STGALPPEVLFTEAIKILEDKCERLIAELS 391
STGALPPEVLFTEAIKILEDKCERLIAELS
Sbjct: 361 STGALPPEVLFTEAIKILEDKCERLIAELS 390
BLAST of MS017913 vs. ExPASy TrEMBL
Match:
A0A6J1DXI7 (DNA-directed RNA polymerases I and III subunit RPAC1 OS=Momordica charantia OX=3673 GN=LOC111025015 PE=3 SV=1)
HSP 1 Score: 721.5 bits (1861), Expect = 1.9e-204
Identity = 356/380 (93.68%), Postives = 365/380 (96.05%), Query Frame = 0
Query: 11 ISGSKFEQCVGKEGIEWIMNLPDVPMKLPPHLELHRTRVEFKADAPIHTDTIQYFGAYAS 70
+S S+ EQ GKEGIEWIMNLPDVPMKLPPHLE+ RTRVE KADAPIHTDTIQY GAYAS
Sbjct: 1 MSDSESEQVAGKEGIEWIMNLPDVPMKLPPHLEMQRTRVECKADAPIHTDTIQYSGAYAS 60
Query: 71 MGVDNSLQLDYFRNNFKIEVIDLGEDDIEFDMIGIDPALANAFRRILIAEVPTMAIEKVL 130
MGVDNSL+LDYFRNNFKIEVIDLGEDDIEFDMIGIDPALANAFRRILIAEVPTMAIEKVL
Sbjct: 61 MGVDNSLRLDYFRNNFKIEVIDLGEDDIEFDMIGIDPALANAFRRILIAEVPTMAIEKVL 120
Query: 131 VANNTSIIQDEVLAHRLGLIPIHVDPRLFEYSDKDTPNEKNTIVFRLHARCERGKPRLTV 190
VANNTS+IQDEVLAHRLGLIPIHVDPRLFEYSDKDTPNEKNTIVFRLHARCERGKPRLTV
Sbjct: 121 VANNTSLIQDEVLAHRLGLIPIHVDPRLFEYSDKDTPNEKNTIVFRLHARCERGKPRLTV 180
Query: 191 TSKALTWLPNGSEFPLVSDKSVPNSKPKTYTSFSCSQVALPEFSKNPIGPKDSDIIIARL 250
TSK LTWLPNGSEFPLVSDKSVPNSKPKTYTSFSCSQ LPEFS N IGPKD+DIIIARL
Sbjct: 181 TSKLLTWLPNGSEFPLVSDKSVPNSKPKTYTSFSCSQDTLPEFSNNSIGPKDNDIIIARL 240
Query: 251 GPGQEIELEAHAVKGMGKTHAKWSPVATAWYRMLPEVVLLEEIEDELAEELKSKCPVDVF 310
GPGQEIELEAHAVKGMGKTHAKWSPVATAWY+MLPEVVL EEIEDELAEELK KCPVDVF
Sbjct: 241 GPGQEIELEAHAVKGMGKTHAKWSPVATAWYKMLPEVVLSEEIEDELAEELKKKCPVDVF 300
Query: 311 DIEDIANGKKRATVARPRSCTLCRECIRGEAWEKRVSLRRVKNHFIFKIESTGALPPEVL 370
DIEDIANGKKRA VARPRSCTLCRECIRGEAWEKRVSLRRVK+HFIFKIESTGALPPEVL
Sbjct: 301 DIEDIANGKKRAIVARPRSCTLCRECIRGEAWEKRVSLRRVKDHFIFKIESTGALPPEVL 360
Query: 371 FTEAIKILEDKCERLIAELS 391
FTEA+KILEDKCERLIAELS
Sbjct: 361 FTEAVKILEDKCERLIAELS 380
BLAST of MS017913 vs. ExPASy TrEMBL
Match:
A0A6J1FDA3 (DNA-directed RNA polymerases I and III subunit RPAC1 OS=Cucurbita moschata OX=3662 GN=LOC111443051 PE=3 SV=1)
HSP 1 Score: 701.0 bits (1808), Expect = 2.7e-198
