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MS017859 (gene) Bitter gourd (TR) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGGCGTATGCTGCGATGAAGACTACGAAGCCTGGTTTGGAGGAGTCACAGGAGCAGATCCACAAGATTAGGATCACTCTTTCGTCCAAGAACGTCAAGAACCTTGAGAAGGGTAACTCCTTACCTCTGTTTAGAACCAAGTCGCATTGGTTATTCCATAGTGTGCAAGTAGATTATATATCTTCTCCGGATCTCATGGTTTGAAGTTATTGACGAGGCTCGTTTATCTGTTGGCTTTACGTTTTTGTAATGTGTTTCTGAAATATATGGGTTCTTCACATTCGCGCTATTGTTCTTGTAGTTGTTGGTAATTCGTTGGCTTTTCACCTTTTATATTCCACTTGTTTGTAACATTATAATTATTGAATTGTTATTCATATCGTGGCCTTCGATTTCATGTTGCTGCTCTGGGCGAGTCTTCAATGATAGGGTTGAGCCTCTTCGGGTTTTAGGATATGTTTGTACAAATAATTGAGATTTGATTTCTTGATGTGTTCAGTTTTGTGAATGTTATCGCAATCCTCACTTTTAGTGGGTTCACTCCATTTTTTAATCGTCAGTTTGTACCGATTTGGTTCGGGGAGCCAAGGACAAGAGACTGAGGGTTAAAGGGCCTGTGAGGATGCCAACAAAAGTCCTGCACATTACCACCAGGAAGTCTCCCTGTGGCGAAGGTAATTTTGATTCAATGCTGAACTTGAGAATAATCGTGAACTGATCAACTAACTTATAAAACATTTGTATGTATGTAGTTAAATTTGTATCCTTAATTTGGAATCTTCTTGATCTTTGTTACCTCTGGATCAAGCACTCACCTGTACTTCTCCCCCATATCTCTCGTTCCATCTGCCATTTATCATTTTCTGGGATTGGCTGGTGATGTTAGTTAAATATTCATTCGTCATGATATCTGGAGTTTCACACCATGTGTTATAGTGTGGTAGTCCTGCTTCTCCCTCTCCTCGCTCCATGTGTACAGTGCCGTTAGACCTGTTATTGTTTTTCGTACTCAAACTTTGGTGGCGCAAGTTATGATGATTCAGACACTGCATTGAAATAGAATCATTAATTGACCTTGCAACTATAGAAAATAAGCCAAAATTTTTTATGAATGTGAGATCTGTAAGTTATTTGGGATTATGCTGTGACGAGTTTTACAAACTTTTGAGTTTATTATTATGTCTTATGTGAAGTAAGAATCTTGTCTTACATTGGATATGACACCATTTTAAGTTTATTATTCCATCTTTCGGGTCAAGGGGAGATTTTTGTGGCAGACATGTTTCTATTTTGTGTGGGGATTTGAATTGAGCGAAATAATAGAATCTTTAGAGGTAGAGAGATCCATGGAGTATTTTGGGAGATTATTAGATTTAATACTTCCCTTTGGATTGGTTTCTAAGTTTTTTTTTTTTTAATAATTACCAGCGAGGTGTTATCCTTTTGGTTTAGAGTCCCTTTCTATCGATGGGCCTCTTCTATTTGGGTAGTTTTTTTTGTATGCCCTTTTTTTTGCCTCTTTTGTTGACGATGTCTAACACAAGTTGTGGTATTCTTTTACTAAGGAAGCCAAGTTACCTTTTAGATCCAGCCTGAAAACTGGTTGCCAATCTTTTACTATTGTTGCAGGTACCAACACATGGGACAGATTTGAACTTCGTGTCCACAAGCGGGTCATCGACCTCTTTAGCTCAGCTGATGTTGTTAAGCAGATTACATCTATCACCATTGAACCAGGTGTTGAGGTTGAAGTCACAATTGCAGAT ATGGCGTATGCTGCGATGAAGACTACGAAGCCTGGTTTGGAGGAGTCACAGGAGCAGATCCACAAGATTAGGATCACTCTTTCGTCCAAGAACGTCAAGAACCTTGAGAAGGTTTGTACCGATTTGGTTCGGGGAGCCAAGGACAAGAGACTGAGGGTTAAAGGGCCTGTGAGGATGCCAACAAAAGTCCTGCACATTACCACCAGGAAGTCTCCCTGTGGCGAAGGTACCAACACATGGGACAGATTTGAACTTCGTGTCCACAAGCGGGTCATCGACCTCTTTAGCTCAGCTGATGTTGTTAAGCAGATTACATCTATCACCATTGAACCAGGTGTTGAGGTTGAAGTCACAATTGCAGAT ATGGCGTATGCTGCGATGAAGACTACGAAGCCTGGTTTGGAGGAGTCACAGGAGCAGATCCACAAGATTAGGATCACTCTTTCGTCCAAGAACGTCAAGAACCTTGAGAAGGTTTGTACCGATTTGGTTCGGGGAGCCAAGGACAAGAGACTGAGGGTTAAAGGGCCTGTGAGGATGCCAACAAAAGTCCTGCACATTACCACCAGGAAGTCTCCCTGTGGCGAAGGTACCAACACATGGGACAGATTTGAACTTCGTGTCCACAAGCGGGTCATCGACCTCTTTAGCTCAGCTGATGTTGTTAAGCAGATTACATCTATCACCATTGAACCAGGTGTTGAGGTTGAAGTCACAATTGCAGAT MAYAAMKTTKPGLEESQEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIAD Homology
BLAST of MS017859 vs. NCBI nr
Match: XP_022159765.1 (40S ribosomal protein S20-2 [Momordica charantia] >XP_022159766.1 40S ribosomal protein S20-2 [Momordica charantia]) HSP 1 Score: 238.8 bits (608), Expect = 2.4e-59 Identity = 121/121 (100.00%), Postives = 121/121 (100.00%), Query Frame = 0
BLAST of MS017859 vs. NCBI nr
