MS017678 (gene) Bitter gourd (TR) v1

Overview


Name	MS017678
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Unknown protein
Location	scaffold373: 1461250 .. 1461609 (-)
RNA-Seq Expression	MS017678
Synteny	MS017678

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGGGCTCCTGTACGTTGCTTGCCTCGGTGCTCGCCGCCTCCACCATGGCTTTCTCCTCTTCTTCTTCCTCCGGTGGAGATCGTGATGCCGCTCTTTCTCCTCCCTCTCGACAGGTATTATCTCCGTCGCCTTCGATTTCTTCTCTCCTCTGTTTGTTTTCGCGTGTTCCGTTTTCAATCTCGAGAAATTTCAACGTCCTGATCGGTTTTAATTTGACGGACGGTTTTATTTAGGGCCTAGCTTCGGAATCCGGTGCGAACAGAGGTTGCGGTTCGGATTCGTCATCGGAGAAGGAGAAATTTGCGCCGAGGTTCGATGGGTTGAGATTCATTGAGACTCTGGTAACCGCTCACAGA

mRNA sequence

ATGAAGGGCTCCTGTACGTTGCTTGCCTCGGTGCTCGCCGCCTCCACCATGGCTTTCTCCTCTTCTTCTTCCTCCGGTGGAGATCGTGATGCCGCTCTTTCTCCTCCCTCTCGACAGGGCCTAGCTTCGGAATCCGGTGCGAACAGAGGTTGCGGTTCGGATTCGTCATCGGAGAAGGAGAAATTTGCGCCGAGGTTCGATGGGTTGAGATTCATTGAGACTCTGGTAACCGCTCACAGA

Coding sequence (CDS)

ATGAAGGGCTCCTGTACGTTGCTTGCCTCGGTGCTCGCCGCCTCCACCATGGCTTTCTCCTCTTCTTCTTCCTCCGGTGGAGATCGTGATGCCGCTCTTTCTCCTCCCTCTCGACAGGGCCTAGCTTCGGAATCCGGTGCGAACAGAGGTTGCGGTTCGGATTCGTCATCGGAGAAGGAGAAATTTGCGCCGAGGTTCGATGGGTTGAGATTCATTGAGACTCTGGTAACCGCTCACAGA

Protein sequence

MKGSCTLLASVLAASTMAFSSSSSSGGDRDAALSPPSRQGLASESGANRGCGSDSSSEKEKFAPRFDGLRFIETLVTAHR

Homology

[Close]

BLAST of MS017678 vs. NCBI nr
Match: XP_008437456.1 (PREDICTED: uncharacterized protein LOC103482871 [Cucumis melo])

HSP 1 Score: 131.0 bits (328), Expect = 4.7e-27
Identity = 71/80 (88.75%), Postives = 72/80 (90.00%), Query Frame = 0


Query: 1  MKGSCTLLASVLAASTMAFSSSSSSGGDRDAALSPPSRQGLASESGANRGCGSDSSSEKE 60
          MKGSCTLLASVLAASTMAFSSSSSS GDRD  L PPS QG   ESGANRGCG+DSSSEKE
Sbjct: 1  MKGSCTLLASVLAASTMAFSSSSSSTGDRDLPLYPPSHQGFVPESGANRGCGADSSSEKE 60

Query: 61 KFAPRFDGLRFIETLVTAHR 81
          KFAPRFDGLRFIETLVTAHR
Sbjct: 61 KFAPRFDGLRFIETLVTAHR 80

[Close]

BLAST of MS017678 vs. NCBI nr
Match: XP_022929045.1 (uncharacterized protein LOC111435756 [Cucurbita moschata] >XP_022970121.1 uncharacterized protein LOC111469110 [Cucurbita maxima] >KAG7017053.1 hypothetical protein SDJN02_22165 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 129.4 bits (324), Expect = 1.4e-26
Identity = 71/81 (87.65%), Postives = 75/81 (92.59%), Query Frame = 0


Query: 1  MKGSCTLLASVLAASTMAFSSSSSSGG-DRDAALSPPSRQGLASESGANRGCGSDSSSEK 60
          MKGSCTLLASVLAASTMAFSSSSSS   DRD AL+PPSR+G  SESG+NRGCGSDSS+EK
Sbjct: 1  MKGSCTLLASVLAASTMAFSSSSSSSNEDRDLALNPPSREGFVSESGSNRGCGSDSSAEK 60