Identity = 348/391 (89.00%), Postives = 366/391 (93.61%), Query Frame = 0
Query: 1 MSAKDKRSRDISGSKFEQ-CVGKEGIEWIMNLPDVPMKLPPHLELHRTRVEFKADAPIHT 60
MS KDK ++S S EQ VGKEGIEWIMNLPDVPMKLPPH+EL RTRVE KADAPIHT
Sbjct: 1 MSGKDKNLHNMSESDSEQEDVGKEGIEWIMNLPDVPMKLPPHVELQRTRVECKADAPIHT 60
Query: 61 DTIQYFGAYASMGVDNSLQLDYFRNNFKIEVIDLGEDDIEFDMIGIDPALANAFRRILIA 120
DTIQY GAYAS+G+DNSL+LD FR NFKIEVIDL EDD+EFDMIGIDP+LANAFRRILIA
Sbjct: 61 DTIQYSGAYASLGIDNSLRLDSFRKNFKIEVIDLKEDDMEFDMIGIDPSLANAFRRILIA 120
Query: 121 EVPTMAIEKVLVANNTSIIQDEVLAHRLGLIPIHVDPRLFEYSDKDTPNEKNTIVFRLHA 180
EVPTMAIEKVLVANNTSI+QDEVLAHRLGLIPI VDPRLFEYSDKDTPNEKNTIVFRLH
Sbjct: 121 EVPTMAIEKVLVANNTSIVQDEVLAHRLGLIPIRVDPRLFEYSDKDTPNEKNTIVFRLHV 180
Query: 181 RCERGKPRLTVTSKALTWLPNGSEFPLVSDKSVPNSKPKTYTSFSCSQVALPEFSKNPIG 240
RCERGKPRLT TSKALTWLPNGSEFPLVSDKSV N+KPKTYTSFSCSQ LPEF+ NPIG
Sbjct: 181 RCERGKPRLTATSKALTWLPNGSEFPLVSDKSVSNTKPKTYTSFSCSQDTLPEFANNPIG 240
Query: 241 PKDSDIIIARLGPGQEIELEAHAVKGMGKTHAKWSPVATAWYRMLPEVVLLEEIEDELAE 300
PKD DII+ARL GQEIELEAHAVKGMGKTHAKWSPVATAWYRMLPEVVLLE+IEDELAE
Sbjct: 241 PKDGDIILARLSSGQEIELEAHAVKGMGKTHAKWSPVATAWYRMLPEVVLLEDIEDELAE 300
Query: 301 ELKSKCPVDVFDIEDIANGKKRATVARPRSCTLCRECIRGEAWEKRVSLRRVKNHFIFKI 360
ELK+KCPV+VFDIEDIANGKKRATVARPR+CTLCRECIRGEAWEKRVSLRRVK+HFIFKI
Sbjct: 301 ELKNKCPVNVFDIEDIANGKKRATVARPRACTLCRECIRGEAWEKRVSLRRVKDHFIFKI 360
Query: 361 ESTGALPPEVLFTEAIKILEDKCERLIAELS 391
ESTGALPPEVLFTEA+KILEDKCERLIAELS
Sbjct: 361 ESTGALPPEVLFTEAVKILEDKCERLIAELS 391
BLAST of MS017913 vs. ExPASy TrEMBL
Match:
A0A6J1L269 (DNA-directed RNA polymerases I and III subunit RPAC1 OS=Cucurbita maxima OX=3661 GN=LOC111498423 PE=3 SV=1)
HSP 1 Score: 699.9 bits (1805), Expect = 6.0e-198
Identity = 348/391 (89.00%), Postives = 365/391 (93.35%), Query Frame = 0
Query: 1 MSAKDKRSRDISGSKFEQ-CVGKEGIEWIMNLPDVPMKLPPHLELHRTRVEFKADAPIHT 60
MS +DK +S S EQ VGKEGIEWIMNLPDVPMKLPPH+EL RTRVE KADAPIHT
Sbjct: 1 MSGEDKNLHSMSESDSEQEDVGKEGIEWIMNLPDVPMKLPPHVELQRTRVECKADAPIHT 60
