![](http://cucurbitgenomics.org/sites/default/files/styles/slideshow/public/carousel/101322_web.jpg?itok=EG-G51x6)
MS017602 (gene) Bitter gourd (TR) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGGAGGATGAGGAGAAGGTTTCACAAGTGGGAGAAAGCAGCAACTTTGAAATGGAACAAGAAGAAATCCCATCAAGAGTCTTCCCCTGTTTGTTCTGTTCAAGAAAGTTTCAAAGCTCTCAGGCCTTAGGAGGCCATCAAAATGCTCACAAGAAAGAGAGGACGGCGGCCAGGAAGGCGAAGCGGATTTCCGACTACGCCCCGACCAATTTCCCGTCACCTTCGCCACCGCCACCGCCACCACCGCCGCCGATCTTTGCAGCTAGTCATACAGGGCTGTGGCCACCTCCAATGTACATTGCTGCTGCTGCTGCTGCTGCACATGCTTCCCATTATCATTGTTTCCCAAATAATCAGATGCTGTGTGATGGCTTGGGAGCTGCCATTGGAGCTGCTCCCAAGTTTGAGAACATGGTTTATTATGGTAGTAGATATCAACAATTTGGGGAAGATGAACAAAATGTGTTGAATTGGCAGAGAAGCATGAAGAAAAATGTTAGTAGGATAGATCATGATAAGGAAAAAGAGAAAAAACTTGATCTCTCTCTCCATCTA ATGGAGGATGAGGAGAAGGTTTCACAAGTGGGAGAAAGCAGCAACTTTGAAATGGAACAAGAAGAAATCCCATCAAGAGTCTTCCCCTGTTTGTTCTGTTCAAGAAAGTTTCAAAGCTCTCAGGCCTTAGGAGGCCATCAAAATGCTCACAAGAAAGAGAGGACGGCGGCCAGGAAGGCGAAGCGGATTTCCGACTACGCCCCGACCAATTTCCCGTCACCTTCGCCACCGCCACCGCCACCACCGCCGCCGATCTTTGCAGCTAGTCATACAGGGCTGTGGCCACCTCCAATGTACATTGCTGCTGCTGCTGCTGCTGCACATGCTTCCCATTATCATTGTTTCCCAAATAATCAGATGCTGTGTGATGGCTTGGGAGCTGCCATTGGAGCTGCTCCCAAGTTTGAGAACATGGTTTATTATGGTAGTAGATATCAACAATTTGGGGAAGATGAACAAAATGTGTTGAATTGGCAGAGAAGCATGAAGAAAAATGTTAGTAGGATAGATCATGATAAGGAAAAAGAGAAAAAACTTGATCTCTCTCTCCATCTA ATGGAGGATGAGGAGAAGGTTTCACAAGTGGGAGAAAGCAGCAACTTTGAAATGGAACAAGAAGAAATCCCATCAAGAGTCTTCCCCTGTTTGTTCTGTTCAAGAAAGTTTCAAAGCTCTCAGGCCTTAGGAGGCCATCAAAATGCTCACAAGAAAGAGAGGACGGCGGCCAGGAAGGCGAAGCGGATTTCCGACTACGCCCCGACCAATTTCCCGTCACCTTCGCCACCGCCACCGCCACCACCGCCGCCGATCTTTGCAGCTAGTCATACAGGGCTGTGGCCACCTCCAATGTACATTGCTGCTGCTGCTGCTGCTGCACATGCTTCCCATTATCATTGTTTCCCAAATAATCAGATGCTGTGTGATGGCTTGGGAGCTGCCATTGGAGCTGCTCCCAAGTTTGAGAACATGGTTTATTATGGTAGTAGATATCAACAATTTGGGGAAGATGAACAAAATGTGTTGAATTGGCAGAGAAGCATGAAGAAAAATGTTAGTAGGATAGATCATGATAAGGAAAAAGAGAAAAAACTTGATCTCTCTCTCCATCTA MEDEEKVSQVGESSNFEMEQEEIPSRVFPCLFCSRKFQSSQALGGHQNAHKKERTAARKAKRISDYAPTNFPSPSPPPPPPPPPIFAASHTGLWPPPMYIAAAAAAAHASHYHCFPNNQMLCDGLGAAIGAAPKFENMVYYGSRYQQFGEDEQNVLNWQRSMKKNVSRIDHDKEKEKKLDLSLHL Homology
BLAST of MS017602 vs. NCBI nr
Match: XP_022159689.1 (protein LATE FLOWERING [Momordica charantia]) HSP 1 Score: 360.5 bits (924), Expect = 8.5e-96 Identity = 183/185 (98.92%), Postives = 183/185 (98.92%), Query Frame = 0
BLAST of MS017602 vs. NCBI nr
Match: XP_038888938.1 (protein LATE FLOWERING [Benincasa hispida]) HSP 1 Score: 204.5 bits (519), Expect = 7.8e-49 Identity = 121/194 (62.37%), Postives = 141/194 (72.68%), Query Frame = 0
BLAST of MS017602 vs. NCBI nr
Match: XP_022996351.1 (protein LATE FLOWERING-like [Cucurbita maxima]) HSP 1 Score: 180.6 bits (457), Expect = 1.2e-41 Identity = 116/195 (59.49%), Postives = 134/195 (68.72%), Query Frame = 0
BLAST of MS017602 vs. NCBI nr
Match: KAG6606329.1 (Protein LATE FLOWERING, partial [Cucurbita argyrosperma subsp. sororia] >KAG7036269.1 Protein LATE FLOWERING, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 179.9 bits (455), Expect = 2.0e-41 Identity = 116/195 (59.49%), Postives = 134/195 (68.72%), Query Frame = 0
BLAST of MS017602 vs. NCBI nr
Match: XP_023532770.1 (protein LATE FLOWERING-like [Cucurbita pepo subsp. pepo]) HSP 1 Score: 178.7 bits (452), Expect = 4.6e-41 Identity = 115/195 (58.97%), Postives = 134/195 (68.72%), Query Frame = 0
BLAST of MS017602 vs. ExPASy Swiss-Prot
Match: Q39263 (Zinc finger protein 4 OS=Arabidopsis thaliana OX=3702 GN=ZFP4 PE=2 SV=2) HSP 1 Score: 71.2 bits (173), Expect = 1.3e-11 Identity = 36/60 (60.00%), Postives = 45/60 (75.00%), Query Frame = 0