Query: 61 EKFAPRFDGLRFIETLVTAHR 81
          EKFAPRFDGLRFIETLVTAHR
Sbjct: 61 EKFAPRFDGLRFIETLVTAHR 81

[Close]

BLAST of MS017678 vs. NCBI nr
Match: XP_023520500.1 (uncharacterized protein LOC111783920 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 128.3 bits (321), Expect = 3.1e-26
Identity = 70/81 (86.42%), Postives = 75/81 (92.59%), Query Frame = 0


Query: 1  MKGSCTLLASVLAASTMAFSSSSSSGG-DRDAALSPPSRQGLASESGANRGCGSDSSSEK 60
          MKGSCTLLASVLAASTMAFSSSSSS   DRD AL+PPSR+G  SESG+NRGCGSD+S+EK
Sbjct: 1  MKGSCTLLASVLAASTMAFSSSSSSSNEDRDLALNPPSREGFVSESGSNRGCGSDASAEK 60

Query: 61 EKFAPRFDGLRFIETLVTAHR 81
          EKFAPRFDGLRFIETLVTAHR
Sbjct: 61 EKFAPRFDGLRFIETLVTAHR 81

[Close]

BLAST of MS017678 vs. NCBI nr
Match: KAA0042639.1 (uncharacterized protein E6C27_scaffold44G001370 [Cucumis melo var. makuwa] >TYK06040.1 uncharacterized protein E5676_scaffold376G001410 [Cucumis melo var. makuwa])

HSP 1 Score: 124.8 bits (312), Expect = 3.4e-25
Identity = 72/90 (80.00%), Postives = 73/90 (81.11%), Query Frame = 0


Query: 1  MKGSCTLLASVLAASTMAFSSSSSSGGDRDAALSPPSRQ----------GLASESGANRG 60
          MKGSCTLLASVLAASTMAFSSSSSS GDRD  L PPS Q          G  SESGANRG
Sbjct: 1  MKGSCTLLASVLAASTMAFSSSSSSTGDRDLPLYPPSHQALSPSPSLSIGFVSESGANRG 60

Query: 61 CGSDSSSEKEKFAPRFDGLRFIETLVTAHR 81
          CG+DSSSEKEKFAPRFDGLRFIETLVTAHR
Sbjct: 61 CGADSSSEKEKFAPRFDGLRFIETLVTAHR 90

[Close]

BLAST of MS017678 vs. NCBI nr
Match: KAG7035524.1 (hypothetical protein SDJN02_02320 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 122.1 bits (305), Expect = 2.2e-24
Identity = 69/81 (85.19%), Postives = 73/81 (90.12%), Query Frame = 0


Query: 1  MKGSCTLLASVLAASTMAF-SSSSSSGGDRDAALSPPSRQGLASESGANRGCGSDSSSEK 60
          MKG+CTLLASVLAASTMAF SSSSSS GDRD AL PPS +G  S+S ANRGCGSDSSSEK
Sbjct: 1  MKGTCTLLASVLAASTMAFSSSSSSSSGDRDLALYPPSLEGSVSDSLANRGCGSDSSSEK 60

Query: 61 EKFAPRFDGLRFIETLVTAHR 81
          EKFAPRFDGL+FIETLVTAHR
Sbjct: 61 EKFAPRFDGLKFIETLVTAHR 81

[Close]

BLAST of MS017678 vs. ExPASy TrEMBL
Match: A0A1S3AU25 (uncharacterized protein LOC103482871 OS=Cucumis melo OX=3656 GN=LOC103482871 PE=4 SV=1)

HSP 1 Score: 131.0 bits (328), Expect = 2.3e-27
Identity = 71/80 (88.75%), Postives = 72/80 (90.00%), Query Frame = 0


Query: 1  MKGSCTLLASVLAASTMAFSSSSSSGGDRDAALSPPSRQGLASESGANRGCGSDSSSEKE 60
          MKGSCTLLASVLAASTMAFSSSSSS GDRD  L PPS QG   ESGANRGCG+DSSSEKE
Sbjct: 1  MKGSCTLLASVLAASTMAFSSSSSSTGDRDLPLYPPSHQGFVPESGANRGCGADSSSEKE 60

