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MS017614 (gene) Bitter gourd (TR) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGGTAGTTTCCATGGCGAACATTTCCTCCTTCAACAATACTGGTCCACCTCCACATTCTCCTCGCACTCGCAGCCACAACGCTCACAATTTCAAATTCTATCGCCTTATCTGCTGCCGCGTCCATTGGAAGACGGTCTTCTTCTCTTCTGGCCCTAGTCTGGCTGAATCGCTTCGTTCTCTGCAGCCCATGAGACGGAATTTAGCCAACTTCACTTGCTCCGCTGCTGAAAAATCGGAAATCAGGTTGTTCTCTCTATAGTGTTTGATGGAATATCAATGGCTGATGATTTTAGTTTAGTTTTTCCTTTACGACGAATATTCCATTGAAATTACTTCGTTTGGAATTCGGGACTAGTTAACCTTTTCATTGCTCATTTCGATAAAGAATATGCTATGAATTCTATGTTAAAGCACTGGAAGTTTAGCTCATTTGCGAGGAAAGAACTCTAATGCATTGCAACTAATTGTGTCTGCATTTGATTTTACTAGTTTTATGTTCCTTTTCTTTGTAAATTCGAGTGGCTGCATTCGCGGACGACCTACCAACAAAAATTTGAGGAAACTACGAGCTTTCATCATCAAGACTGGCTTCTTGTTTGAGCGTTTCCCTCTGTTACACTAACTGTTTTGTTCTTGTTTTCTGTTTTAAAAAATTAATTTGATAAACACTACTTCCACTCCCACCCATATGTTTCTTTGATTTAAAAACATTTTCAAAATCTAAGCTGCATTTTGAAATTCATATTTTTATTTTTAAAATTTGACTAAGAAATTAGATGTATTTTTAAGAAATGCAACAAGACAACTAAAAGTGAAATAATTATCAGGGCGGTGTTAGTTGGTTGTCATTTTGATCATTAATGCTTTTAATTTACAAACGAAAGACCAAGAGGAAGCTGGTGTAGTCTGATTGGTTTTCTTCTATCTTAATGTTTTTTTTTTCAGTCTACCTGTTATTCAACCTGAAATGAGGCTTTGTGTGACCATATCTGTTTTTTTCTTAGTTCCACGGCCAAGATAAGAAGTGAAGTTCTCTCTCCTTTTCGATCCGTTCGGATGTTCTTTTATCTCACTTTCATTGCCAGTGGTACATTGGGAGGACTGATTGCAACCACTCAATTGCTAGCTGCATTGGCAAATTCATCAAGAGCTGAACAAGTCCCTGATATTCTAAAAGGACTTGGAATAGACTTCGGAGCCGTAGCTCTTTTTGCATTTCTTTACTTCAGAGAGAACAATGCGAAAAATGCTCAGTTGGCAAGACTTTCAAGAGAAGAAAGTCTTTCGAATCTGAAGCTTCGAGTGGACCAAAGCAAAGTTATTCCTCTCAGCTCTCTGCGTGGGATTGCTCGTCTGGTAATTTGTGCTGGCCCTGAATCCTTTATCATGGAAGCTTTTAGATCAAGTGAACCTTTCACTGAACAACTTCTAGAACGGGGCGTGGTAGTCGTACCCTTTGCCACAGATGTCAATTCCCTGAATTTTGAGTTTGATGAACGTGAAGATTTGAAGGATGTAACCACCAAAAGAAAAAGACTCTGGCGGTTGACTCCAGTTTACATGCCCGAGTGGTCGGCG ATGGTAGTTTCCATGGCGAACATTTCCTCCTTCAACAATACTGGTCCACCTCCACATTCTCCTCGCACTCGCAGCCACAACGCTCACAATTTCAAATTCTATCGCCTTATCTGCTGCCGCGTCCATTGGAAGACGGTCTTCTTCTCTTCTGGCCCTAGTCTGGCTGAATCGCTTCGTTCTCTGCAGCCCATGAGACGGAATTTAGCCAACTTCACTTGCTCCGCTGCTGAAAAATCGGAAATCAGTTCCACGGCCAAGATAAGAAGTGAAGTTCTCTCTCCTTTTCGATCCGTTCGGATGTTCTTTTATCTCACTTTCATTGCCAGTGGTACATTGGGAGGACTGATTGCAACCACTCAATTGCTAGCTGCATTGGCAAATTCATCAAGAGCTGAACAAGTCCCTGATATTCTAAAAGGACTTGGAATAGACTTCGGAGCCGTAGCTCTTTTTGCATTTCTTTACTTCAGAGAGAACAATGCGAAAAATGCTCAGTTGGCAAGACTTTCAAGAGAAGAAAGTCTTTCGAATCTGAAGCTTCGAGTGGACCAAAGCAAAGTTATTCCTCTCAGCTCTCTGCGTGGGATTGCTCGTCTGGTAATTTGTGCTGGCCCTGAATCCTTTATCATGGAAGCTTTTAGATCAAGTGAACCTTTCACTGAACAACTTCTAGAACGGGGCGTGGTAGTCGTACCCTTTGCCACAGATGTCAATTCCCTGAATTTTGAGTTTGATGAACGTGAAGATTTGAAGGATGTAACCACCAAAAGAAAAAGACTCTGGCGGTTGACTCCAGTTTACATGCCCGAGTGGTCGGCG