MS017442 (gene) Bitter gourd (TR) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.TTTAGAAGTTTCAATCGAATCTTGACTCCAACAGATCCACTATTTTTTCTATTCAAGGATCAATATCTTTACATGGAGAATTCTTTACAGATGAAGAGATGTCAAAGGGACTACTTACTTCCCAAATAGATCTGCTACATCTATATATTAACATTGGTTTATCAAGAATAGGCAAGAAAAACACTTCAAATTGTTGATTCTATCACCAGAGATGGCTTAGAACCACTAGTTCATTATCTAATGGATTTTTC TTTAGAAGTTTCAATCGAATCTTGACTCCAACAGATCCACTATTTTTTCTATTCAAGGATCAATATCATGGAGAATTCTTTACAGATGAAGAGATGTCAAAGGGACTACTTACTTCCCAAATAGATCTGCTACATCTATATCATTGGTTTATCAAGAATAGGCAAGAAAAACACTTCAAATTGTTGATTCACCAGAGATGGCTTAGAACCACTAGTTCATTATCTAATGGATTTTTC TTTAGAAGTTTCAATCGAATCTTGACTCCAACAGATCCACTATTTTTTCTATTCAAGGATCAATATCATGGAGAATTCTTTACAGATGAAGAGATGTCAAAGGGACTACTTACTTCCCAAATAGATCTGCTACATCTATATCATTGGTTTATCAAGAATAGGCAAGAAAAACACTTCAAATTGTTGATTCACCAGAGATGGCTTAGAACCACTAGTTCATTATCTAATGGATTTTTC FRSFNRILTPTDPLFFLFKDQYHGEFFTDEEMSKGLLTSQIDLLHLYHWFIKNRQEKHFKLLIHQRWLRTTSSLSNGFF Homology
BLAST of MS017442 vs. NCBI nr
Match: YP_009868859.1 (Ycf2 [Spatholobus pulcher] >QKI32384.1 Ycf2 [Spatholobus pulcher]) HSP 1 Score: 107.1 bits (266), Expect = 7.2e-20 Identity = 61/88 (69.32%), Postives = 64/88 (72.73%), Query Frame = 0
BLAST of MS017442 vs. NCBI nr
Match: QRI60548.1 (hypothetical chloroplast RF21 [Hardenbergia violacea] >QRI60565.1 hypothetical chloroplast RF21 [Hardenbergia violacea]) HSP 1 Score: 106.7 bits (265), Expect = 9.4e-20 Identity = 60/88 (68.18%), Postives = 64/88 (72.73%), Query Frame = 0
BLAST of MS017442 vs. NCBI nr
Match: YP_009468904.1 (hypothetical chloroplast RF2 [Gynostemma compressum] >YP_009468924.1 hypothetical chloroplast RF2 [Gynostemma compressum] >AVA29805.1 hypothetical chloroplast RF2 [Gynostemma compressum] >AVA29806.1 hypothetical chloroplast RF2 [Gynostemma compressum]) HSP 1 Score: 106.7 bits (265), Expect = 9.4e-20 Identity = 62/88 (70.45%), Postives = 63/88 (71.59%), Query Frame = 0
BLAST of MS017442 vs. NCBI nr
Match: YP_009439847.1 (hypothetical chloroplast RF2 [Gynostemma laxiflorum] >YP_009439867.1 hypothetical chloroplast RF2 [Gynostemma laxiflorum] >YP_010015182.1 hypothetical chloroplast RF2 [Gynostemma yixingense] >YP_010015202.1 hypothetical chloroplast RF2 [Gynostemma yixingense] >ATG86627.1 hypothetical chloroplast RF2 [Gynostemma laxiflorum] >ATG86628.1 hypothetical chloroplast RF2 [Gynostemma laxiflorum] >QOI14307.1 hypothetical chloroplast RF2 [Gynostemma yixingense] >QOI14327.1 hypothetical chloroplast RF2 [Gynostemma yixingense]) HSP 1 Score: 106.7 bits (265), Expect = 9.4e-20 Identity = 62/88 (70.45%), Postives = 63/88 (71.59%), Query Frame = 0
BLAST of MS017442 vs. NCBI nr
Match: YP_009772211.1 (hypothetical chloroplast RF21 [Zornia diphylla] >YP_009772228.1 hypothetical chloroplast RF21 [Zornia diphylla] >QIT03079.1 hypothetical chloroplast RF21 [Zornia diphylla] >QIT03096.1 hypothetical chloroplast RF21 [Zornia diphylla]) HSP 1 Score: 106.7 bits (265), Expect = 9.4e-20 Identity = 61/88 (69.32%), Postives = 64/88 (72.73%), Query Frame = 0
