MS017442 (gene) Bitter gourd (TR) v1

Overview
NameMS017442
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionProtein Ycf2
Locationscaffold435: 203469 .. 203719 (+)
RNA-Seq ExpressionMS017442
SyntenyMS017442
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
TTTAGAAGTTTCAATCGAATCTTGACTCCAACAGATCCACTATTTTTTCTATTCAAGGATCAATATCTTTACATGGAGAATTCTTTACAGATGAAGAGATGTCAAAGGGACTACTTACTTCCCAAATAGATCTGCTACATCTATATATTAACATTGGTTTATCAAGAATAGGCAAGAAAAACACTTCAAATTGTTGATTCTATCACCAGAGATGGCTTAGAACCACTAGTTCATTATCTAATGGATTTTTC

mRNA sequence

TTTAGAAGTTTCAATCGAATCTTGACTCCAACAGATCCACTATTTTTTCTATTCAAGGATCAATATCATGGAGAATTCTTTACAGATGAAGAGATGTCAAAGGGACTACTTACTTCCCAAATAGATCTGCTACATCTATATCATTGGTTTATCAAGAATAGGCAAGAAAAACACTTCAAATTGTTGATTCACCAGAGATGGCTTAGAACCACTAGTTCATTATCTAATGGATTTTTC

Coding sequence (CDS)

TTTAGAAGTTTCAATCGAATCTTGACTCCAACAGATCCACTATTTTTTCTATTCAAGGATCAATATCATGGAGAATTCTTTACAGATGAAGAGATGTCAAAGGGACTACTTACTTCCCAAATAGATCTGCTACATCTATATCATTGGTTTATCAAGAATAGGCAAGAAAAACACTTCAAATTGTTGATTCACCAGAGATGGCTTAGAACCACTAGTTCATTATCTAATGGATTTTTC

Protein sequence

FRSFNRILTPTDPLFFLFKDQYHGEFFTDEEMSKGLLTSQIDLLHLYHWFIKNRQEKHFKLLIHQRWLRTTSSLSNGFF
Homology
BLAST of MS017442 vs. NCBI nr
Match: YP_009868859.1 (Ycf2 [Spatholobus pulcher] >QKI32384.1 Ycf2 [Spatholobus pulcher])

HSP 1 Score: 107.1 bits (266), Expect = 7.2e-20
Identity = 61/88 (69.32%), Postives = 64/88 (72.73%), Query Frame = 0

Query: 1    FRSFNRILTPTDPLFFLFKDQ------YHGEFFTDEEMSKGLLTSQIDL-LHLY-HWFIK 60
            FR    I  P DPLFFLFKDQ       H +FFTDEEM +GLLTSQ DL   LY HWFIK
Sbjct: 2163 FRISQFIWDPADPLFFLFKDQPFVSVFSHRQFFTDEEMLRGLLTSQTDLPTSLYKHWFIK 2222

Query: 61   NRQEKHFKLLIH-QRWLRTTSSLSNGFF 80
            N QEKHF+LLIH QRWLRT SSLSNGFF
Sbjct: 2223 NTQEKHFELLIHCQRWLRTNSSLSNGFF 2250

BLAST of MS017442 vs. NCBI nr
Match: QRI60548.1 (hypothetical chloroplast RF21 [Hardenbergia violacea] >QRI60565.1 hypothetical chloroplast RF21 [Hardenbergia violacea])

HSP 1 Score: 106.7 bits (265), Expect = 9.4e-20
Identity = 60/88 (68.18%), Postives = 64/88 (72.73%), Query Frame = 0

Query: 1    FRSFNRILTPTDPLFFLFKDQ------YHGEFFTDEEMSKGLLTSQIDL-LHLY-HWFIK 60
            FR    I  P DPLFFLFKDQ       H +FF DEEMS+GLLTSQ DL   +Y HWFIK
Sbjct: 2150 FRISQFIWDPADPLFFLFKDQSFVSVFSHRQFFADEEMSRGLLTSQTDLPTSIYKHWFIK 2209