Match: XP_015878354.1 (40S ribosomal protein S20-2 [Ziziphus jujuba] >XP_015878355.1 40S ribosomal protein S20-2 [Ziziphus jujuba]) HSP 1 Score: 235.0 bits (598), Expect = 3.5e-58 Identity = 119/121 (98.35%), Postives = 119/121 (98.35%), Query Frame = 0
BLAST of MS017859 vs. NCBI nr
Match: XP_006421732.1 (40S ribosomal protein S20-2 [Citrus clementina] >XP_006495151.1 40S ribosomal protein S20-2 [Citrus sinensis] >GAY41358.1 hypothetical protein CUMW_058860 [Citrus unshiu] >ESR34972.1 hypothetical protein CICLE_v10006225mg [Citrus clementina] >ESR34973.1 hypothetical protein CICLE_v10006225mg [Citrus clementina] >GAY41359.1 hypothetical protein CUMW_058860 [Citrus unshiu]) HSP 1 Score: 233.4 bits (594), Expect = 1.0e-57 Identity = 118/121 (97.52%), Postives = 119/121 (98.35%), Query Frame = 0
BLAST of MS017859 vs. NCBI nr
Match: XP_011086523.1 (40S ribosomal protein S20-2-like [Sesamum indicum] >XP_012488472.1 PREDICTED: 40S ribosomal protein S20-2-like [Gossypium raimondii] >XP_016686565.1 40S ribosomal protein S20-2 [Gossypium hirsutum] >XP_038683410.1 40S ribosomal protein S20-2 [Tripterygium wilfordii] >XP_038708346.1 40S ribosomal protein S20-2 [Tripterygium wilfordii] >XP_039060993.1 40S ribosomal protein S20-2-like [Hibiscus syriacus] >KAA3476004.1 40S ribosomal protein S20-2 [Gossypium australe] >KAB2001625.1 hypothetical protein ES319_D11G006400v1 [Gossypium barbadense] >KAF5959805.1 hypothetical protein HYC85_001014 [Camellia sinensis] >MBA0559327.1 hypothetical protein [Gossypium lobatum] >MBA0616680.1 hypothetical protein [Gossypium davidsonii] >MBA0714244.1 hypothetical protein [Gossypium laxum] >MBA0801619.1 hypothetical protein [Gossypium harknessii] >MBA0831067.1 hypothetical protein [Gossypium armourianum] >MBA0859408.1 hypothetical protein [Gossypium schwendimanii] >TYG43335.1 hypothetical protein ES288_D11G008100v1 [Gossypium darwinii] >TYH41648.1 hypothetical protein ES332_D11G007700v1 [Gossypium tomentosum] >TYI53487.1 hypothetical protein E1A91_D11G007600v1 [Gossypium mustelinum]) HSP 1 Score: 232.6 bits (592), Expect = 1.7e-57 Identity = 118/121 (97.52%), Postives = 118/121 (97.52%), Query Frame = 0
BLAST of MS017859 vs. NCBI nr
Match: XP_010108442.1 (40S ribosomal protein S20-2 [Morus notabilis] >XP_010108443.1 40S ribosomal protein S20-2 [Morus notabilis] >EXC19483.1 40S ribosomal protein S20-2 [Morus notabilis] >EXC19484.1 40S ribosomal protein S20-2 [Morus notabilis]) HSP 1 Score: 232.6 bits (592), Expect = 1.7e-57 Identity = 118/121 (97.52%), Postives = 118/121 (97.52%), Query Frame = 0
BLAST of MS017859 vs. ExPASy Swiss-Prot
Match: Q9STY6 (40S ribosomal protein S20-2 OS=Arabidopsis thaliana OX=3702 GN=RPS20B PE=2 SV=1) HSP 1 Score: 216.1 bits (549), Expect = 2.2e-55 Identity = 111/121 (91.74%), Postives = 112/121 (92.56%), Query Frame = 0
BLAST of MS017859 vs. ExPASy Swiss-Prot
Match: P49200 (40S ribosomal protein S20-1 OS=Arabidopsis thaliana OX=3702 GN=RPS20A PE=2 SV=2) HSP 1 Score: 213.8 bits (543), Expect = 1.1e-54 Identity = 110/120 (91.67%), Postives = 111/120 (92.50%), Query Frame = 0
BLAST of MS017859 vs. ExPASy Swiss-Prot
Match: P35686 (40S ribosomal protein S20 OS=Oryza sativa subsp. japonica OX=39947 GN=RPS20 PE=2 SV=2) HSP 1 Score: 198.7 bits (504), Expect = 3.7e-50 Identity = 103/122 (84.43%), Postives = 111/122 (90.98%), Query Frame = 0
