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MS017767 (gene) Bitter gourd (TR) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.CAGTTGTTTTTCTCGTACTTCAAGGATTTGGTGGGCAGAGAGGTGACGGTCGAGTTGAAGAACGACCTAGCGATTAGAGGAACTTTGCACTCTGTCGATCAATATCTCAACATCAAACTTGAAAACACGAGGGTTGTTGATCAAGACAAATACCCTCATATGGTATCTAACTTCTTTACTTGTATTATATTTAAGCGATATAATTGATTGATTATTTTTTGCGCTCACGCATTGTGATGAGACCTGCGTTTTTGACGGATTTGTTTTTATTTGTTTAGGTTTAAAATTTATGATTGGCACCTTCATTCTCTTCATTTCTGCTTAATTTTTATTCCCCTTACCTCTTTATGCTCGTTTCATTCTATTAATTGACATATTATTCTGTGGCGAGATGTATGATATATGGTTACAGTTCACAGATTATTTGTAGCACCGTTTGATATCGTCACCTTAACATTTCAATTATGTACTGTCTAAATTGAGAACATTGATTGTCTTTTCATCCATTTCCCTTTCTTGAATTTTCTTTAGGGGAAGATTTCTAGTAGTAACTTTGTGGGTGGTTCCCAATTTCGGTGGAGTTCTCTAATGTCACTTGGCTAGAAATCCTATCAGGGACCATTTGTTTCTTTCTTGCTGATTTTGAAGGGGAAGGGTAACAAGGTTTTGGATTATATTTAGTGCGAGTCTTGTTTATGTTTTTCTTTTTGGATAACGAGGACATTTCACTCCTAATCTAAATTTTCGATACAAGTAAAAAATTATCAGTGTGATAACTTTGACGATGGTAAAGGTCAATGTAGCAATTAGGTTCTCTGAATCTGTTATATATATTTATATAGTACATAAATGTGGAGATGGGAGATAAAATAATTCAGCATTATGGAAGGGAAGGTAGTAGGTGGCTTATCTATAGAGCTATGCTCGGATTGACTATGAATCTATTATATTTTTTTGGAATCAATCAATGTGAATTGTTTAAGAGAGAAGTGGGAAGCATTTGTGAAAGTAGAGGGTTTCCTGGTTGAGCTTAATTTGATTTTCTAATCCCACTAGGAATCTAAAAGACTAGTTCTTATGGACTATCAGGTGCATGTGGTCTCTAGTTCATGATTTTTTCCCCAACTACTCAACTTCTGATGTAGGAGATTAGTAGAATTTGTTTGGTATTAATTGTTGTTTTTTAGCTACAATTTATTAATTATTTTTAGTTGGAGATTGATATGTTTGCCAAGTAGTTTTGTGGATTAATTGCTTTTAGTTAGTTAGTTAGTTTTTCTATTTGTTAGTTAGCTAAGCTACCTCTTGTCCTCTATAAATAAAGGATGATCATCTTCAAAACTTTTTGAATCGGGTAGAGTTTTTTGTTCCGGAGCCTAAATGCCAGTTGCATTACTAACAAGTGGGGAAGAACACTCATTTAATACTCATGCAGATACATGAAGAGGCCGAGAAATTTTTTTTTGAACAAGATACAGAAGAGGCCAATAAATAGTGGTTACAGAAATGGACCATCTTCAGACAAATCAGACCAAAAACACTCGTTTTGTATCAAGAATGTAGTTTTATAGATTGTGTAACTAAATGTATAGCCTAAGTGCTGTGGTGGTTTTTTGTTTTTTGAACCAAAACTTAGTTTAATACTACTTATTACAAAGGTACCATCTTCTTTCTTTAGCCTGTCTGTTCAATATCTGTTTTCTGATAGAATTTAAATTCTCCTGTGGCTTCCTGTAAGGCCACGGTTTTGAAGAAAGAGTAAAATTTTGAAACCAATAATGGCCATGGTGTGTAAACTTTGGTTTAAAAGATACCATATGATGGGCATTGGATATATAAGAATGAGTTTGCAGTGTAGGAACGGGAACTTTGCCTTTTTTCCCAGCATCTAGTTCTTGTTCATTGTGGAATGAATTTTGTTTTTATTCTCCTTTCTTGATACAAGCCAATCTGAAATTACACTTCGGTCACATAACAAAAAGTCTGAACTGTAGGGGGTAGGAAGGCTTACTGTTGTTGCCTGTTGGTTGCCGATTCTTTTATGGTTGGTGAATACTCTTTGTTTTTACGTGACCAAGGACATCTGCAAATTTCTAATATATATAAGAAAGAAGAAAGAAAAATGAACATCTGAAAATCCATTTTTTCATTTTGTTCTGCTCTGTGGTCTTAAATTTACTGAGCCCCCAATCCATTCTGTAATCTGCTGCCTGTAATTTTGTTGTTGTCTTGAACTAATCGTGCAAAATTTCTCTCATTTCAGCTTTCAGTGAGAAACTGTTTTATCAGGGGGTCGGTGGTGAGATATGTTCAACTTCCGCCAGATGGTGTTGATATCGAGCTCTTGCATGATGCCACAAGACGCGAGGCTCGGGGTGGC CAGTTGTTTTTCTCGTACTTCAAGGATTTGGTGGGCAGAGAGGTGACGGTCGAGTTGAAGAACGACCTAGCGATTAGAGGAACTTTGCACTCTGTCGATCAATATCTCAACATCAAACTTGAAAACACGAGGGTTGTTGATCAAGACAAATACCCTCATATGCTTTCAGTGAGAAACTGTTTTATCAGGGGGTCGGTGGTGAGATATGTTCAACTTCCGCCAGATGGTGTTGATATCGAGCTCTTGCATGATGCCACAAGACGCGAGGCTCGGGGTGGC