Query: 61   NRQEKHFKLLIH-QRWLRTTSSLSNGFF 80
            N QEKHF+LLIH QRWLRT SSLSNGFF
Sbjct: 2210 NTQEKHFELLIHCQRWLRTNSSLSNGFF 2237

BLAST of MS017442 vs. NCBI nr
Match: YP_009468904.1 (hypothetical chloroplast RF2 [Gynostemma compressum] >YP_009468924.1 hypothetical chloroplast RF2 [Gynostemma compressum] >AVA29805.1 hypothetical chloroplast RF2 [Gynostemma compressum] >AVA29806.1 hypothetical chloroplast RF2 [Gynostemma compressum])

HSP 1 Score: 106.7 bits (265), Expect = 9.4e-20
Identity = 62/88 (70.45%), Postives = 63/88 (71.59%), Query Frame = 0

Query: 1    FRSFNRILTPTDPLFFLFKDQ------YHGEFFTDEEMSKGLLTSQIDL-LHLY-HWFIK 60
            FR    I  P DPLFFLFKDQ       H EFF DEEMSKGLLTSQ DL   +Y  WFIK
Sbjct: 2146 FRISQFIWDPADPLFFLFKDQPFVSVFSHREFFADEEMSKGLLTSQTDLPTSIYKRWFIK 2205

Query: 61   NRQEKHFKLLIH-QRWLRTTSSLSNGFF 80
            N QEKHF LLIH QRWLRTTSSLSNGFF
Sbjct: 2206 NTQEKHFGLLIHRQRWLRTTSSLSNGFF 2233

BLAST of MS017442 vs. NCBI nr
Match: YP_009439847.1 (hypothetical chloroplast RF2 [Gynostemma laxiflorum] >YP_009439867.1 hypothetical chloroplast RF2 [Gynostemma laxiflorum] >YP_010015182.1 hypothetical chloroplast RF2 [Gynostemma yixingense] >YP_010015202.1 hypothetical chloroplast RF2 [Gynostemma yixingense] >ATG86627.1 hypothetical chloroplast RF2 [Gynostemma laxiflorum] >ATG86628.1 hypothetical chloroplast RF2 [Gynostemma laxiflorum] >QOI14307.1 hypothetical chloroplast RF2 [Gynostemma yixingense] >QOI14327.1 hypothetical chloroplast RF2 [Gynostemma yixingense])

HSP 1 Score: 106.7 bits (265), Expect = 9.4e-20
Identity = 62/88 (70.45%), Postives = 63/88 (71.59%), Query Frame = 0

Query: 1    FRSFNRILTPTDPLFFLFKDQ------YHGEFFTDEEMSKGLLTSQIDL-LHLY-HWFIK 60
            FR    I  P DPLFFLFKDQ       H EFF DEEMSKGLLTSQ DL   +Y  WFIK
Sbjct: 2146 FRISQFIWDPADPLFFLFKDQPFVSVFSHREFFADEEMSKGLLTSQTDLPTSIYKRWFIK 2205

Query: 61   NRQEKHFKLLIH-QRWLRTTSSLSNGFF 80
            N QEKHF LLIH QRWLRTTSSLSNGFF
Sbjct: 2206 NTQEKHFGLLIHRQRWLRTTSSLSNGFF 2233

BLAST of MS017442 vs. NCBI nr
Match: YP_009772211.1 (hypothetical chloroplast RF21 [Zornia diphylla] >YP_009772228.1 hypothetical chloroplast RF21 [Zornia diphylla] >QIT03079.1 hypothetical chloroplast RF21 [Zornia diphylla] >QIT03096.1 hypothetical chloroplast RF21 [Zornia diphylla])

HSP 1 Score: 106.7 bits (265), Expect = 9.4e-20
Identity = 61/88 (69.32%), Postives = 64/88 (72.73%), Query Frame = 0

Query: 1    FRSFNRILTPTDPLFFLFKDQ------YHGEFFTDEEMSKGLLTSQIDL-LHLY-HWFIK 60
            FR    I  PTDPLFFLFKDQ       H EFF DEEMS+GLLTSQ DL   +Y  WFIK
Sbjct: 2132 FRISQFIWDPTDPLFFLFKDQPFVSVFSHREFFADEEMSRGLLTSQTDLPTSIYKRWFIK 2191

