MS017073 (gene) Bitter gourd (TR) v1

Overview


Name	MS017073
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Superoxide dismutase [Cu-Zn]
Location	scaffold197: 1251350 .. 1252505 (+)
RNA-Seq Expression	MS017073
Synteny	MS017073

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTTCTCTCAAAGCCGTGGCGCTCATCGCCGGAGGAGATTCCAACATCAGAGGCTCCATTCAGTTCTTTCAGGACCCAAATGGTCTGTGTTTTCGTCTCAGATTTCTTGTTTTCTCTTGTTTTTTGCTCAATTTCCGAAAGGGGTTTTCGAGATTCGAGGTGGGTTTTCGTTATTGTCAATTGAATTGAACTTATGAACATGAACAGGGGCGACCCATGTCGAAGGTAAAATCACCGGTCTCTCACCTGGACTCCATGGCTTCCATATCCACTCTCTCGGTGATACCACAAATGGCTGCAACTCTACTGGTAATCACTAATCTCTCTCTCCCAAAATTCTTCTCGTTCTGCTGCCTGAATCGTCTTTTTTTGCTTGTTTTCTTCTTCTTCTTCTTTTAGGGCCTCATTTTAATCCGCTGAAGAAGGGGCATGGAGCTCCTGGGGATGTAGAACGTCATGCTGGAGATTTGGGTAACATCTATGCTGGTCCAGATGGTATGTGGAGTTTCTGCTTCTTGTTTTTCTGTTGAAATGTTAGTGAGAAATACAGATACAAGTTCTGCTTCTTCCTTGTTTGACATTTAGCAGTGGCATGTTTCAGGGGTTGCTGAAGTTTCCATTACAGATAGGCTGGTAAGTTTGTCGAACAGATTGGTAATTGGATAATCCTTGTTAGTGTTTCTTCTTATTTTGTAGGTTGTTCAATCAATCCCGTTTCTAGGTTGCTAATCCTTAAAAATTTTCTACGATGTAAGTTGTAGCTTATGTTTCCATTTTGCTCCTGTTTTGATGTGTAGATTTCTCTGAAGGGACCTCATTCAATACTAGGCCGAGCGGTAGTCGTGCACGCTGATCCGGATGATCTTGGCAAAGGTAAAAGCCTGTTTTTGGATTGGTTTAAATCCAATTTTGGTCTTTGTACTTTTAGGTTCATCCCTAAACTTTCAAGCATTCTGTCCGTGAACTTTCACGCATGTTCTATTGATCAGTTACAAAGATTATGTTTGAATGATGATTTTATTATTGTCATTCACACATCATTTCGTCCTTTCATCGTTGGTTCTTTGTGGCTTAATTTATACTTGTTGATGCAATAGGAGGGCATGAACTTAGCAAGACTACTGGAAATGCTGGTGCAAGAGTCGGATGCGGT

mRNA sequence

ATGGGTTCTCTCAAAGCCGTGGCGCTCATCGCCGGAGGAGATTCCAACATCAGAGGCTCCATTCAGTTCTTTCAGGACCCAAATGGGGCGACCCATGTCGAAGGTAAAATCACCGGTCTCTCACCTGGACTCCATGGCTTCCATATCCACTCTCTCGGTGATACCACAAATGGCTGCAACTCTACTGGGCCTCATTTTAATCCGCTGAAGAAGGGGCATGGAGCTCCTGGGGATGTAGAACGTCATGCTGGAGATTTGGGTAACATCTATGCTGGTCCAGATGGGGTTGCTGAAGTTTCCATTACAGATAGGCTGATTTCTCTGAAGGGACCTCATTCAATACTAGGCCGAGCGGTAGTCGTGCACGCTGATCCGGATGATCTTGGCAAAGGAGGGCATGAACTTAGCAAGACTACTGGAAATGCTGGTGCAAGAGTCGGATGCGGT

Coding sequence (CDS)