CAGTTGTTTTTCTCGTACTTCAAGGATTTGGTGGGCAGAGAGGTGACGGTCGAGTTGAAGAACGACCTAGCGATTAGAGGAACTTTGCACTCTGTCGATCAATATCTCAACATCAAACTTGAAAACACGAGGGTTGTTGATCAAGACAAATACCCTCATATGCTTTCAGTGAGAAACTGTTTTATCAGGGGGTCGGTGGTGAGATATGTTCAACTTCCGCCAGATGGTGTTGATATCGAGCTCTTGCATGATGCCACAAGACGCGAGGCTCGGGGTGGC QLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGSVVRYVQLPPDGVDIELLHDATRREARGG Homology
BLAST of MS017767 vs. NCBI nr
Match: MBA0708852.1 (hypothetical protein [Gossypium laxum]) HSP 1 Score: 193.4 bits (490), Expect = 9.0e-46 Identity = 93/93 (100.00%), Postives = 93/93 (100.00%), Query Frame = 0
BLAST of MS017767 vs. NCBI nr
Match: THG15486.1 (hypothetical protein TEA_020719 [Camellia sinensis var. sinensis]) HSP 1 Score: 192.2 bits (487), Expect = 2.0e-45 Identity = 92/93 (98.92%), Postives = 93/93 (100.00%), Query Frame = 0
BLAST of MS017767 vs. NCBI nr
Match: CAA2970238.1 (sm LSM2 [Olea europaea subsp. europaea] >CAA3028287.1 sm LSM2 [Olea europaea subsp. europaea]) HSP 1 Score: 192.2 bits (487), Expect = 2.0e-45 Identity = 91/93 (97.85%), Postives = 93/93 (100.00%), Query Frame = 0
BLAST of MS017767 vs. NCBI nr
Match: OWM87166.1 (hypothetical protein CDL15_Pgr010198 [Punica granatum]) HSP 1 Score: 191.8 bits (486), Expect = 2.6e-45 Identity = 92/93 (98.92%), Postives = 93/93 (100.00%), Query Frame = 0
BLAST of MS017767 vs. NCBI nr
Match: MBA0715229.1 (hypothetical protein [Gossypium laxum]) HSP 1 Score: 191.8 bits (486), Expect = 2.6e-45 Identity = 92/93 (98.92%), Postives = 93/93 (100.00%), Query Frame = 0
BLAST of MS017767 vs. ExPASy Swiss-Prot
Match: Q1H595 (Sm-like protein LSM2 OS=Arabidopsis thaliana OX=3702 GN=LSM2 PE=1 SV=1) HSP 1 Score: 183.0 bits (463), Expect = 1.6e-45 Identity = 87/92 (94.57%), Postives = 90/92 (97.83%), Query Frame = 0
BLAST of MS017767 vs. ExPASy Swiss-Prot
Match: Q9Y333 (U6 snRNA-associated Sm-like protein LSm2 OS=Homo sapiens OX=9606 GN=LSM2 PE=1 SV=1) HSP 1 Score: 140.6 bits (353), Expect = 9.1e-33 Identity = 66/89 (74.16%), Postives = 76/89 (85.39%), Query Frame = 0
BLAST of MS017767 vs. ExPASy Swiss-Prot
Match: O35900 (U6 snRNA-associated Sm-like protein LSm2 OS=Mus musculus OX=10090 GN=Lsm2 PE=1 SV=1) HSP 1 Score: 140.6 bits (353), Expect = 9.1e-33 Identity = 66/89 (74.16%), Postives = 76/89 (85.39%), Query Frame = 0
BLAST of MS017767 vs. ExPASy Swiss-Prot
Match: Q54TF6 (Probable U6 snRNA-associated Sm-like protein LSm2 OS=Dictyostelium discoideum OX=44689 GN=lsm2 PE=3 SV=1) HSP 1 Score: 132.1 bits (331), Expect = 3.2e-30 Identity = 60/90 (66.67%), Postives = 77/90 (85.56%), Query Frame = 0
BLAST of MS017767 vs. ExPASy Swiss-Prot