Query: 61   NRQEKHFKLLIH-QRWLRTTSSLSNGFF 80
            N QEKHF+LLIH QRWLRT SSLSNGFF
Sbjct: 2192 NTQEKHFELLIHRQRWLRTNSSLSNGFF 2219

BLAST of MS017442 vs. ExPASy Swiss-Prot
Match: Q49KT6 (Protein Ycf2 OS=Eucalyptus globulus subsp. globulus OX=71271 GN=ycf2-A PE=3 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 1.0e-21
Identity = 60/88 (68.18%), Postives = 62/88 (70.45%), Query Frame = 0

Query: 1    FRSFNRILTPTDPLFFLFKDQ------YHGEFFTDEEMSKGLLTSQIDL-LHLY-HWFIK 60
            FR    I  P DPLFFLFKDQ       H EFF DEEMSKGLLTSQ D    +Y  WFIK
Sbjct: 2147 FRISQFIWDPADPLFFLFKDQPFVSVFSHREFFADEEMSKGLLTSQTDSPTSIYKRWFIK 2206

Query: 61   NRQEKHFKLLIH-QRWLRTTSSLSNGFF 80
            N QEKHF+LLIH QRWLRT SSLSNGFF
Sbjct: 2207 NTQEKHFELLIHRQRWLRTNSSLSNGFF 2234

BLAST of MS017442 vs. ExPASy Swiss-Prot
Match: B1A978 (Protein Ycf2 OS=Carica papaya OX=3649 GN=ycf2-A PE=3 SV=1)

HSP 1 Score: 103.2 bits (256), Expect = 1.4e-21
Identity = 60/88 (68.18%), Postives = 62/88 (70.45%), Query Frame = 0

Query: 1    FRSFNRILTPTDPLFFLFKDQ------YHGEFFTDEEMSKGLLTSQID-LLHLY-HWFIK 60
            FR    I  P DPLFFLFKDQ       H EFF DEEMSKGLLTSQ D    +Y  WFIK
Sbjct: 2165 FRISQFIWDPADPLFFLFKDQPFVSVFSHREFFADEEMSKGLLTSQTDPPTSIYKRWFIK 2224

Query: 61   NRQEKHFKLLIH-QRWLRTTSSLSNGFF 80
            N QEKHF+LLIH QRWLRT SSLSNGFF
Sbjct: 2225 NTQEKHFELLIHRQRWLRTNSSLSNGFF 2252

BLAST of MS017442 vs. ExPASy Swiss-Prot
Match: Q2PMM5 (Protein Ycf2 OS=Glycine max OX=3847 GN=ycf2-A PE=3 SV=1)

HSP 1 Score: 103.2 bits (256), Expect = 1.4e-21
Identity = 59/88 (67.05%), Postives = 63/88 (71.59%), Query Frame = 0

Query: 1    FRSFNRILTPTDPLFFLFKDQ------YHGEFFTDEEMSKGLLTSQIDL-LHLY-HWFIK 60
            FR    I  P DPLFFLFKDQ       H +FFTDEEMS+ LLTSQ DL   +Y HWFIK
Sbjct: 2147 FRISQFIWDPADPLFFLFKDQPFVSVFSHRQFFTDEEMSRELLTSQTDLPTSIYKHWFIK 2206

Query: 61   NRQEKHFKLLIH-QRWLRTTSSLSNGFF 80
            N QEKHF+LLIH QRWLR  SSLSNGFF
Sbjct: 2207 NTQEKHFELLIHCQRWLRINSSLSNGFF 2234

BLAST of MS017442 vs. ExPASy Swiss-Prot
Match: Q14F97 (Protein Ycf2 OS=Populus alba OX=43335 GN=ycf2-A PE=3 SV=1)

HSP 1 Score: 102.8 bits (255), Expect = 1.8e-21
Identity = 60/88 (68.18%), Postives = 62/88 (70.45%), Query Frame = 0