ATGGGTTCTCTCAAAGCCGTGGCGCTCATCGCCGGAGGAGATTCCAACATCAGAGGCTCCATTCAGTTCTTTCAGGACCCAAATGGGGCGACCCATGTCGAAGGTAAAATCACCGGTCTCTCACCTGGACTCCATGGCTTCCATATCCACTCTCTCGGTGATACCACAAATGGCTGCAACTCTACTGGGCCTCATTTTAATCCGCTGAAGAAGGGGCATGGAGCTCCTGGGGATGTAGAACGTCATGCTGGAGATTTGGGTAACATCTATGCTGGTCCAGATGGGGTTGCTGAAGTTTCCATTACAGATAGGCTGATTTCTCTGAAGGGACCTCATTCAATACTAGGCCGAGCGGTAGTCGTGCACGCTGATCCGGATGATCTTGGCAAAGGAGGGCATGAACTTAGCAAGACTACTGGAAATGCTGGTGCAAGAGTCGGATGCGGT

Protein sequence

MGSLKAVALIAGGDSNIRGSIQFFQDPNGATHVEGKITGLSPGLHGFHIHSLGDTTNGCNSTGPHFNPLKKGHGAPGDVERHAGDLGNIYAGPDGVAEVSITDRLISLKGPHSILGRAVVVHADPDDLGKGGHELSKTTGNAGARVGCG

Homology

[Close]

BLAST of MS017073 vs. NCBI nr
Match: XP_022156203.1 (superoxide dismutase [Cu-Zn] 2 [Momordica charantia])

HSP 1 Score: 310.1 bits (793), Expect = 1.1e-80
Identity = 149/149 (100.00%), Postives = 149/149 (100.00%), Query Frame = 0


Query: 1   MGSLKAVALIAGGDSNIRGSIQFFQDPNGATHVEGKITGLSPGLHGFHIHSLGDTTNGCN 60
           MGSLKAVALIAGGDSNIRGSIQFFQDPNGATHVEGKITGLSPGLHGFHIHSLGDTTNGCN
Sbjct: 1   MGSLKAVALIAGGDSNIRGSIQFFQDPNGATHVEGKITGLSPGLHGFHIHSLGDTTNGCN 60

Query: 61  STGPHFNPLKKGHGAPGDVERHAGDLGNIYAGPDGVAEVSITDRLISLKGPHSILGRAVV 120
           STGPHFNPLKKGHGAPGDVERHAGDLGNIYAGPDGVAEVSITDRLISLKGPHSILGRAVV
Sbjct: 61  STGPHFNPLKKGHGAPGDVERHAGDLGNIYAGPDGVAEVSITDRLISLKGPHSILGRAVV 120

Query: 121 VHADPDDLGKGGHELSKTTGNAGARVGCG 150
           VHADPDDLGKGGHELSKTTGNAGARVGCG
Sbjct: 121 VHADPDDLGKGGHELSKTTGNAGARVGCG 149

[Close]

BLAST of MS017073 vs. NCBI nr
Match: APO14278.1 (superoxide dismutase 2 [Luffa aegyptiaca])

HSP 1 Score: 290.4 bits (742), Expect = 8.7e-75
Identity = 137/149 (91.95%), Postives = 144/149 (96.64%), Query Frame = 0


Query: 1   MGSLKAVALIAGGDSNIRGSIQFFQDPNGATHVEGKITGLSPGLHGFHIHSLGDTTNGCN 60
           MG+LKAV LI GGDSNI+GSIQF QD NGATHV+G+I+GLSPGLHGFHIH+LGDTTNGCN
Sbjct: 1   MGALKAVVLITGGDSNIKGSIQFVQDSNGATHVKGRISGLSPGLHGFHIHALGDTTNGCN 60

Query: 61  STGPHFNPLKKGHGAPGDVERHAGDLGNIYAGPDGVAEVSITDRLISLKGPHSILGRAVV 120
           STGPHFNPLKK HGAPGDVERHAGDLGNIYAGPDGVAE+SITDRLISLKGPHSILGRAVV
Sbjct: 61  STGPHFNPLKKDHGAPGDVERHAGDLGNIYAGPDGVAEISITDRLISLKGPHSILGRAVV 120

Query: 121 VHADPDDLGKGGHELSKTTGNAGARVGCG 150
           VHADPDDLGKGGHELSKTTGNAGARVGCG
Sbjct: 121 VHADPDDLGKGGHELSKTTGNAGARVGCG 149

[Close]