BLAST of MS017602 vs. ExPASy Swiss-Prot
Match: Q9FKA9 (Protein LATE FLOWERING OS=Arabidopsis thaliana OX=3702 GN=LATE PE=2 SV=1) HSP 1 Score: 70.5 bits (171), Expect = 2.3e-11 Identity = 65/188 (34.57%), Postives = 92/188 (48.94%), Query Frame = 0
BLAST of MS017602 vs. ExPASy Swiss-Prot
Match: Q39261 (Zinc finger protein 2 OS=Arabidopsis thaliana OX=3702 GN=ZFP2 PE=1 SV=1) HSP 1 Score: 58.9 bits (141), Expect = 6.9e-08 Identity = 26/38 (68.42%), Postives = 31/38 (81.58%), Query Frame = 0
BLAST of MS017602 vs. ExPASy Swiss-Prot
Match: Q9FFX4 (Zinc finger protein KNUCKLES OS=Arabidopsis thaliana OX=3702 GN=KNU PE=1 SV=1) HSP 1 Score: 58.5 bits (140), Expect = 9.0e-08 Identity = 27/54 (50.00%), Postives = 34/54 (62.96%), Query Frame = 0
BLAST of MS017602 vs. ExPASy Swiss-Prot
Match: Q39266 (Zinc finger protein 7 OS=Arabidopsis thaliana OX=3702 GN=ZFP7 PE=1 SV=1) HSP 1 Score: 58.5 bits (140), Expect = 9.0e-08 Identity = 27/39 (69.23%), Postives = 31/39 (79.49%), Query Frame = 0
BLAST of MS017602 vs. ExPASy TrEMBL
Match: A0A6J1E329 (protein LATE FLOWERING OS=Momordica charantia OX=3673 GN=LOC111026032 PE=4 SV=1) HSP 1 Score: 360.5 bits (924), Expect = 4.1e-96 Identity = 183/185 (98.92%), Postives = 183/185 (98.92%), Query Frame = 0
BLAST of MS017602 vs. ExPASy TrEMBL
Match: A0A6J1K4H5 (protein LATE FLOWERING-like OS=Cucurbita maxima OX=3661 GN=LOC111491609 PE=4 SV=1) HSP 1 Score: 180.6 bits (457), Expect = 5.8e-42 Identity = 116/195 (59.49%), Postives = 134/195 (68.72%), Query Frame = 0
BLAST of MS017602 vs. ExPASy TrEMBL
Match: A0A6J1ETH7 (protein LATE FLOWERING OS=Cucurbita moschata OX=3662 GN=LOC111437406 PE=4 SV=1) HSP 1 Score: 177.9 bits (450), Expect = 3.8e-41 Identity = 115/195 (58.97%), Postives = 135/195 (69.23%), Query Frame = 0
BLAST of MS017602 vs. ExPASy TrEMBL
Match: A0A0A0LE19 (C2H2-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G624040 PE=4 SV=1) HSP 1 Score: 169.1 bits (427), Expect = 1.8e-38 Identity = 104/174 (59.77%), Postives = 121/174 (69.54%), Query Frame = 0
BLAST of MS017602 vs. ExPASy TrEMBL
Match: A0A1S3BIU8 (protein LATE FLOWERING-like OS=Cucumis melo OX=3656 GN=LOC103490048 PE=4 SV=1) HSP 1 Score: 164.1 bits (414), Expect = 5.6e-37 Identity = 109/201 (54.23%), Postives = 133/201 (66.17%), Query Frame = 0
BLAST of MS017602 vs. TAIR 10
Match: AT1G66140.1 (zinc finger protein 4 ) HSP 1 Score: 71.2 bits (173), Expect = 9.6e-13 Identity = 36/60 (60.00%), Postives = 45/60 (75.00%), Query Frame = 0
BLAST of MS017602 vs. TAIR 10
Match: AT5G48890.1 (C2H2-like zinc finger protein ) HSP 1 Score: 70.5 bits (171), Expect = 1.6e-12 Identity = 65/188 (34.57%), Postives = 92/188 (48.94%), Query Frame = 0
BLAST of MS017602 vs. TAIR 10
Match: AT5G57520.1 (zinc finger protein 2 ) HSP 1 Score: 58.9 bits (141), Expect = 4.9e-09 Identity = 26/38 (68.42%), Postives = 31/38 (81.58%), Query Frame = 0
BLAST of MS017602 vs. TAIR 10
Match: AT1G24625.1 (zinc finger protein 7 ) HSP 1 Score: 58.5 bits (140), Expect = 6.4e-09 Identity = 27/39 (69.23%), Postives = 31/39 (79.49%), Query Frame = 0
BLAST of MS017602 vs. TAIR 10
Match: AT5G14010.1 (C2H2 and C2HC zinc fingers superfamily protein ) HSP 1 Score: 58.5 bits (140), Expect = 6.4e-09 Identity = 27/54 (50.00%), Postives = 34/54 (62.96%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25 Position : 0 Zoom : x 1
Relationships
The following mRNA feature(s) are a part of this gene:
|