Query: 61 KFAPRFDGLRFIETLVTAHR 81
          KFAPRFDGLRFIETLVTAHR
Sbjct: 61 KFAPRFDGLRFIETLVTAHR 80

[Close]

BLAST of MS017678 vs. ExPASy TrEMBL
Match: A0A6J1HZR1 (uncharacterized protein LOC111469110 OS=Cucurbita maxima OX=3661 GN=LOC111469110 PE=4 SV=1)

HSP 1 Score: 129.4 bits (324), Expect = 6.6e-27
Identity = 71/81 (87.65%), Postives = 75/81 (92.59%), Query Frame = 0


Query: 1  MKGSCTLLASVLAASTMAFSSSSSSGG-DRDAALSPPSRQGLASESGANRGCGSDSSSEK 60
          MKGSCTLLASVLAASTMAFSSSSSS   DRD AL+PPSR+G  SESG+NRGCGSDSS+EK
Sbjct: 1  MKGSCTLLASVLAASTMAFSSSSSSSNEDRDLALNPPSREGFVSESGSNRGCGSDSSAEK 60

Query: 61 EKFAPRFDGLRFIETLVTAHR 81
          EKFAPRFDGLRFIETLVTAHR
Sbjct: 61 EKFAPRFDGLRFIETLVTAHR 81

[Close]

BLAST of MS017678 vs. ExPASy TrEMBL
Match: A0A6J1ET49 (uncharacterized protein LOC111435756 OS=Cucurbita moschata OX=3662 GN=LOC111435756 PE=4 SV=1)

HSP 1 Score: 129.4 bits (324), Expect = 6.6e-27
Identity = 71/81 (87.65%), Postives = 75/81 (92.59%), Query Frame = 0


Query: 1  MKGSCTLLASVLAASTMAFSSSSSSGG-DRDAALSPPSRQGLASESGANRGCGSDSSSEK 60
          MKGSCTLLASVLAASTMAFSSSSSS   DRD AL+PPSR+G  SESG+NRGCGSDSS+EK
Sbjct: 1  MKGSCTLLASVLAASTMAFSSSSSSSNEDRDLALNPPSREGFVSESGSNRGCGSDSSAEK 60

Query: 61 EKFAPRFDGLRFIETLVTAHR 81
          EKFAPRFDGLRFIETLVTAHR
Sbjct: 61 EKFAPRFDGLRFIETLVTAHR 81

[Close]

BLAST of MS017678 vs. ExPASy TrEMBL
Match: A0A5A7TMP9 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold376G001410 PE=4 SV=1)

HSP 1 Score: 124.8 bits (312), Expect = 1.6e-25
Identity = 72/90 (80.00%), Postives = 73/90 (81.11%), Query Frame = 0


Query: 1  MKGSCTLLASVLAASTMAFSSSSSSGGDRDAALSPPSRQ----------GLASESGANRG 60
          MKGSCTLLASVLAASTMAFSSSSSS GDRD  L PPS Q          G  SESGANRG
Sbjct: 1  MKGSCTLLASVLAASTMAFSSSSSSTGDRDLPLYPPSHQALSPSPSLSIGFVSESGANRG 60

Query: 61 CGSDSSSEKEKFAPRFDGLRFIETLVTAHR 81
          CG+DSSSEKEKFAPRFDGLRFIETLVTAHR
Sbjct: 61 CGADSSSEKEKFAPRFDGLRFIETLVTAHR 90

[Close]

BLAST of MS017678 vs. ExPASy TrEMBL
Match: A0A0A0KQK5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G146940 PE=4 SV=1)

HSP 1 Score: 120.9 bits (302), Expect = 2.4e-24
Identity = 70/84 (83.33%), Postives = 71/84 (84.52%), Query Frame = 0


Query: 1  MKGSCTLLASVLAASTMAFSSSSSSG----GDRDAALSPPSRQGLASESGANRGCGSDSS 60
          MKGSCTLLASVLAASTMAFSSSSSS     GDRD  L   S QG  SESGANRGCG+DSS
Sbjct: 1  MKGSCTLLASVLAASTMAFSSSSSSSSSFTGDRDLPLYSLSHQGFVSESGANRGCGADSS 60