ATGGTAGTTTCCATGGCGAACATTTCCTCCTTCAACAATACTGGTCCACCTCCACATTCTCCTCGCACTCGCAGCCACAACGCTCACAATTTCAAATTCTATCGCCTTATCTGCTGCCGCGTCCATTGGAAGACGGTCTTCTTCTCTTCTGGCCCTAGTCTGGCTGAATCGCTTCGTTCTCTGCAGCCCATGAGACGGAATTTAGCCAACTTCACTTGCTCCGCTGCTGAAAAATCGGAAATCAGTTCCACGGCCAAGATAAGAAGTGAAGTTCTCTCTCCTTTTCGATCCGTTCGGATGTTCTTTTATCTCACTTTCATTGCCAGTGGTACATTGGGAGGACTGATTGCAACCACTCAATTGCTAGCTGCATTGGCAAATTCATCAAGAGCTGAACAAGTCCCTGATATTCTAAAAGGACTTGGAATAGACTTCGGAGCCGTAGCTCTTTTTGCATTTCTTTACTTCAGAGAGAACAATGCGAAAAATGCTCAGTTGGCAAGACTTTCAAGAGAAGAAAGTCTTTCGAATCTGAAGCTTCGAGTGGACCAAAGCAAAGTTATTCCTCTCAGCTCTCTGCGTGGGATTGCTCGTCTGGTAATTTGTGCTGGCCCTGAATCCTTTATCATGGAAGCTTTTAGATCAAGTGAACCTTTCACTGAACAACTTCTAGAACGGGGCGTGGTAGTCGTACCCTTTGCCACAGATGTCAATTCCCTGAATTTTGAGTTTGATGAACGTGAAGATTTGAAGGATGTAACCACCAAAAGAAAAAGACTCTGGCGGTTGACTCCAGTTTACATGCCCGAGTGGTCGGCG MVVSMANISSFNNTGPPPHSPRTRSHNAHNFKFYRLICCRVHWKTVFFSSGPSLAESLRSLQPMRRNLANFTCSAAEKSEISSTAKIRSEVLSPFRSVRMFFYLTFIASGTLGGLIATTQLLAALANSSRAEQVPDILKGLGIDFGAVALFAFLYFRENNAKNAQLARLSREESLSNLKLRVDQSKVIPLSSLRGIARLVICAGPESFIMEAFRSSEPFTEQLLERGVVVVPFATDVNSLNFEFDEREDLKDVTTKRKRLWRLTPVYMPEWSA Homology
BLAST of MS017614 vs. NCBI nr
Match: XP_022131239.1 (protein LOW PSII ACCUMULATION 1, chloroplastic [Momordica charantia] >XP_022131240.1 protein LOW PSII ACCUMULATION 1, chloroplastic [Momordica charantia]) HSP 1 Score: 526.2 bits (1354), Expect = 1.7e-145 Identity = 269/273 (98.53%), Postives = 270/273 (98.90%), Query Frame = 0
BLAST of MS017614 vs. NCBI nr
Match: XP_022963501.1 (protein LOW PSII ACCUMULATION 1, chloroplastic [Cucurbita moschata] >XP_022963502.1 protein LOW PSII ACCUMULATION 1, chloroplastic [Cucurbita moschata]) HSP 1 Score: 440.3 bits (1131), Expect = 1.2e-119 Identity = 227/273 (83.15%), Postives = 247/273 (90.48%), Query Frame = 0
BLAST of MS017614 vs. NCBI nr
Match: KAG6571565.1 (Protein LOW PSII ACCUMULATION 1, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 439.9 bits (1130), Expect = 1.6e-119 Identity = 226/273 (82.78%), Postives = 247/273 (90.48%), Query Frame = 0
BLAST of MS017614 vs. NCBI nr
Match: XP_023554665.1 (protein LOW PSII ACCUMULATION 1, chloroplastic [Cucurbita pepo subsp. pepo] >XP_023554666.1 protein LOW PSII ACCUMULATION 1, chloroplastic [Cucurbita pepo subsp. pepo]) HSP 1 Score: 438.7 bits (1127), Expect = 3.6e-119 Identity = 226/273 (82.78%), Postives = 246/273 (90.11%), Query Frame = 0
BLAST of MS017614 vs. NCBI nr
Match: XP_022967293.1 (protein LOW PSII ACCUMULATION 1, chloroplastic [Cucurbita maxima] >XP_022967294.1 protein LOW PSII ACCUMULATION 1, chloroplastic [Cucurbita maxima]) HSP 1 Score: 438.3 bits (1126), Expect = 4.7e-119 Identity = 225/273 (82.42%), Postives = 246/273 (90.11%), Query Frame = 0