BLAST of MS017073 vs. NCBI nr
Match: XP_023518071.1 (superoxide dismutase [Cu-Zn] 2-like [Cucurbita pepo subsp. pepo] >XP_023521911.1 superoxide dismutase [Cu-Zn] 2-like [Cucurbita pepo subsp. pepo] >KAG7027485.1 Superoxide dismutase [Cu-Zn] 2 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 283.9 bits (725), Expect = 8.1e-73
Identity = 135/150 (90.00%), Postives = 143/150 (95.33%), Query Frame = 0


Query: 1   MGSLKAVALIAGGD-SNIRGSIQFFQDPNGATHVEGKITGLSPGLHGFHIHSLGDTTNGC 60
           MG+LKAVALI GGD SN++GSIQF QD NGATHV G+++GLSPGLHGFHIH+LGDTTNGC
Sbjct: 1   MGALKAVALITGGDHSNVKGSIQFVQDSNGATHVNGRLSGLSPGLHGFHIHALGDTTNGC 60

Query: 61  NSTGPHFNPLKKGHGAPGDVERHAGDLGNIYAGPDGVAEVSITDRLISLKGPHSILGRAV 120
           NSTGPHFNPLKK HGAPGD ERHAGDLGNIYAGPDGVAEVSITDRLISLKGPHSILGRAV
Sbjct: 61  NSTGPHFNPLKKNHGAPGDSERHAGDLGNIYAGPDGVAEVSITDRLISLKGPHSILGRAV 120

Query: 121 VVHADPDDLGKGGHELSKTTGNAGARVGCG 150
           VVHADPDDLGKGGHELSKTTGNAGAR+GCG
Sbjct: 121 VVHADPDDLGKGGHELSKTTGNAGARIGCG 150

[Close]

BLAST of MS017073 vs. NCBI nr
Match: KAG6595499.1 (Superoxide dismutase [Cu-Zn] 2, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 283.5 bits (724), Expect = 1.1e-72
Identity = 134/150 (89.33%), Postives = 143/150 (95.33%), Query Frame = 0


Query: 1   MGSLKAVALIAGGD-SNIRGSIQFFQDPNGATHVEGKITGLSPGLHGFHIHSLGDTTNGC 60
           MG+LKAVALI GGD SN++GSIQF QD NGATHV G+++GLSPGLHGFHIH+LGDTTNGC
Sbjct: 1   MGALKAVALITGGDHSNVKGSIQFVQDSNGATHVNGRLSGLSPGLHGFHIHALGDTTNGC 60

Query: 61  NSTGPHFNPLKKGHGAPGDVERHAGDLGNIYAGPDGVAEVSITDRLISLKGPHSILGRAV 120
           NSTGPHFNPLKK HGAPGD ERHAGDLGNIYAGPDG+AEVSITDRLISLKGPHSILGRAV
Sbjct: 61  NSTGPHFNPLKKNHGAPGDSERHAGDLGNIYAGPDGIAEVSITDRLISLKGPHSILGRAV 120

Query: 121 VVHADPDDLGKGGHELSKTTGNAGARVGCG 150
           VVHADPDDLGKGGHELSKTTGNAGAR+GCG
Sbjct: 121 VVHADPDDLGKGGHELSKTTGNAGARIGCG 150

[Close]

BLAST of MS017073 vs. NCBI nr
Match: XP_004147539.1 (superoxide dismutase [Cu-Zn] 2 [Cucumis sativus] >KGN53932.1 hypothetical protein Csa_021580 [Cucumis sativus])

HSP 1 Score: 283.5 bits (724), Expect = 1.1e-72
Identity = 131/149 (87.92%), Postives = 142/149 (95.30%), Query Frame = 0


Query: 1   MGSLKAVALIAGGDSNIRGSIQFFQDPNGATHVEGKITGLSPGLHGFHIHSLGDTTNGCN 60
           MG+LKAV LIAGGDSN+RG+IQF QD NGATHV G+I+GLSPGLHGFHIH+LGDTTNGCN
Sbjct: 1   MGALKAVVLIAGGDSNVRGTIQFVQDSNGATHVNGRISGLSPGLHGFHIHALGDTTNGCN 60