Query: 61 DTIQYFGAYASMGVDNSLQLDYFRNNFKIEVIDLGEDDIEFDMIGIDPALANAFRRILIA 120
DTIQY GAYAS+G+DNSL+LD FR NFKIEVIDL EDD+EFDMIGIDP+LANAFRRILIA
Sbjct: 61 DTIQYSGAYASLGIDNSLRLDSFRKNFKIEVIDLKEDDMEFDMIGIDPSLANAFRRILIA 120
Query: 121 EVPTMAIEKVLVANNTSIIQDEVLAHRLGLIPIHVDPRLFEYSDKDTPNEKNTIVFRLHA 180
EVPTMAIEKVLVANNTSI+QDEVLAHRLGLIPI VDPRLFEYSDKDTPNEKNTIVFRLH
Sbjct: 121 EVPTMAIEKVLVANNTSIVQDEVLAHRLGLIPIRVDPRLFEYSDKDTPNEKNTIVFRLHV 180
Query: 181 RCERGKPRLTVTSKALTWLPNGSEFPLVSDKSVPNSKPKTYTSFSCSQVALPEFSKNPIG 240
RCERGKPRLT TS+ALTWLPNGSEFPLVSDKSV NSKPKTYTSFSCSQ LPEF+ NPIG
Sbjct: 181 RCERGKPRLTATSEALTWLPNGSEFPLVSDKSVSNSKPKTYTSFSCSQDTLPEFANNPIG 240
Query: 241 PKDSDIIIARLGPGQEIELEAHAVKGMGKTHAKWSPVATAWYRMLPEVVLLEEIEDELAE 300
PKD DII+ARL GQEIELEAHAVKGMGKTHAKWSPVATAWYRMLPEVVLLEEIEDELAE
Sbjct: 241 PKDGDIILARLSSGQEIELEAHAVKGMGKTHAKWSPVATAWYRMLPEVVLLEEIEDELAE 300
Query: 301 ELKSKCPVDVFDIEDIANGKKRATVARPRSCTLCRECIRGEAWEKRVSLRRVKNHFIFKI 360
ELK+KCPV+VFDIEDIANGKKRATVARPR+CTLCRECIRGEAWEKRVSLRRVK+HFIFKI
Sbjct: 301 ELKNKCPVNVFDIEDIANGKKRATVARPRACTLCRECIRGEAWEKRVSLRRVKDHFIFKI 360
Query: 361 ESTGALPPEVLFTEAIKILEDKCERLIAELS 391
ESTGALPPEVLFTEA+KILEDKCERLIAELS
Sbjct: 361 ESTGALPPEVLFTEAVKILEDKCERLIAELS 391
BLAST of MS017913 vs. ExPASy TrEMBL
Match:
A0A0A0L637 (DNA-directed RNA polymerases I and III subunit RPAC1 OS=Cucumis sativus OX=3659 GN=Csa_3G047880 PE=3 SV=1)
HSP 1 Score: 683.3 bits (1762), Expect = 5.8e-193
Identity = 345/392 (88.01%), Postives = 363/392 (92.60%), Query Frame = 0
Query: 1 MSAKDKRSRDISGSKFEQ-CVGKEGIEWIMNLPDVPMKLPPHLELHRTRVEFKADAPIHT 60
MS KDK ++S S+ EQ V KEGIEWIMNLPDVPMKLPPH+EL RTRVE KADAPIHT
Sbjct: 1 MSGKDKNLHNMSESESEQEGVDKEGIEWIMNLPDVPMKLPPHVELQRTRVECKADAPIHT 60
Query: 61 DTIQYFGAYASMGVDNSLQLDYFRNNFKIEVIDLGEDDIEFDMIGIDPALANAFRRILIA 120
DTIQY GA+ASMG DNSL+LD FRNNFKIEVIDL EDDIEFDMIGIDPALANAFRRILI+
Sbjct: 61 DTIQYSGAFASMGFDNSLRLDNFRNNFKIEVIDLKEDDIEFDMIGIDPALANAFRRILIS 120
Query: 121 EVPTMAIEKVLVANNTSIIQDEVLAHRLGLIPIHVDPRLFEYSDKDTPNEKNTIVFRLHA 180
