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MS017837 (gene) Bitter gourd (TR) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.TGTGCTGTCTGCATAATGGATTTTAAAGTGAAGGACATTGTGACAACCTTGCCCTGTTCTCACGAATACCATCAAAGCTGCATCTACACTTGGTTAAAGGATAATAAAGTA TGTGCTGTCTGCATAATGGATTTTAAAGTGAAGGACATTGTGACAACCTTGCCCTGTTCTCACGAATACCATCAAAGCTGCATCTACACTTGGTTAAAGGATAATAAAGTA TGTGCTGTCTGCATAATGGATTTTAAAGTGAAGGACATTGTGACAACCTTGCCCTGTTCTCACGAATACCATCAAAGCTGCATCTACACTTGGTTAAAGGATAATAAAGTA CAVCIMDFKVKDIVTTLPCSHEYHQSCIYTWLKDNKV Homology
BLAST of MS017837 vs. NCBI nr
Match: KAF6154434.1 (hypothetical protein GIB67_028326 [Kingdonia uniflora]) HSP 1 Score: 58.9 bits (141), Expect = 1.1e-05 Identity = 21/37 (56.76%), Postives = 27/37 (72.97%), Query Frame = 0
BLAST of MS017837 vs. NCBI nr
Match: TQD88009.1 (hypothetical protein C1H46_026432 [Malus baccata]) HSP 1 Score: 58.2 bits (139), Expect = 1.8e-05 Identity = 20/36 (55.56%), Postives = 30/36 (83.33%), Query Frame = 0
BLAST of MS017837 vs. NCBI nr
Match: XP_040257082.1 (probable E3 ubiquitin-protein ligase RHC1A [Aegilops tauschii subsp. strangulata] >KAF7019156.1 hypothetical protein CFC21_032360 [Triticum aestivum]) HSP 1 Score: 57.8 bits (138), Expect = 2.3e-05 Identity = 22/32 (68.75%), Postives = 25/32 (78.12%), Query Frame = 0
BLAST of MS017837 vs. NCBI nr
Match: KAG7533902.1 (Zinc finger RING-type [Arabidopsis thaliana x Arabidopsis arenosa]) HSP 1 Score: 57.4 bits (137), Expect = 3.1e-05 Identity = 20/37 (54.05%), Postives = 29/37 (78.38%), Query Frame = 0
BLAST of MS017837 vs. NCBI nr
Match: KAG7537601.1 (Zinc finger RING-type [Arabidopsis suecica]) HSP 1 Score: 57.4 bits (137), Expect = 3.1e-05 Identity = 20/37 (54.05%), Postives = 29/37 (78.38%), Query Frame = 0
BLAST of MS017837 vs. ExPASy Swiss-Prot
Match: Q8NC42 (E3 ubiquitin-protein ligase RNF149 OS=Homo sapiens OX=9606 GN=RNF149 PE=2 SV=2) HSP 1 Score: 53.5 bits (127), Expect = 5.8e-07 Identity = 21/36 (58.33%), Postives = 27/36 (75.00%), Query Frame = 0
BLAST of MS017837 vs. ExPASy Swiss-Prot
Match: Q3U2C5 (E3 ubiquitin-protein ligase RNF149 OS=Mus musculus OX=10090 GN=Rnf149 PE=1 SV=3) HSP 1 Score: 53.1 bits (126), Expect = 7.6e-07 Identity = 20/36 (55.56%), Postives = 27/36 (75.00%), Query Frame = 0
BLAST of MS017837 vs. ExPASy Swiss-Prot
Match: Q3UHJ8 (RING finger protein 44 OS=Mus musculus OX=10090 GN=Rnf44 PE=2 SV=1) HSP 1 Score: 51.2 bits (121), Expect = 2.9e-06 Identity = 17/36 (47.22%), Postives = 25/36 (69.44%), Query Frame = 0
BLAST of MS017837 vs. ExPASy Swiss-Prot
Match: Q4V7B8 (RING finger protein 44 OS=Rattus norvegicus OX=10116 GN=Rnf44 PE=2 SV=1) HSP 1 Score: 51.2 bits (121), Expect = 2.9e-06 Identity = 17/36 (47.22%), Postives = 25/36 (69.44%), Query Frame = 0