Query: 1    FRSFNRILTPTDPLFFLFKDQ------YHGEFFTDEEMSKGLLTSQID-LLHLY-HWFIK 60
            FR    I  P DPLFFLFKDQ       H EFF DEEMSKGLLTSQ D    +Y  WFIK
Sbjct: 2149 FRISQFIWDPADPLFFLFKDQPLVSVFSHREFFADEEMSKGLLTSQTDPPTSIYKRWFIK 2208

Query: 61   NRQEKHFKLLIH-QRWLRTTSSLSNGFF 80
            N QEKHF+LLIH QRWLRT SSLSNGFF
Sbjct: 2209 NTQEKHFELLIHRQRWLRTKSSLSNGFF 2236

BLAST of MS017442 vs. ExPASy Swiss-Prot
Match: A4GYV4 (Protein Ycf2 OS=Populus trichocarpa OX=3694 GN=ycf2-1 PE=3 SV=1)

HSP 1 Score: 102.8 bits (255), Expect = 1.8e-21
Identity = 60/88 (68.18%), Postives = 62/88 (70.45%), Query Frame = 0

Query: 1    FRSFNRILTPTDPLFFLFKDQ------YHGEFFTDEEMSKGLLTSQID-LLHLY-HWFIK 60
            FR    I  P DPLFFLFKDQ       H EFF DEEMSKGLLTSQ D    +Y  WFIK
Sbjct: 2152 FRISQFIWDPADPLFFLFKDQPLVSVFSHREFFADEEMSKGLLTSQTDPPTSIYKRWFIK 2211

Query: 61   NRQEKHFKLLIH-QRWLRTTSSLSNGFF 80
            N QEKHF+LLIH QRWLRT SSLSNGFF
Sbjct: 2212 NTQEKHFELLIHRQRWLRTKSSLSNGFF 2239

BLAST of MS017442 vs. ExPASy TrEMBL
Match: A0A6M8PWJ8 (Protein Ycf2 OS=Spatholobus pulcher OX=1341721 GN=ycf2 PE=3 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 3.5e-20
Identity = 61/88 (69.32%), Postives = 64/88 (72.73%), Query Frame = 0

Query: 1    FRSFNRILTPTDPLFFLFKDQ------YHGEFFTDEEMSKGLLTSQIDL-LHLY-HWFIK 60
            FR    I  P DPLFFLFKDQ       H +FFTDEEM +GLLTSQ DL   LY HWFIK
Sbjct: 2163 FRISQFIWDPADPLFFLFKDQPFVSVFSHRQFFTDEEMLRGLLTSQTDLPTSLYKHWFIK 2222

Query: 61   NRQEKHFKLLIH-QRWLRTTSSLSNGFF 80
            N QEKHF+LLIH QRWLRT SSLSNGFF
Sbjct: 2223 NTQEKHFELLIHCQRWLRTNSSLSNGFF 2250

BLAST of MS017442 vs. ExPASy TrEMBL
Match: A0A191T4A7 (Protein Ycf2 OS=Gynostemma pentaphyllum OX=182084 GN=ycf2 PE=3 SV=1)

HSP 1 Score: 106.7 bits (265), Expect = 4.6e-20
Identity = 62/88 (70.45%), Postives = 63/88 (71.59%), Query Frame = 0

Query: 1    FRSFNRILTPTDPLFFLFKDQ------YHGEFFTDEEMSKGLLTSQIDL-LHLY-HWFIK 60
            FR    I  P DPLFFLFKDQ       H EFF DEEMSKGLLTSQ DL   +Y  WFIK
Sbjct: 2146 FRISQFIWDPADPLFFLFKDQPFVSVFSHREFFADEEMSKGLLTSQTDLPTSIYKRWFIK 2205

Query: 61   NRQEKHFKLLIH-QRWLRTTSSLSNGFF 80
            N QEKHF LLIH QRWLRTTSSLSNGFF
Sbjct: 2206 NTQEKHFGLLIHRQRWLRTTSSLSNGFF 2233

BLAST of MS017442 vs. ExPASy TrEMBL
Match: A0A291IAJ3 (Protein Ycf2 OS=Gynostemma caulopterum OX=1592219 GN=ycf2 PE=3 SV=1)