EVPTMAIEKVL ANNTSI+QDEVLAHRLGL+PI VDPRLF+YSDKD PNE NTIVFRLHA
Sbjct: 121 EVPTMAIEKVLFANNTSIVQDEVLAHRLGLVPIRVDPRLFKYSDKDAPNENNTIVFRLHA 180
Query: 181 RCERGKPRLTVTSKALTWLPNGSEFPLVSDKSVPNSKPKTYTSFSCSQVAL-PEFSKNPI 240
CERGKPRLTVTSKALTWLPNGSEFPLVSDKSV NSKPKTYTSFSCSQ L EFS NPI
Sbjct: 181 CCERGKPRLTVTSKALTWLPNGSEFPLVSDKSVSNSKPKTYTSFSCSQNTLSKEFSNNPI 240
Query: 241 GPKDSDIIIARLGPGQEIELEAHAVKGMGKTHAKWSPVATAWYRMLPEVVLLEEIEDELA 300
GPKDSDII+ARLGPGQEIELEAHAVKGMGKTHAKWSPVATAWYRMLPEVVL+EEIEDELA
Sbjct: 241 GPKDSDIILARLGPGQEIELEAHAVKGMGKTHAKWSPVATAWYRMLPEVVLMEEIEDELA 300
Query: 301 EELKSKCPVDVFDIEDIANGKKRATVARPRSCTLCRECIRGEAWEKRVSLRRVKNHFIFK 360
EEL+ KCPV+VFDIEDIA GKKRATVARPR CTLCRECIRG+AWEKRV+LRRVK+HFIFK
Sbjct: 301 EELEKKCPVNVFDIEDIA-GKKRATVARPRDCTLCRECIRGDAWEKRVALRRVKDHFIFK 360
Query: 361 IESTGALPPEVLFTEAIKILEDKCERLIAELS 391
IESTGALPPEVLFTEA+KILEDKCERLIAELS
Sbjct: 361 IESTGALPPEVLFTEAVKILEDKCERLIAELS 391
BLAST of MS017913 vs. TAIR 10
Match:
AT1G60620.1 (RNA polymerase I subunit 43 )
HSP 1 Score: 498.0 bits (1281), Expect = 6.7e-141
Identity = 250/365 (68.49%), Postives = 292/365 (80.00%), Query Frame = 0
Query: 28 IMNLPDVPMKLPPHLELHRTRVEFKADAPIHTDTIQYFGAYASMGVDNSLQLDYFRNNFK 87
I +LPDVP LPPHLEL RTRV K D+ IH I + GAY+SMGVDNS++L+ F +FK
Sbjct: 23 IFDLPDVPTGLPPHLELQRTRVVCKKDSNIHPTAITFSGAYSSMGVDNSVRLENFSEDFK 82
Query: 88 IEVIDLGEDDIEFDMIGIDPALANAFRRILIAEVPTMAIEKVLVANNTSIIQDEVLAHRL 147
++VI L E D+ FDMIG+ +ANAFRRIL+AE+P+MAIEKV VANNTS+IQDEVLAHRL
Sbjct: 83 VDVISLTETDMVFDMIGVHAGIANAFRRILLAELPSMAIEKVYVANNTSVIQDEVLAHRL 142
Query: 148 GLIPIHVDPRLFEY-SDKDTPNEKNTIVFRLHARCERGKPRLTVTSKALTWLPNGSEFPL 207
GLIPI DPRLFEY S+ D PNEKNTIVF+LH +C +G PR V + L WLPNGSE L
Sbjct: 143 GLIPIAADPRLFEYLSENDQPNEKNTIVFKLHVKCLKGDPRRKVLTSELKWLPNGSE--L 202
Query: 208 VSDKSVPNSKPKTYTSFSCSQVALPEFSKNPIGPKDSDIIIARLGPGQEIELEAHAVKGM 267
+ + + PKTYTSF+ SQ + PEF++NPI P DI+IA+LGPGQEIELEAHAVKG+
Sbjct: 203 IKESGGSTTTPKTYTSFNHSQDSFPEFAENPIRPTLKDILIAKLGPGQEIELEAHAVKGI 262