BLAST of MS017442 vs. ExPASy Swiss-Prot
Match: Q49KT6 (Protein Ycf2 OS=Eucalyptus globulus subsp. globulus OX=71271 GN=ycf2-A PE=3 SV=1) HSP 1 Score: 103.6 bits (257), Expect = 1.0e-21 Identity = 60/88 (68.18%), Postives = 62/88 (70.45%), Query Frame = 0
BLAST of MS017442 vs. ExPASy Swiss-Prot
Match: B1A978 (Protein Ycf2 OS=Carica papaya OX=3649 GN=ycf2-A PE=3 SV=1) HSP 1 Score: 103.2 bits (256), Expect = 1.4e-21 Identity = 60/88 (68.18%), Postives = 62/88 (70.45%), Query Frame = 0
BLAST of MS017442 vs. ExPASy Swiss-Prot
Match: Q2PMM5 (Protein Ycf2 OS=Glycine max OX=3847 GN=ycf2-A PE=3 SV=1) HSP 1 Score: 103.2 bits (256), Expect = 1.4e-21 Identity = 59/88 (67.05%), Postives = 63/88 (71.59%), Query Frame = 0
BLAST of MS017442 vs. ExPASy Swiss-Prot
Match: Q14F97 (Protein Ycf2 OS=Populus alba OX=43335 GN=ycf2-A PE=3 SV=1) HSP 1 Score: 102.8 bits (255), Expect = 1.8e-21 Identity = 60/88 (68.18%), Postives = 62/88 (70.45%), Query Frame = 0
BLAST of MS017442 vs. ExPASy Swiss-Prot
Match: A4GYV4 (Protein Ycf2 OS=Populus trichocarpa OX=3694 GN=ycf2-1 PE=3 SV=1) HSP 1 Score: 102.8 bits (255), Expect = 1.8e-21 Identity = 60/88 (68.18%), Postives = 62/88 (70.45%), Query Frame = 0
BLAST of MS017442 vs. ExPASy TrEMBL
Match: A0A6M8PWJ8 (Protein Ycf2 OS=Spatholobus pulcher OX=1341721 GN=ycf2 PE=3 SV=1) HSP 1 Score: 107.1 bits (266), Expect = 3.5e-20 Identity = 61/88 (69.32%), Postives = 64/88 (72.73%), Query Frame = 0
BLAST of MS017442 vs. ExPASy TrEMBL
Match: A0A191T4A7 (Protein Ycf2 OS=Gynostemma pentaphyllum OX=182084 GN=ycf2 PE=3 SV=1) HSP 1 Score: 106.7 bits (265), Expect = 4.6e-20 Identity = 62/88 (70.45%), Postives = 63/88 (71.59%), Query Frame = 0
BLAST of MS017442 vs. ExPASy TrEMBL
Match: A0A291IAJ3 (Protein Ycf2 OS=Gynostemma caulopterum OX=1592219 GN=ycf2 PE=3 SV=1) HSP 1 Score: 106.7 bits (265), Expect = 4.6e-20 Identity = 62/88 (70.45%), Postives = 63/88 (71.59%), Query Frame = 0
BLAST of MS017442 vs. ExPASy TrEMBL
Match: A0A286QM47 (Protein Ycf2 OS=Gynostemma pentaphyllum OX=182084 GN=ycf2 PE=3 SV=1) HSP 1 Score: 106.7 bits (265), Expect = 4.6e-20 Identity = 62/88 (70.45%), Postives = 63/88 (71.59%), Query Frame = 0
BLAST of MS017442 vs. ExPASy TrEMBL
Match: A0A291IAS5 (Protein Ycf2 OS=Gynostemma pentagynum OX=555432 GN=ycf2 PE=3 SV=1) HSP 1 Score: 106.7 bits (265), Expect = 4.6e-20 Identity = 62/88 (70.45%), Postives = 63/88 (71.59%), Query Frame = 0
BLAST of MS017442 vs. TAIR 10
Match: ATCG00860.1 (Chloroplast Ycf2;ATPase, AAA type, core ) HSP 1 Score: 100.1 bits (248), Expect = 8.2e-22 Identity = 59/88 (67.05%), Postives = 61/88 (69.32%), Query Frame = 0
BLAST of MS017442 vs. TAIR 10
Match: ATCG01280.1 (Chloroplast Ycf2;ATPase, AAA type, core ) HSP 1 Score: 100.1 bits (248), Expect = 8.2e-22 Identity = 59/88 (67.05%), Postives = 61/88 (69.32%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
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