Query: 61 SEKEKFAPRFDGLRFIETLVTAHR 81
          SEKEKFAPRFDGLRFIETLVTAHR
Sbjct: 61 SEKEKFAPRFDGLRFIETLVTAHR 84

[Close]

BLAST of MS017678 vs. TAIR 10
Match: AT4G28290.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; Has 45 Blast hits to 45 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 45; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 46.6 bits (109), Expect = 1.1e-05
Identity = 38/85 (44.71%), Postives = 48/85 (56.47%), Query Frame = 0


Query: 1  MKGSCTLLASV-LAASTMAFSSSSSSGGDRDAALSPP----SRQGLASESGANRGCGSDS 60
          MK +  + AS+ +AAS  A S+ S+   +   + S P    SRQ    +    +G   D 
Sbjct: 1  MKKTGIIAASISVAASATAISAGST---NTSVSFSSPESNLSRQEAKEKQRKKKGSSEDG 60

Query: 61 SSEKEKFAPRFDGLRFIETLVTAHR 81
              EKFAPRFDGLRFIETLVTAHR
Sbjct: 61 GD--EKFAPRFDGLRFIETLVTAHR 80

[Close]

BLAST of MS017678 vs. TAIR 10
Match: AT5G42110.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 6 growth stages; Has 36 Blast hits to 36 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 36; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 46.2 bits (108), Expect = 1.4e-05
Identity = 38/80 (47.50%), Postives = 44/80 (55.00%), Query Frame = 0


Query: 1  MKGSCTLLASVLAASTMAFSSSSSSGGDRDAALSPPSRQGLASESGANRGCGSDSSSEKE 60
          MK S  ++ASV+A ST A SSSS         + PP    +      N   GSD+     
Sbjct: 1  MKVSSGVVASVIAVSTAALSSSS---------ILPPVSPKVWESRKTN---GSDN----- 60

Query: 61 KFAPRFDGLRFIETLVTAHR 81
           F PRFDGLRFIETLVTAHR
Sbjct: 61 -FEPRFDGLRFIETLVTAHR 62

The following BLAST results are available for this feature:

BLAST of MS017678 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008437456.1	4.7e-27	88.75	PREDICTED: uncharacterized protein LOC103482871 [Cucumis melo]	[more]
XP_022929045.1	1.4e-26	87.65	uncharacterized protein LOC111435756 [Cucurbita moschata] >XP_022970121.1 unchar...	[more]
XP_023520500.1	3.1e-26	86.42	uncharacterized protein LOC111783920 [Cucurbita pepo subsp. pepo]	[more]
KAA0042639.1	3.4e-25	80.00	uncharacterized protein E6C27_scaffold44G001370 [Cucumis melo var. makuwa] >TYK0...	[more]
KAG7035524.1	2.2e-24	85.19	hypothetical protein SDJN02_02320 [Cucurbita argyrosperma subsp. argyrosperma]	[more]

BLAST of MS017678 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MS017678 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3AU25	2.3e-27	88.75	uncharacterized protein LOC103482871 OS=Cucumis melo OX=3656 GN=LOC103482871 PE=...	[more]
A0A6J1HZR1	6.6e-27	87.65	uncharacterized protein LOC111469110 OS=Cucurbita maxima OX=3661 GN=LOC111469110...	[more]
A0A6J1ET49	6.6e-27	87.65	uncharacterized protein LOC111435756 OS=Cucurbita moschata OX=3662 GN=LOC1114357...	[more]
A0A5A7TMP9	1.6e-25	80.00	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A0A0KQK5	2.4e-24	83.33	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G146940 PE=4 SV=1	[more]

BLAST of MS017678 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G28290.1	1.1e-05	44.71	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT5G42110.1	1.4e-05	47.50	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 19..61
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 38..53
None	No IPR available	PANTHER	PTHR34683	EXPRESSED PROTEIN-RELATED	coord: 1..80
None	No IPR available	PANTHER	PTHR34683:SF3	BNAUNNG00100D PROTEIN	coord: 1..80

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS017678.1	MS017678.1	mRNA