Query: 268 GKTHAKWSPVATAWYRMLPEVVLLEEIEDELAEELKSKCPVDVFDIEDIANGKKRATVAR 327
GKTHAKWSPVATAWYRMLPEVVLL+E E + AEEL CP VFDIED+ G+KRATVAR
Sbjct: 263 GKTHAKWSPVATAWYRMLPEVVLLKEFEGKHAEELVKVCPKKVFDIEDMGQGRKRATVAR 322
Query: 328 PRSCTLCRECIR-GEAWEKRVSLRRVKNHFIFKIESTGALPPEVLFTEAIKILEDKCERL 387
PR C+LCRECIR G WE +V LRRVKNHFIF IESTG+ PPEVLF EA+KILEDKCER+
Sbjct: 323 PRDCSLCRECIRDGVEWEDQVDLRRVKNHFIFTIESTGSQPPEVLFNEAVKILEDKCERV 382
Query: 388 IAELS 391
I+ELS
Sbjct: 383 ISELS 385
BLAST of MS017913 vs. TAIR 10
Match:
AT1G60850.2 (DNA-directed RNA polymerase family protein )
HSP 1 Score: 468.0 bits (1203), Expect = 7.4e-132
Identity = 237/360 (65.83%), Postives = 281/360 (78.06%), Query Frame = 0
Query: 28 IMNLPDVPMKLPPHLELHRTRVEFKADAPIHTDTIQYFGAY-ASMGVDNSLQLDYFRNNF 87
I +LPDVP LPPHL+ +TRV K +AP HT + Y G Y +S D++++L F +NF
Sbjct: 15 IDDLPDVPAGLPPHLKAQQTRVVSKNNAPAHTASAIYSGTYVSSTEEDDNVKLGNFYDNF 74
Query: 88 KIEVIDLGEDDIEFDMIGIDPALANAFRRILIAEVPTMAIEKVLVANNTSIIQDEVLAHR 147
K++V+ L + D+EFDMIGID A ANAFRRILIAEVP+MAIEKVL+A NTS+I DEVLAHR
Sbjct: 75 KVDVVSLTKTDMEFDMIGIDAAFANAFRRILIAEVPSMAIEKVLIAYNTSVIIDEVLAHR 134
Query: 148 LGLIPIHVDPRLFEY-SDKDTPNEKNTIVFRLHARCERGKPRLTVTSKALTWLPNGSEFP 207
+GLIPI DPRLFEY S+ D NEKNTIVF+LH +C + +PRL V + L WLPNGSE
Sbjct: 135 MGLIPIAADPRLFEYLSEHDQANEKNTIVFKLHVKCPKNRPRLKVLTSDLKWLPNGSE-- 194
Query: 208 LVSDKSVPNSKPKTYTSFSCSQVALPEFSKNPIGPKDSDIIIARLGPGQEIELEAHAVKG 267
L+ + SKPKTYTSFSCSQ +LPEF+ NPI P D DI+IA+L PGQEIELEAHAVKG
Sbjct: 195 LLRESENKTSKPKTYTSFSCSQDSLPEFANNPITPCDLDILIAKLAPGQEIELEAHAVKG 254
Query: 268 MGKTHAKWSPVATAWYRMLPEVVLLEEIEDELAEELKSKCPVDVFDIEDIANGKKRATVA 327
+GKTHAKWSPV TAWYRM PEVVL E+EDELAE L + CP +VFDIED+ GKKRATVA
Sbjct: 255 IGKTHAKWSPVGTAWYRMHPEVVLRGEVEDELAERLVNVCPQNVFDIEDMGKGKKRATVA 314
Query: 328 RPRSCTLCRECIRGEAWEKRVSLRRVKNHFIFKIESTGALPPEVLFTEAIKILEDKCERL 386
+PR CTLC+EC+R + V L VKNHFIF IESTG+LPPEVLFTEA+KILE KCE +
Sbjct: 315 QPRKCTLCKECVRDDDLVDHVDLGSVKNHFIFNIESTGSLPPEVLFTEAVKILEAKCEAI 372
BLAST of MS017913 vs. TAIR 10