HSP 1 Score: 106.7 bits (265), Expect = 4.6e-20
Identity = 62/88 (70.45%), Postives = 63/88 (71.59%), Query Frame = 0

Query: 1    FRSFNRILTPTDPLFFLFKDQ------YHGEFFTDEEMSKGLLTSQIDL-LHLY-HWFIK 60
            FR    I  P DPLFFLFKDQ       H EFF DEEMSKGLLTSQ DL   +Y  WFIK
Sbjct: 2146 FRISQFIWDPADPLFFLFKDQPFVSVFSHREFFADEEMSKGLLTSQTDLPTSIYKRWFIK 2205

Query: 61   NRQEKHFKLLIH-QRWLRTTSSLSNGFF 80
            N QEKHF LLIH QRWLRTTSSLSNGFF
Sbjct: 2206 NTQEKHFGLLIHRQRWLRTTSSLSNGFF 2233

BLAST of MS017442 vs. ExPASy TrEMBL
Match: A0A286QM47 (Protein Ycf2 OS=Gynostemma pentaphyllum OX=182084 GN=ycf2 PE=3 SV=1)

HSP 1 Score: 106.7 bits (265), Expect = 4.6e-20
Identity = 62/88 (70.45%), Postives = 63/88 (71.59%), Query Frame = 0

Query: 1    FRSFNRILTPTDPLFFLFKDQ------YHGEFFTDEEMSKGLLTSQIDL-LHLY-HWFIK 60
            FR    I  P DPLFFLFKDQ       H EFF DEEMSKGLLTSQ DL   +Y  WFIK
Sbjct: 2146 FRISQFIWDPADPLFFLFKDQPFVSVFSHREFFADEEMSKGLLTSQTDLPTSIYKRWFIK 2205

Query: 61   NRQEKHFKLLIH-QRWLRTTSSLSNGFF 80
            N QEKHF LLIH QRWLRTTSSLSNGFF
Sbjct: 2206 NTQEKHFGLLIHRQRWLRTTSSLSNGFF 2233

BLAST of MS017442 vs. ExPASy TrEMBL
Match: A0A291IAS5 (Protein Ycf2 OS=Gynostemma pentagynum OX=555432 GN=ycf2 PE=3 SV=1)

HSP 1 Score: 106.7 bits (265), Expect = 4.6e-20
Identity = 62/88 (70.45%), Postives = 63/88 (71.59%), Query Frame = 0

Query: 1    FRSFNRILTPTDPLFFLFKDQ------YHGEFFTDEEMSKGLLTSQIDL-LHLY-HWFIK 60
            FR    I  P DPLFFLFKDQ       H EFF DEEMSKGLLTSQ DL   +Y  WFIK
Sbjct: 2146 FRISQFIWDPADPLFFLFKDQPFVSVFSHREFFADEEMSKGLLTSQTDLPTSIYKRWFIK 2205

Query: 61   NRQEKHFKLLIH-QRWLRTTSSLSNGFF 80
            N QEKHF LLIH QRWLRTTSSLSNGFF
Sbjct: 2206 NTQEKHFGLLIHRQRWLRTTSSLSNGFF 2233

BLAST of MS017442 vs. TAIR 10
Match: ATCG00860.1 (Chloroplast Ycf2;ATPase, AAA type, core )

HSP 1 Score: 100.1 bits (248), Expect = 8.2e-22
Identity = 59/88 (67.05%), Postives = 61/88 (69.32%), Query Frame = 0

Query: 1    FRSFNRILTPTDPLFFLFKDQ------YHGEFFTDEEMSKGLLTSQID-LLHLY-HWFIK 60
            FR    I  P DPLFFLFKDQ       H EFF DEEMSKGLLTSQ D    +Y  WFIK
Sbjct: 2161 FRISQFIWDPADPLFFLFKDQPFVSVFSHREFFADEEMSKGLLTSQTDPPTSIYKRWFIK 2220

Query: 61   NRQEKHFKLLI-HQRWLRTTSSLSNGFF 80
            N QEKHF+LLI  QRWLRT SSLSNGFF
Sbjct: 2221 NTQEKHFELLIQRQRWLRTNSSLSNGFF 2248