BLAST of MS017614 vs. ExPASy Swiss-Prot
Match: Q9SRY4 (Protein LOW PSII ACCUMULATION 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=LPA1 PE=1 SV=1) HSP 1 Score: 89.0 bits (219), Expect = 9.2e-17 Identity = 48/147 (32.65%), Postives = 80/147 (54.42%), Query Frame = 0
BLAST of MS017614 vs. ExPASy TrEMBL
Match: A0A6J1BP58 (protein LOW PSII ACCUMULATION 1, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111004502 PE=4 SV=1) HSP 1 Score: 526.2 bits (1354), Expect = 8.3e-146 Identity = 269/273 (98.53%), Postives = 270/273 (98.90%), Query Frame = 0
BLAST of MS017614 vs. ExPASy TrEMBL
Match: A0A6J1HGA1 (protein LOW PSII ACCUMULATION 1, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111463810 PE=4 SV=1) HSP 1 Score: 440.3 bits (1131), Expect = 6.0e-120 Identity = 227/273 (83.15%), Postives = 247/273 (90.48%), Query Frame = 0
BLAST of MS017614 vs. ExPASy TrEMBL
Match: A0A6J1HWD0 (protein LOW PSII ACCUMULATION 1, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111466857 PE=4 SV=1) HSP 1 Score: 438.3 bits (1126), Expect = 2.3e-119 Identity = 225/273 (82.42%), Postives = 246/273 (90.11%), Query Frame = 0
BLAST of MS017614 vs. ExPASy TrEMBL
Match: A0A0A0L902 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G621430 PE=4 SV=1) HSP 1 Score: 426.0 bits (1094), Expect = 1.2e-115 Identity = 224/275 (81.45%), Postives = 243/275 (88.36%), Query Frame = 0
BLAST of MS017614 vs. ExPASy TrEMBL
Match: A0A5D3BG35 (Protein LOW PSII ACCUMULATION 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold487G00670 PE=4 SV=1) HSP 1 Score: 418.3 bits (1074), Expect = 2.4e-113 Identity = 220/275 (80.00%), Postives = 241/275 (87.64%), Query Frame = 0
BLAST of MS017614 vs. TAIR 10
Match: AT4G28740.1 (FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3493 (InterPro:IPR021883); BEST Arabidopsis thaliana protein match is: tetratricopeptide repeat (TPR)-containing protein (TAIR:AT1G02910.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). ) HSP 1 Score: 250.4 bits (638), Expect = 1.7e-66 Identity = 139/255 (54.51%), Postives = 183/255 (71.76%), Query Frame = 0
BLAST of MS017614 vs. TAIR 10
Match: AT1G02910.1 (tetratricopeptide repeat (TPR)-containing protein ) HSP 1 Score: 89.0 bits (219), Expect = 6.5e-18 Identity = 48/147 (32.65%), Postives = 80/147 (54.42%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25 Position : 0 Zoom : x 1
Relationships
The following mRNA feature(s) are a part of this gene:
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