Match:
AT1G60850.1 (DNA-directed RNA polymerase family protein )
HSP 1 Score: 468.0 bits (1203), Expect = 7.4e-132
Identity = 237/360 (65.83%), Postives = 281/360 (78.06%), Query Frame = 0
Query: 28 IMNLPDVPMKLPPHLELHRTRVEFKADAPIHTDTIQYFGAY-ASMGVDNSLQLDYFRNNF 87
I +LPDVP LPPHL+ +TRV K +AP HT + Y G Y +S D++++L F +NF
Sbjct: 15 IDDLPDVPAGLPPHLKAQQTRVVSKNNAPAHTASAIYSGTYVSSTEEDDNVKLGNFYDNF 74
Query: 88 KIEVIDLGEDDIEFDMIGIDPALANAFRRILIAEVPTMAIEKVLVANNTSIIQDEVLAHR 147
K++V+ L + D+EFDMIGID A ANAFRRILIAEVP+MAIEKVL+A NTS+I DEVLAHR
Sbjct: 75 KVDVVSLTKTDMEFDMIGIDAAFANAFRRILIAEVPSMAIEKVLIAYNTSVIIDEVLAHR 134
Query: 148 LGLIPIHVDPRLFEY-SDKDTPNEKNTIVFRLHARCERGKPRLTVTSKALTWLPNGSEFP 207
+GLIPI DPRLFEY S+ D NEKNTIVF+LH +C + +PRL V + L WLPNGSE
Sbjct: 135 MGLIPIAADPRLFEYLSEHDQANEKNTIVFKLHVKCPKNRPRLKVLTSDLKWLPNGSE-- 194
Query: 208 LVSDKSVPNSKPKTYTSFSCSQVALPEFSKNPIGPKDSDIIIARLGPGQEIELEAHAVKG 267
L+ + SKPKTYTSFSCSQ +LPEF+ NPI P D DI+IA+L PGQEIELEAHAVKG
Sbjct: 195 LLRESENKTSKPKTYTSFSCSQDSLPEFANNPITPCDLDILIAKLAPGQEIELEAHAVKG 254
Query: 268 MGKTHAKWSPVATAWYRMLPEVVLLEEIEDELAEELKSKCPVDVFDIEDIANGKKRATVA 327
+GKTHAKWSPV TAWYRM PEVVL E+EDELAE L + CP +VFDIED+ GKKRATVA
Sbjct: 255 IGKTHAKWSPVGTAWYRMHPEVVLRGEVEDELAERLVNVCPQNVFDIEDMGKGKKRATVA 314
Query: 328 RPRSCTLCRECIRGEAWEKRVSLRRVKNHFIFKIESTGALPPEVLFTEAIKILEDKCERL 386
+PR CTLC+EC+R + V L VKNHFIF IESTG+LPPEVLFTEA+KILE KCE +
Sbjct: 315 QPRKCTLCKECVRDDDLVDHVDLGSVKNHFIFNIESTGSLPPEVLFTEAVKILEAKCEAI 372
BLAST of MS017913 vs. TAIR 10
Match:
AT1G60850.3 (DNA-directed RNA polymerase family protein )
HSP 1 Score: 335.5 bits (859), Expect = 5.7e-92
Identity = 171/262 (65.27%), Postives = 204/262 (77.86%), Query Frame = 0
Query: 28 IMNLPDVPMKLPPHLELHRTRVEFKADAPIHTDTIQYFGAY-ASMGVDNSLQLDYFRNNF 87
I +LPDVP LPPHL+ +TRV K +AP HT + Y G Y +S D++++L F +NF
Sbjct: 15 IDDLPDVPAGLPPHLKAQQTRVVSKNNAPAHTASAIYSGTYVSSTEEDDNVKLGNFYDNF 74
Query: 88 KIEVIDLGEDDIEFDMIGIDPALANAFRRILIAEVPTMAIEKVLVANNTSIIQDEVLAHR 147