Query: 61  STGPHFNPLKKGHGAPGDVERHAGDLGNIYAGPDGVAEVSITDRLISLKGPHSILGRAVV 120
           STGPHFNPLKK HG+PGD ERH GDLGNIYAGPDGVAEVSI+DRLISLKGPHS++GRAVV
Sbjct: 61  STGPHFNPLKKDHGSPGDSERHVGDLGNIYAGPDGVAEVSISDRLISLKGPHSVIGRAVV 120

Query: 121 VHADPDDLGKGGHELSKTTGNAGARVGCG 150
           VHADPDDLGKGGHELSKTTGNAGAR+GCG
Sbjct: 121 VHADPDDLGKGGHELSKTTGNAGARIGCG 149

[Close]

BLAST of MS017073 vs. ExPASy Swiss-Prot
Match: O49044 (Superoxide dismutase [Cu-Zn] 2 OS=Mesembryanthemum crystallinum OX=3544 GN=SODCC.2 PE=2 SV=1)

HSP 1 Score: 238.8 bits (608), Expect = 3.9e-62
Identity = 114/149 (76.51%), Postives = 128/149 (85.91%), Query Frame = 0


Query: 1   MGSLKAVALIAGGDSNIRGSIQFFQDPNGATHVEGKITGLSPGLHGFHIHSLGDTTNGCN 60
           MG +KAVA+I  G++N++GS+QF QD  G THV+G+ITGL+PGLHGFHIH+LGDTTNGCN
Sbjct: 1   MGVIKAVAVI-NGNNNVKGSLQFIQDSTGVTHVKGRITGLTPGLHGFHIHALGDTTNGCN 60

Query: 61  STGPHFNPLKKGHGAPGDVERHAGDLGNIYAGPDGVAEVSITDRLISLKGPHSILGRAVV 120
           STGPHFNPLKK HGAP D ERHAGDLGN+ AG DGVAEVS+ D  I L G HSILGRAVV
Sbjct: 61  STGPHFNPLKKDHGAPFDTERHAGDLGNVVAGADGVAEVSVRDTQIPLSGQHSILGRAVV 120

Query: 121 VHADPDDLGKGGHELSKTTGNAGARVGCG 150
           VHAD DDLG+ GHELSKTTGNAGARV CG
Sbjct: 121 VHADQDDLGRTGHELSKTTGNAGARVRCG 148

[Close]

BLAST of MS017073 vs. ExPASy Swiss-Prot
Match: Q9FK60 (Superoxide dismutase [Cu-Zn] 3 OS=Arabidopsis thaliana OX=3702 GN=CSD3 PE=1 SV=1)

HSP 1 Score: 229.2 bits (583), Expect = 3.1e-59
Identity = 110/148 (74.32%), Postives = 126/148 (85.14%), Query Frame = 0


Query: 2   GSLKAVALIAGGDSNIRGSIQFFQDPNGATHVEGKITGLSPGLHGFHIHSLGDTTNGCNS 61
           G+L+AVALIA GD+N+RG +QF QD +G THV GKI+GLSPG HGFHIHS GDTTNGC S
Sbjct: 6   GNLRAVALIA-GDNNVRGCLQFVQDISGTTHVTGKISGLSPGFHGFHIHSFGDTTNGCIS 65

Query: 62  TGPHFNPLKKGHGAPGDVERHAGDLGNIYAGPDGVAEVSITDRLISLKGPHSILGRAVVV 121
           TGPHFNPL + HG P + ERHAGDLGNI AG +GVAE+ I D+ I L G +SILGRAVVV
Sbjct: 66  TGPHFNPLNRVHGPPNEEERHAGDLGNILAGSNGVAEILIKDKHIPLSGQYSILGRAVVV 125

Query: 122 HADPDDLGKGGHELSKTTGNAGARVGCG 150
           HADPDDLGKGGH+LSK+TGNAG+RVGCG
Sbjct: 126 HADPDDLGKGGHKLSKSTGNAGSRVGCG 152

[Close]

BLAST of MS017073 vs. ExPASy Swiss-Prot
Match: P24669 (Superoxide dismutase [Cu-Zn] OS=Pinus sylvestris OX=3349 GN=SODCC PE=2 SV=1)

HSP 1 Score: 218.0 bits (554), Expect = 7.2e-56
Identity = 104/149 (69.80%), Postives = 120/149 (80.54%), Query Frame = 0