Match: P38203 (U6 snRNA-associated Sm-like protein LSm2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=LSM2 PE=1 SV=1) HSP 1 Score: 119.4 bits (298), Expect = 2.2e-26 Identity = 58/88 (65.91%), Postives = 68/88 (77.27%), Query Frame = 0
BLAST of MS017767 vs. ExPASy TrEMBL
Match: A0A7J8ZBA4 (Sm domain-containing protein (Fragment) OS=Gossypium laxum OX=34288 GN=Golax_023938 PE=3 SV=1) HSP 1 Score: 193.4 bits (490), Expect = 4.4e-46 Identity = 93/93 (100.00%), Postives = 93/93 (100.00%), Query Frame = 0
BLAST of MS017767 vs. ExPASy TrEMBL
Match: A0A4S4EHZ0 (Uncharacterized protein OS=Camellia sinensis var. sinensis OX=542762 GN=TEA_020719 PE=3 SV=1) HSP 1 Score: 192.2 bits (487), Expect = 9.7e-46 Identity = 92/93 (98.92%), Postives = 93/93 (100.00%), Query Frame = 0
BLAST of MS017767 vs. ExPASy TrEMBL
Match: A0A061DXU9 (BTB-POZ and MATH domain 2 OS=Theobroma cacao OX=3641 GN=TCM_004456 PE=3 SV=1) HSP 1 Score: 191.8 bits (486), Expect = 1.3e-45 Identity = 92/93 (98.92%), Postives = 93/93 (100.00%), Query Frame = 0
BLAST of MS017767 vs. ExPASy TrEMBL
Match: A0A1R3I5D7 (BTB/POZ-like protein OS=Corchorus capsularis OX=210143 GN=CCACVL1_14828 PE=3 SV=1) HSP 1 Score: 191.8 bits (486), Expect = 1.3e-45 Identity = 92/93 (98.92%), Postives = 93/93 (100.00%), Query Frame = 0
BLAST of MS017767 vs. ExPASy TrEMBL
Match: F6HQ57 (Sm-like protein LSM2 OS=Vitis vinifera OX=29760 GN=VIT_07s0104g00560 PE=3 SV=1) HSP 1 Score: 191.8 bits (486), Expect = 1.3e-45 Identity = 92/93 (98.92%), Postives = 93/93 (100.00%), Query Frame = 0
BLAST of MS017767 vs. TAIR 10
Match: AT1G03330.1 (Small nuclear ribonucleoprotein family protein ) HSP 1 Score: 183.0 bits (463), Expect = 1.1e-46 Identity = 87/92 (94.57%), Postives = 90/92 (97.83%), Query Frame = 0
BLAST of MS017767 vs. TAIR 10
Match: AT3G07590.1 (Small nuclear ribonucleoprotein family protein ) HSP 1 Score: 42.4 bits (98), Expect = 2.4e-04 Identity = 23/77 (29.87%), Postives = 43/77 (55.84%), Query Frame = 0
BLAST of MS017767 vs. TAIR 10
Match: AT3G07590.2 (Small nuclear ribonucleoprotein family protein ) HSP 1 Score: 42.4 bits (98), Expect = 2.4e-04 Identity = 23/77 (29.87%), Postives = 43/77 (55.84%), Query Frame = 0
BLAST of MS017767 vs. TAIR 10
Match: AT4G02840.1 (Small nuclear ribonucleoprotein family protein ) HSP 1 Score: 42.4 bits (98), Expect = 2.4e-04 Identity = 23/77 (29.87%), Postives = 43/77 (55.84%), Query Frame = 0
BLAST of MS017767 vs. TAIR 10
Match: AT3G59810.1 (Small nuclear ribonucleoprotein family protein ) HSP 1 Score: 41.6 bits (96), Expect = 4.1e-04 Identity = 22/65 (33.85%), Postives = 35/65 (53.85%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25 Position : 0 Zoom : x 1
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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