K++V+ L + D+EFDMIGID A ANAFRRILIAEVP+MAIEKVL+A NTS+I DEVLAHR
Sbjct: 75 KVDVVSLTKTDMEFDMIGIDAAFANAFRRILIAEVPSMAIEKVLIAYNTSVIIDEVLAHR 134
Query: 148 LGLIPIHVDPRLFEY-SDKDTPNEKNTIVFRLHARCERGKPRLTVTSKALTWLPNGSEFP 207
+GLIPI DPRLFEY S+ D NEKNTIVF+LH +C + +PRL V + L WLPNGSE
Sbjct: 135 MGLIPIAADPRLFEYLSEHDQANEKNTIVFKLHVKCPKNRPRLKVLTSDLKWLPNGSE-- 194
Query: 208 LVSDKSVPNSKPKTYTSFSCSQVALPEFSKNPIGPKDSDIIIARLGPGQEIELEAHAVKG 267
L+ + SKPKTYTSFSCSQ +LPEF+ NPI P D DI+IA+L PGQEIELEAHAVKG
Sbjct: 195 LLRESENKTSKPKTYTSFSCSQDSLPEFANNPITPCDLDILIAKLAPGQEIELEAHAVKG 254
Query: 268 MGKTHAKWSPVATAWYRMLPEV 288
+GKTHAKWSPV TAWYRM PEV
Sbjct: 255 IGKTHAKWSPVGTAWYRMHPEV 274
BLAST of MS017913 vs. TAIR 10
Match:
AT2G15430.1 (DNA-directed RNA polymerase family protein )
HSP 1 Score: 137.1 bits (344), Expect = 3.0e-32
Identity = 101/312 (32.37%), Postives = 161/312 (51.60%), Query Frame = 0
Query: 87 KIEVIDLGEDDIEFDMIGIDPALANAFRRILIAEVPTMAIEKVLVANNTSIIQDEVLAHR 146
KI++ +L +D +F++ D ++ANA RR++I+EVPT+AI+ V + N+S++ DE +AHR
Sbjct: 11 KIKIRELKDDYAKFELRETDVSMANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAHR 70
Query: 147 LGLIPIHVD-------PRLFEYSDKDTPNEKNTIVFRLHARCERGKPRLTVTSKAL-TWL 206
LGLIP+ + R + D D E ++ FRL ++C + L VTS+ L +
Sbjct: 71 LGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFRLSSKCVTDQ-TLDVTSRDLYSAD 130
Query: 207 PNGSEFPLVSDKSVPNSKPKTYTSFSCSQVALPEFSKNPIGPKDSDIIIARLGPGQEIEL 266
P + D SV +S + III +L GQE++L
Sbjct: 131 PTVTPVDFTIDSSVSDSS------------------------EHKGIIIVKLRRGQELKL 190
Query: 267 EAHAVKGMGKTHAKWSPVATAWYRMLPEVVLLEEIEDELAEELK----SKCPVDVFDIED 326
A A KG+GK HAKWSP AT + P++++ E++ D L++E K P VF ++
Sbjct: 191 RAIARKGIGKDHAKWSPAATVTFMYEPDIIINEDMMDTLSDEEKIDLIESSPTKVFGMDP 250
Query: 327 IANGKKRATVARPRSCTLCRECI-RGEAWEK--RVSLRRVKNHFIFKIESTGALPPEVLF 384
+ ++ V P + T E I + EA K + + + FIF +ESTGA+ L
Sbjct: 251 VT---RQVVVVDPEAYTYDEEVIKKAEAMGKPGLIEISPKDDSFIFTVESTGAVKASQLV 294
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