BLAST of MS017859 vs. ExPASy Swiss-Prot
Match: Q3ZBH8 (40S ribosomal protein S20 OS=Bos taurus OX=9913 GN=RPS20 PE=3 SV=1) HSP 1 Score: 169.9 bits (429), Expect = 1.8e-41 Identity = 82/117 (70.09%), Postives = 100/117 (85.47%), Query Frame = 0
BLAST of MS017859 vs. ExPASy Swiss-Prot
Match: P60866 (40S ribosomal protein S20 OS=Homo sapiens OX=9606 GN=RPS20 PE=1 SV=1) HSP 1 Score: 169.9 bits (429), Expect = 1.8e-41 Identity = 82/117 (70.09%), Postives = 100/117 (85.47%), Query Frame = 0
BLAST of MS017859 vs. ExPASy TrEMBL
Match: A0A6J1DZP4 (40S ribosomal protein S20-2 OS=Momordica charantia OX=3673 GN=LOC111026092 PE=3 SV=1) HSP 1 Score: 238.8 bits (608), Expect = 1.2e-59 Identity = 121/121 (100.00%), Postives = 121/121 (100.00%), Query Frame = 0
BLAST of MS017859 vs. ExPASy TrEMBL
Match: A0A6P3ZG25 (40S ribosomal protein S20-2 OS=Ziziphus jujuba OX=326968 GN=LOC107414707 PE=3 SV=1) HSP 1 Score: 235.0 bits (598), Expect = 1.7e-58 Identity = 119/121 (98.35%), Postives = 119/121 (98.35%), Query Frame = 0
BLAST of MS017859 vs. ExPASy TrEMBL
Match: A0A2H5NMF8 (Ribosomal_S10 domain-containing protein OS=Citrus unshiu OX=55188 GN=CUMW_058860 PE=3 SV=1) HSP 1 Score: 233.4 bits (594), Expect = 4.9e-58 Identity = 118/121 (97.52%), Postives = 119/121 (98.35%), Query Frame = 0
BLAST of MS017859 vs. ExPASy TrEMBL
Match: V4S3T5 (Ribosomal_S10 domain-containing protein OS=Citrus clementina OX=85681 GN=CICLE_v10006225mg PE=3 SV=1) HSP 1 Score: 233.4 bits (594), Expect = 4.9e-58 Identity = 118/121 (97.52%), Postives = 119/121 (98.35%), Query Frame = 0
BLAST of MS017859 vs. ExPASy TrEMBL
Match: A0A2P5R6Y8 (Ribosomal_S10 domain-containing protein OS=Gossypium barbadense OX=3634 GN=ES319_D11G006400v1 PE=3 SV=1) HSP 1 Score: 232.6 bits (592), Expect = 8.4e-58 Identity = 118/121 (97.52%), Postives = 118/121 (97.52%), Query Frame = 0
BLAST of MS017859 vs. TAIR 10
Match: AT3G47370.2 (Ribosomal protein S10p/S20e family protein ) HSP 1 Score: 216.1 bits (549), Expect = 1.6e-56 Identity = 111/121 (91.74%), Postives = 112/121 (92.56%), Query Frame = 0
BLAST of MS017859 vs. TAIR 10
Match: AT3G47370.1 (Ribosomal protein S10p/S20e family protein ) HSP 1 Score: 216.1 bits (549), Expect = 1.6e-56 Identity = 111/121 (91.74%), Postives = 112/121 (92.56%), Query Frame = 0
BLAST of MS017859 vs. TAIR 10
Match: AT3G47370.3 (Ribosomal protein S10p/S20e family protein ) HSP 1 Score: 216.1 bits (549), Expect = 1.6e-56 Identity = 111/121 (91.74%), Postives = 112/121 (92.56%), Query Frame = 0
BLAST of MS017859 vs. TAIR 10
Match: AT3G45030.1 (Ribosomal protein S10p/S20e family protein ) HSP 1 Score: 213.8 bits (543), Expect = 7.8e-56 Identity = 110/120 (91.67%), Postives = 111/120 (92.50%), Query Frame = 0
BLAST of MS017859 vs. TAIR 10
Match: AT5G62300.1 (Ribosomal protein S10p/S20e family protein ) HSP 1 Score: 213.8 bits (543), Expect = 7.8e-56 Identity = 110/120 (91.67%), Postives = 111/120 (92.50%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25 Position : 0 Zoom : x 1
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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