Query: 1   MGSLKAVALIAGGDSNIRGSIQFFQDPNGATHVEGKITGLSPGLHGFHIHSLGDTTNGCN 60
           MG LKAV ++  G ++++G +QF Q+ +G T V GKI+GLSPGLHGFH+H+LGDTTNGC 
Sbjct: 1   MGLLKAV-VVLNGAADVKGVVQFTQEGDGPTTVTGKISGLSPGLHGFHVHALGDTTNGCM 60

Query: 61  STGPHFNPLKKGHGAPGDVERHAGDLGNIYAGPDGVAEVSITDRLISLKGPHSILGRAVV 120
           STGPHFNPL K HGAP D  RHAGDLGN+  G DG  E SITD  I L GPHSI+GRAVV
Sbjct: 61  STGPHFNPLGKEHGAPTDDNRHAGDLGNVTVGTDGTVEFSITDSQIPLSGPHSIVGRAVV 120

Query: 121 VHADPDDLGKGGHELSKTTGNAGARVGCG 150
           VHADPDDLGKGGHELSK+TGNAG R+ CG
Sbjct: 121 VHADPDDLGKGGHELSKSTGNAGGRLACG 148

[Close]

BLAST of MS017073 vs. ExPASy Swiss-Prot
Match: P11428 (Superoxide dismutase [Cu-Zn] 2 OS=Zea mays OX=4577 GN=SODCC.1 PE=2 SV=2)

HSP 1 Score: 215.7 bits (548), Expect = 3.6e-55
Identity = 103/146 (70.55%), Postives = 120/146 (82.19%), Query Frame = 0


Query: 4   LKAVALIAGGDSNIRGSIQFFQDPNGATHVEGKITGLSPGLHGFHIHSLGDTTNGCNSTG 63
           +KAVA++AG D  ++G+I F Q+ +G T V G I+GL PGLHGFH+H+LGDTTNGC STG
Sbjct: 2   VKAVAVLAGTD--VKGTIFFSQEGDGPTTVTGSISGLKPGLHGFHVHALGDTTNGCMSTG 61

Query: 64  PHFNPLKKGHGAPGDVERHAGDLGNIYAGPDGVAEVSITDRLISLKGPHSILGRAVVVHA 123
           PHFNP+ K HGAP D +RHAGDLGN+ AG DGV  V+ITD  I L GPHSI+GRAVVVHA
Sbjct: 62  PHFNPVGKEHGAPEDEDRHAGDLGNVTAGEDGVVNVNITDSQIPLAGPHSIIGRAVVVHA 121

Query: 124 DPDDLGKGGHELSKTTGNAGARVGCG 150
           DPDDLGKGGHELSK+TGNAG RV CG
Sbjct: 122 DPDDLGKGGHELSKSTGNAGGRVACG 145

[Close]

BLAST of MS017073 vs. ExPASy Swiss-Prot
Match: C0HK70 (Superoxide dismutase [Cu-Zn] OS=Zingiber officinale OX=94328 PE=1 SV=1)

HSP 1 Score: 210.3 bits (534), Expect = 1.5e-53
Identity = 100/146 (68.49%), Postives = 114/146 (78.08%), Query Frame = 0


Query: 4   LKAVALIAGGDSNIRGSIQFFQDPNGATHVEGKITGLSPGLHGFHIHSLGDTTNGCNSTG 63
           +KAVA++ G    ++G+I F Q+ +G T V G ITGL PGLHGFH+H+LGDTTNGC STG
Sbjct: 2   VKAVAVL-GSSEGVKGTIYFVQEGDGPTTVTGSITGLKPGLHGFHVHALGDTTNGCMSTG 61

Query: 64  PHFNPLKKGHGAPGDVERHAGDLGNIYAGPDGVAEVSITDRLISLKGPHSILGRAVVVHA 123
           PHFNP  K HGAP D  RHAGDLGN  AG DG+  VS+ D  I L GP+SI+GRAVVVHA
Sbjct: 62  PHFNPAGKEHGAPEDENRHAGDLGNATAGEDGIVTVSVVDSQIPLSGPNSIIGRAVVVHA 121