XP_022158862.1 | 4.8e-218 | 97.69 | LOW QUALITY PROTEIN: DNA-directed RNA polymerases I and III subunit RPAC1-like [... | [more] |
XP_022158557.1 | 4.0e-204 | 93.68 | DNA-directed RNA polymerases I and III subunit RPAC1-like isoform X1 [Momordica ... | [more] |
XP_038903474.1 | 1.7e-199 | 90.54 | DNA-directed RNA polymerases I and III subunit RPAC1 isoform X1 [Benincasa hispi... | [more] |
KAG7028290.1 | 1.5e-198 | 88.97 | DNA-directed RNA polymerases I and III subunit RPAC1 [Cucurbita argyrosperma sub... | [more] |
KAG6596753.1 | 5.6e-198 | 89.00 | DNA-directed RNA polymerases I and III subunit RPAC1, partial [Cucurbita argyros... | [more] |
Match Name | E-value | Identity | Description | |
Q32L22 | 9.2e-79 | 46.56 | DNA-directed RNA polymerases I and III subunit RPAC1 OS=Bos taurus OX=9913 GN=PO... | [more] |
O15160 | 7.8e-78 | 45.73 | DNA-directed RNA polymerases I and III subunit RPAC1 OS=Homo sapiens OX=9606 GN=... | [more] |
P52432 | 8.7e-77 | 47.47 | DNA-directed RNA polymerases I and III subunit RPAC1 OS=Mus musculus OX=10090 GN... | [more] |
Q54SN4 | 2.4e-71 | 42.90 | DNA-directed RNA polymerases I and III subunit rpac1 OS=Dictyostelium discoideum... | [more] |
O94616 | 4.5e-65 | 39.33 | DNA-directed RNA polymerases I and III subunit RPAC1 OS=Schizosaccharomyces pomb... | [more] |
Match Name | E-value | Identity | Description | |
A0A6J1DY99 | 2.3e-218 | 97.69 | DNA-directed RNA polymerases I and III subunit RPAC1 OS=Momordica charantia OX=3... | [more] |
A0A6J1DXI7 | 1.9e-204 | 93.68 | DNA-directed RNA polymerases I and III subunit RPAC1 OS=Momordica charantia OX=3... | [more] |
A0A6J1FDA3 | 2.7e-198 | 89.00 | DNA-directed RNA polymerases I and III subunit RPAC1 OS=Cucurbita moschata OX=36... | [more] |
A0A6J1L269 | 6.0e-198 | 89.00 | DNA-directed RNA polymerases I and III subunit RPAC1 OS=Cucurbita maxima OX=3661... | [more] |
A0A0A0L637 | 5.8e-193 | 88.01 | DNA-directed RNA polymerases I and III subunit RPAC1 OS=Cucumis sativus OX=3659 ... | [more] |