BLAST of MS017837 vs. ExPASy Swiss-Prot
Match: Q8BI21 (E3 ubiquitin-protein ligase RNF38 OS=Mus musculus OX=10090 GN=Rnf38 PE=2 SV=1) HSP 1 Score: 49.7 bits (117), Expect = 8.4e-06 Identity = 16/36 (44.44%), Postives = 25/36 (69.44%), Query Frame = 0
BLAST of MS017837 vs. ExPASy TrEMBL
Match: A0A7J7MI35 (RING-type domain-containing protein OS=Kingdonia uniflora OX=39325 GN=GIB67_028326 PE=4 SV=1) HSP 1 Score: 58.9 bits (141), Expect = 5.1e-06 Identity = 21/37 (56.76%), Postives = 27/37 (72.97%), Query Frame = 0
BLAST of MS017837 vs. ExPASy TrEMBL
Match: A0A540LNW4 (RING-type domain-containing protein OS=Malus baccata OX=106549 GN=C1H46_026432 PE=4 SV=1) HSP 1 Score: 58.2 bits (139), Expect = 8.7e-06 Identity = 20/36 (55.56%), Postives = 30/36 (83.33%), Query Frame = 0
BLAST of MS017837 vs. ExPASy TrEMBL
Match: A0A453D955 (RING-type domain-containing protein OS=Aegilops tauschii subsp. strangulata OX=200361 PE=4 SV=1) HSP 1 Score: 57.8 bits (138), Expect = 1.1e-05 Identity = 22/32 (68.75%), Postives = 25/32 (78.12%), Query Frame = 0
BLAST of MS017837 vs. ExPASy TrEMBL
Match: A0A3B6DKS4 (RING-type domain-containing protein OS=Triticum aestivum OX=4565 PE=4 SV=1) HSP 1 Score: 57.8 bits (138), Expect = 1.1e-05 Identity = 22/32 (68.75%), Postives = 25/32 (78.12%), Query Frame = 0
BLAST of MS017837 vs. ExPASy TrEMBL
Match: A0A5J5AWA0 (RING-type domain-containing protein OS=Nyssa sinensis OX=561372 GN=F0562_031284 PE=4 SV=1) HSP 1 Score: 56.6 bits (135), Expect = 2.5e-05 Identity = 21/36 (58.33%), Postives = 26/36 (72.22%), Query Frame = 0
BLAST of MS017837 vs. TAIR 10
Match: AT5G52140.1 (RING/U-box superfamily protein ) HSP 1 Score: 55.5 bits (132), Expect = 1.1e-08 Identity = 20/37 (54.05%), Postives = 27/37 (72.97%), Query Frame = 0
BLAST of MS017837 vs. TAIR 10
Match: AT5G52150.1 (RING/U-box superfamily protein ) HSP 1 Score: 54.3 bits (129), Expect = 2.4e-08 Identity = 19/37 (51.35%), Postives = 27/37 (72.97%), Query Frame = 0
BLAST of MS017837 vs. TAIR 10
Match: AT3G51325.1 (RING/U-box superfamily protein ) HSP 1 Score: 49.7 bits (117), Expect = 6.0e-07 Identity = 16/31 (51.61%), Postives = 24/31 (77.42%), Query Frame = 0
BLAST of MS017837 vs. TAIR 10
Match: AT1G35625.1 (RING/U-box superfamily protein ) HSP 1 Score: 47.4 bits (111), Expect = 3.0e-06 Identity = 17/32 (53.12%), Postives = 24/32 (75.00%), Query Frame = 0
BLAST of MS017837 vs. TAIR 10
Match: AT5G45290.1 (RING/U-box superfamily protein ) HSP 1 Score: 47.4 bits (111), Expect = 3.0e-06 Identity = 14/34 (41.18%), Postives = 26/34 (76.47%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25 Position : 0 Zoom : x 1
Relationships
The following mRNA feature(s) are a part of this gene:
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