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MS017838 (gene) Bitter gourd (TR) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.TGTGTTGTCTGCAAAATGGATTATCAAGTGAATGACATTGTGACTACTTTGCCCTGTACTCACAAATATCATCGAGATTGCATCTACGATTGGTTGAAGGATAACAACGTA TGTGTTGTCTGCAAAATGGATTATCAAGTGAATGACATTGTGACTACTTTGCCCTGTACTCACAAATATCATCGAGATTGCATCTACGATTGGTTGAAGGATAACAACGTA TGTGTTGTCTGCAAAATGGATTATCAAGTGAATGACATTGTGACTACTTTGCCCTGTACTCACAAATATCATCGAGATTGCATCTACGATTGGTTGAAGGATAACAACGTA CVVCKMDYQVNDIVTTLPCTHKYHRDCIYDWLKDNNV Homology
BLAST of MS017838 vs. NCBI nr
Match: OMO86024.1 (Zinc finger, RING-type [Corchorus capsularis]) HSP 1 Score: 62.0 bits (149), Expect = 1.2e-06 Identity = 23/35 (65.71%), Postives = 27/35 (77.14%), Query Frame = 0
BLAST of MS017838 vs. NCBI nr
Match: XP_021750561.1 (E3 ubiquitin ligase BIG BROTHER-related-like [Chenopodium quinoa]) HSP 1 Score: 58.5 bits (140), Expect = 1.4e-05 Identity = 22/35 (62.86%), Postives = 27/35 (77.14%), Query Frame = 0
BLAST of MS017838 vs. NCBI nr
Match: XP_021735447.1 (E3 ubiquitin ligase BIG BROTHER-related-like [Chenopodium quinoa]) HSP 1 Score: 58.5 bits (140), Expect = 1.4e-05 Identity = 22/35 (62.86%), Postives = 27/35 (77.14%), Query Frame = 0
BLAST of MS017838 vs. NCBI nr
Match: XP_024437707.1 (E3 ubiquitin ligase BIG BROTHER [Populus trichocarpa]) HSP 1 Score: 58.5 bits (140), Expect = 1.4e-05 Identity = 21/35 (60.00%), Postives = 27/35 (77.14%), Query Frame = 0
BLAST of MS017838 vs. NCBI nr
Match: PNT10973.1 (hypothetical protein POPTR_012G136400 [Populus trichocarpa]) HSP 1 Score: 58.5 bits (140), Expect = 1.4e-05 Identity = 21/35 (60.00%), Postives = 27/35 (77.14%), Query Frame = 0
BLAST of MS017838 vs. ExPASy Swiss-Prot
Match: Q9LT17 (E3 ubiquitin ligase BIG BROTHER-related OS=Arabidopsis thaliana OX=3702 GN=BBR PE=2 SV=1) HSP 1 Score: 52.0 bits (123), Expect = 1.7e-06 Identity = 18/37 (48.65%), Postives = 27/37 (72.97%), Query Frame = 0
BLAST of MS017838 vs. ExPASy Swiss-Prot
Match: Q5QLR5 (Probable E3 ubiquitin-protein ligase ZFP1 OS=Oryza sativa subsp. japonica OX=39947 GN=ZFP1 PE=1 SV=1) HSP 1 Score: 50.4 bits (119), Expect = 4.9e-06 Identity = 17/37 (45.95%), Postives = 25/37 (67.57%), Query Frame = 0
BLAST of MS017838 vs. ExPASy Swiss-Prot
Match: Q08DI6 (RING finger protein 11 OS=Bos taurus OX=9913 GN=RNF11 PE=2 SV=1) HSP 1 Score: 47.8 bits (112), Expect = 3.2e-05 Identity = 18/32 (56.25%), Postives = 21/32 (65.62%), Query Frame = 0
BLAST of MS017838 vs. ExPASy Swiss-Prot
Match: Q9Y3C5 (RING finger protein 11 OS=Homo sapiens OX=9606 GN=RNF11 PE=1 SV=1) HSP 1 Score: 47.8 bits (112), Expect = 3.2e-05 Identity = 18/32 (56.25%), Postives = 21/32 (65.62%), Query Frame = 0
BLAST of MS017838 vs. ExPASy Swiss-Prot