Query: 124 DPDDLGKGGHELSKTTGNAGARVGCG 150
           DPDDLGKGGHELSKTTGNAG RV CG
Sbjct: 122 DPDDLGKGGHELSKTTGNAGGRVACG 146

[Close]

BLAST of MS017073 vs. ExPASy TrEMBL
Match: A0A6J1DPZ5 (Superoxide dismutase [Cu-Zn] OS=Momordica charantia OX=3673 GN=LOC111023148 PE=3 SV=1)

HSP 1 Score: 310.1 bits (793), Expect = 5.1e-81
Identity = 149/149 (100.00%), Postives = 149/149 (100.00%), Query Frame = 0


Query: 1   MGSLKAVALIAGGDSNIRGSIQFFQDPNGATHVEGKITGLSPGLHGFHIHSLGDTTNGCN 60
           MGSLKAVALIAGGDSNIRGSIQFFQDPNGATHVEGKITGLSPGLHGFHIHSLGDTTNGCN
Sbjct: 1   MGSLKAVALIAGGDSNIRGSIQFFQDPNGATHVEGKITGLSPGLHGFHIHSLGDTTNGCN 60

Query: 61  STGPHFNPLKKGHGAPGDVERHAGDLGNIYAGPDGVAEVSITDRLISLKGPHSILGRAVV 120
           STGPHFNPLKKGHGAPGDVERHAGDLGNIYAGPDGVAEVSITDRLISLKGPHSILGRAVV
Sbjct: 61  STGPHFNPLKKGHGAPGDVERHAGDLGNIYAGPDGVAEVSITDRLISLKGPHSILGRAVV 120

Query: 121 VHADPDDLGKGGHELSKTTGNAGARVGCG 150
           VHADPDDLGKGGHELSKTTGNAGARVGCG
Sbjct: 121 VHADPDDLGKGGHELSKTTGNAGARVGCG 149

[Close]

BLAST of MS017073 vs. ExPASy TrEMBL
Match: A0A1L5JHV2 (Superoxide dismutase [Cu-Zn] OS=Luffa aegyptiaca OX=3670 PE=2 SV=1)

HSP 1 Score: 290.4 bits (742), Expect = 4.2e-75
Identity = 137/149 (91.95%), Postives = 144/149 (96.64%), Query Frame = 0


Query: 1   MGSLKAVALIAGGDSNIRGSIQFFQDPNGATHVEGKITGLSPGLHGFHIHSLGDTTNGCN 60
           MG+LKAV LI GGDSNI+GSIQF QD NGATHV+G+I+GLSPGLHGFHIH+LGDTTNGCN
Sbjct: 1   MGALKAVVLITGGDSNIKGSIQFVQDSNGATHVKGRISGLSPGLHGFHIHALGDTTNGCN 60

Query: 61  STGPHFNPLKKGHGAPGDVERHAGDLGNIYAGPDGVAEVSITDRLISLKGPHSILGRAVV 120
           STGPHFNPLKK HGAPGDVERHAGDLGNIYAGPDGVAE+SITDRLISLKGPHSILGRAVV
Sbjct: 61  STGPHFNPLKKDHGAPGDVERHAGDLGNIYAGPDGVAEISITDRLISLKGPHSILGRAVV 120

Query: 121 VHADPDDLGKGGHELSKTTGNAGARVGCG 150
           VHADPDDLGKGGHELSKTTGNAGARVGCG
Sbjct: 121 VHADPDDLGKGGHELSKTTGNAGARVGCG 149

[Close]

BLAST of MS017073 vs. ExPASy TrEMBL
Match: A0A0A0KZZ1 (Superoxide dismutase [Cu-Zn] OS=Cucumis sativus OX=3659 GN=Csa_4G192040 PE=3 SV=1)

HSP 1 Score: 283.5 bits (724), Expect = 5.1e-73
Identity = 131/149 (87.92%), Postives = 142/149 (95.30%), Query Frame = 0


Query: 1   MGSLKAVALIAGGDSNIRGSIQFFQDPNGATHVEGKITGLSPGLHGFHIHSLGDTTNGCN 60
           MG+LKAV LIAGGDSN+RG+IQF QD NGATHV G+I+GLSPGLHGFHIH+LGDTTNGCN
Sbjct: 1   MGALKAVVLIAGGDSNVRGTIQFVQDSNGATHVNGRISGLSPGLHGFHIHALGDTTNGCN 60

