Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: CDS polypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCCAAAGCCGAGGCCGTGGTAGAGGGAGAGGGCGTGGTTGGGGCAGAGGGGGATACGGCAACTACCAAGGGGGATACGGCAACTACCAAGGGGGATATGGCCACTACCAGGGCGGATATGGTCAATACCAAGGCGGATCCGGCAACTACCAAGGTGGATCTG mRNA sequence
ATGGCCAAAGCCGAGGCCGTGGTAGAGGGAGAGGGCGTGGTTGGGGCAGAGGGGGATACGGCAACTACCAAGGGGGATACGGCAACTACCAAGGGGGATATGGCCACTACCAGGGCGGATATGGTCAATACCAAGGCGGATCCGGCAACTACCAAGGTGGATCTG Coding sequence (CDS)
ATGGCCAAAGCCGAGGCCGTGGTAGAGGGAGAGGGCGTGGTTGGGGCAGAGGGGGATACGGCAACTACCAAGGGGGATACGGCAACTACCAAGGGGGATATGGCCACTACCAGGGCGGATATGGTCAATACCAAGGCGGATCCGGCAACTACCAAGGTGGATCTG Protein sequence
MAKAEAVVEGEGVVGAEGDTATTKGDTATTKGDMATTRADMVNTKADPATTKVDL
Homology
BLAST of MS017590 vs. NCBI nr
Match:
KAG7011317.1 (Ribonuclease P protein subunit p25-like protein [Cucurbita argyrosperma subsp. argyrosperma])
HSP 1 Score: 55.8 bits (133), Expect = 1.3e-04
Identity = 36/55 (65.45%), Postives = 37/55 (67.27%), Query Frame = 0
Query: 1 MAKAEAVVEGEGVVGAEGDTATTKGDTATTKGDMATTRADMVNTKADPATTKVDL 56 MAKAE VVEGEGVVG E D T K DTATTK DMATT+ TK TTKV L Sbjct: 134 MAKAEGVVEGEGVVGEEVDMGTIKVDTATTKVDMATTKVATATTKVVLTTTKVVL 188
BLAST of MS017590 vs. ExPASy TrEMBL
Match:
A0A0A0LCB9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G625620 PE=4 SV=1)
HSP 1 Score: 57.4 bits (137), Expect = 2.2e-05
Identity = 35/55 (63.64%), Postives = 36/55 (65.45%), Query Frame = 0
Query: 1 MAKAEAVVEGEGVVGAEGDTATTKGDTATTKGDMATTRADMVNTKADPATTKVDL 56 MAK E VVEGEGVVG E D T K DT TTK D TT+ M TK D TTKVDL Sbjct: 1 MAKEEGVVEGEGVVGEEVDMGTIKVDTETTKVDTVTTKVVMATTKVDRTTTKVDL 55
The following BLAST results are available for this feature:
Match Name E-value Identity Description
KAG7011317.1 1.3e-04 65.45 Ribonuclease P protein subunit p25-like protein [Cucurbita argyrosperma subsp. a... [more]
Match Name E-value Identity Description
Match Name E-value Identity Description
A0A0A0LCB9 2.2e-05 63.64 Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G625620 PE=4 SV=1 [more]
Match Name E-value Identity Description
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25
A T G G C C A A A G C C G A G G C C G T G G T A G A G G G A G A G G G C G T G G T T G G G G C A G A G G G G G A T A C G G C A A C T A C C A A G G G G G A T A C G G C A A C T A C C A A G G G G G A T A T G G C C A C T A C C A G G G C G G A T A T G G T C A A T A C C A A G G C G G A T C C G G C A A C T A C C A A G G T G G A T C T G 20 40 60 80 100 120 140 160 Expect = 3.2E-5 / Score = 25.8 Score = Sequence G3DSA:1.20.5.170 mobidb-lite
IPR Term IPR Description Source Source Term Source Description Alignment
None No IPR available GENE3D 1.20.5.170 coord: 13..55 e-value: 3.2E-5 score: 25.8
None No IPR available MOBIDB_LITE mobidb-lite disorder_prediction coord: 1..34
Relationships
The following mRNA feature(s) are a part of this gene:
Feature Name Unique Name Type
MS017590.1 MS017590.1 mRNA