Match: Q9QYK7 (RING finger protein 11 OS=Mus musculus OX=10090 GN=Rnf11 PE=1 SV=1) HSP 1 Score: 47.8 bits (112), Expect = 3.2e-05 Identity = 18/32 (56.25%), Postives = 21/32 (65.62%), Query Frame = 0
BLAST of MS017838 vs. ExPASy TrEMBL
Match: A0A1R3ITX9 (Zinc finger, RING-type OS=Corchorus capsularis OX=210143 GN=CCACVL1_09868 PE=3 SV=1) HSP 1 Score: 62.0 bits (149), Expect = 6.0e-07 Identity = 23/35 (65.71%), Postives = 27/35 (77.14%), Query Frame = 0
BLAST of MS017838 vs. ExPASy TrEMBL
Match: A0A803MNV9 (Uncharacterized protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1) HSP 1 Score: 60.5 bits (145), Expect = 1.8e-06 Identity = 23/37 (62.16%), Postives = 28/37 (75.68%), Query Frame = 0
BLAST of MS017838 vs. ExPASy TrEMBL
Match: A0A0D6QRW9 (RING-type domain-containing protein OS=Araucaria cunninghamii OX=56994 PE=4 SV=1) HSP 1 Score: 60.1 bits (144), Expect = 2.3e-06 Identity = 20/37 (54.05%), Postives = 29/37 (78.38%), Query Frame = 0
BLAST of MS017838 vs. ExPASy TrEMBL
Match: A0A0C9S3B2 (TSA: Wollemia nobilis Ref_Wollemi_Transcript_30427_1357 transcribed RNA sequence OS=Wollemia nobilis OX=56998 PE=4 SV=1) HSP 1 Score: 60.1 bits (144), Expect = 2.3e-06 Identity = 20/37 (54.05%), Postives = 29/37 (78.38%), Query Frame = 0
BLAST of MS017838 vs. ExPASy TrEMBL
Match: A0A803LRZ0 (Uncharacterized protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1) HSP 1 Score: 58.5 bits (140), Expect = 6.7e-06 Identity = 22/35 (62.86%), Postives = 27/35 (77.14%), Query Frame = 0
BLAST of MS017838 vs. TAIR 10
Match: AT5G52140.1 (RING/U-box superfamily protein ) HSP 1 Score: 55.8 bits (133), Expect = 8.3e-09 Identity = 21/37 (56.76%), Postives = 25/37 (67.57%), Query Frame = 0
BLAST of MS017838 vs. TAIR 10
Match: AT5G52150.1 (RING/U-box superfamily protein ) HSP 1 Score: 53.9 bits (128), Expect = 3.2e-08 Identity = 19/37 (51.35%), Postives = 26/37 (70.27%), Query Frame = 0
BLAST of MS017838 vs. TAIR 10
Match: AT5G07225.1 (RING/U-box superfamily protein ) HSP 1 Score: 53.5 bits (127), Expect = 4.1e-08 Identity = 19/37 (51.35%), Postives = 27/37 (72.97%), Query Frame = 0
BLAST of MS017838 vs. TAIR 10
Match: AT3G19910.1 (RING/U-box superfamily protein ) HSP 1 Score: 52.0 bits (123), Expect = 1.2e-07 Identity = 18/37 (48.65%), Postives = 27/37 (72.97%), Query Frame = 0
BLAST of MS017838 vs. TAIR 10
Match: AT3G60080.1 (RING/U-box superfamily protein ) HSP 1 Score: 49.7 bits (117), Expect = 6.0e-07 Identity = 18/36 (50.00%), Postives = 23/36 (63.89%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25 Position : 0 Zoom : x 1
Relationships
The following mRNA feature(s) are a part of this gene:
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