BLAST of MS017442 vs. TAIR 10
Match: ATCG01280.1 (Chloroplast Ycf2;ATPase, AAA type, core )

HSP 1 Score: 100.1 bits (248), Expect = 8.2e-22
Identity = 59/88 (67.05%), Postives = 61/88 (69.32%), Query Frame = 0

Query: 1    FRSFNRILTPTDPLFFLFKDQ------YHGEFFTDEEMSKGLLTSQID-LLHLY-HWFIK 60
            FR    I  P DPLFFLFKDQ       H EFF DEEMSKGLLTSQ D    +Y  WFIK
Sbjct: 2161 FRISQFIWDPADPLFFLFKDQPFVSVFSHREFFADEEMSKGLLTSQTDPPTSIYKRWFIK 2220

Query: 61   NRQEKHFKLLI-HQRWLRTTSSLSNGFF 80
            N QEKHF+LLI  QRWLRT SSLSNGFF
Sbjct: 2221 NTQEKHFELLIQRQRWLRTNSSLSNGFF 2248

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
YP_009868859.17.2e-2069.32Ycf2 [Spatholobus pulcher] >QKI32384.1 Ycf2 [Spatholobus pulcher][more]
QRI60548.19.4e-2068.18hypothetical chloroplast RF21 [Hardenbergia violacea] >QRI60565.1 hypothetical c... [more]
YP_009468904.19.4e-2070.45hypothetical chloroplast RF2 [Gynostemma compressum] >YP_009468924.1 hypothetica... [more]
YP_009439847.19.4e-2070.45hypothetical chloroplast RF2 [Gynostemma laxiflorum] >YP_009439867.1 hypothetica... [more]
YP_009772211.19.4e-2069.32hypothetical chloroplast RF21 [Zornia diphylla] >YP_009772228.1 hypothetical chl... [more]
Match NameE-valueIdentityDescription
Q49KT61.0e-2168.18Protein Ycf2 OS=Eucalyptus globulus subsp. globulus OX=71271 GN=ycf2-A PE=3 SV=1[more]
B1A9781.4e-2168.18Protein Ycf2 OS=Carica papaya OX=3649 GN=ycf2-A PE=3 SV=1[more]
Q2PMM51.4e-2167.05Protein Ycf2 OS=Glycine max OX=3847 GN=ycf2-A PE=3 SV=1[more]
Q14F971.8e-2168.18Protein Ycf2 OS=Populus alba OX=43335 GN=ycf2-A PE=3 SV=1[more]
A4GYV41.8e-2168.18Protein Ycf2 OS=Populus trichocarpa OX=3694 GN=ycf2-1 PE=3 SV=1[more]
Match NameE-valueIdentityDescription
A0A6M8PWJ83.5e-2069.32Protein Ycf2 OS=Spatholobus pulcher OX=1341721 GN=ycf2 PE=3 SV=1[more]
A0A191T4A74.6e-2070.45Protein Ycf2 OS=Gynostemma pentaphyllum OX=182084 GN=ycf2 PE=3 SV=1[more]
A0A291IAJ34.6e-2070.45Protein Ycf2 OS=Gynostemma caulopterum OX=1592219 GN=ycf2 PE=3 SV=1[more]
A0A286QM474.6e-2070.45Protein Ycf2 OS=Gynostemma pentaphyllum OX=182084 GN=ycf2 PE=3 SV=1[more]
A0A291IAS54.6e-2070.45Protein Ycf2 OS=Gynostemma pentagynum OX=555432 GN=ycf2 PE=3 SV=1[more]
Match NameE-valueIdentityDescription
ATCG00860.18.2e-2267.05Chloroplast Ycf2;ATPase, AAA type, core [more]
ATCG01280.18.2e-2267.05Chloroplast Ycf2;ATPase, AAA type, core [more]
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR33078PROTEIN YCF2-RELATEDcoord: 4..79
NoneNo IPR availablePANTHERPTHR33078:SF55PROTEIN YCF2coord: 4..79

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS017442.1MS017442.1mRNA