Query: 61  STGPHFNPLKKGHGAPGDVERHAGDLGNIYAGPDGVAEVSITDRLISLKGPHSILGRAVV 120
           STGPHFNPLKK HG+PGD ERH GDLGNIYAGPDGVAEVSI+DRLISLKGPHS++GRAVV
Sbjct: 61  STGPHFNPLKKDHGSPGDSERHVGDLGNIYAGPDGVAEVSISDRLISLKGPHSVIGRAVV 120

Query: 121 VHADPDDLGKGGHELSKTTGNAGARVGCG 150
           VHADPDDLGKGGHELSKTTGNAGAR+GCG
Sbjct: 121 VHADPDDLGKGGHELSKTTGNAGARIGCG 149

[Close]

BLAST of MS017073 vs. ExPASy TrEMBL
Match: A0A6J1HRQ3 (Superoxide dismutase [Cu-Zn] OS=Cucurbita maxima OX=3661 GN=LOC111466116 PE=3 SV=1)

HSP 1 Score: 282.3 bits (721), Expect = 1.1e-72
Identity = 134/150 (89.33%), Postives = 142/150 (94.67%), Query Frame = 0


Query: 1   MGSLKAVALIAGGD-SNIRGSIQFFQDPNGATHVEGKITGLSPGLHGFHIHSLGDTTNGC 60
           MG+LKAVALI GGD SN++GSIQF QD NGATHV G+++GLSPGLHGFHIH+LGDTTNGC
Sbjct: 1   MGALKAVALITGGDHSNVKGSIQFVQDSNGATHVNGRLSGLSPGLHGFHIHALGDTTNGC 60

Query: 61  NSTGPHFNPLKKGHGAPGDVERHAGDLGNIYAGPDGVAEVSITDRLISLKGPHSILGRAV 120
           NSTGPHFNPLKK HGAPGD ERHAGDLGNIY GPDGVAEVSITDRLISLKGPHSILGRAV
Sbjct: 61  NSTGPHFNPLKKNHGAPGDSERHAGDLGNIYVGPDGVAEVSITDRLISLKGPHSILGRAV 120

Query: 121 VVHADPDDLGKGGHELSKTTGNAGARVGCG 150
           VVHADPDDLGKGGHELSKTTGNAGAR+GCG
Sbjct: 121 VVHADPDDLGKGGHELSKTTGNAGARIGCG 150

[Close]

BLAST of MS017073 vs. ExPASy TrEMBL
Match: A0A6J1HPF2 (Superoxide dismutase OS=Cucurbita maxima OX=3661 GN=LOC111466116 PE=3 SV=1)

HSP 1 Score: 280.8 bits (717), Expect = 3.3e-72
Identity = 133/149 (89.26%), Postives = 141/149 (94.63%), Query Frame = 0


Query: 1   MGSLKAVALIAGGD-SNIRGSIQFFQDPNGATHVEGKITGLSPGLHGFHIHSLGDTTNGC 60
           MG+LKAVALI GGD SN++GSIQF QD NGATHV G+++GLSPGLHGFHIH+LGDTTNGC
Sbjct: 1   MGALKAVALITGGDHSNVKGSIQFVQDSNGATHVNGRLSGLSPGLHGFHIHALGDTTNGC 60

Query: 61  NSTGPHFNPLKKGHGAPGDVERHAGDLGNIYAGPDGVAEVSITDRLISLKGPHSILGRAV 120
           NSTGPHFNPLKK HGAPGD ERHAGDLGNIY GPDGVAEVSITDRLISLKGPHSILGRAV
Sbjct: 61  NSTGPHFNPLKKNHGAPGDSERHAGDLGNIYVGPDGVAEVSITDRLISLKGPHSILGRAV 120

Query: 121 VVHADPDDLGKGGHELSKTTGNAGARVGC 149
           VVHADPDDLGKGGHELSKTTGNAGAR+GC
Sbjct: 121 VVHADPDDLGKGGHELSKTTGNAGARIGC 149

[Close]

BLAST of MS017073 vs. TAIR 10
Match: AT5G18100.1 (copper/zinc superoxide dismutase 3 )

HSP 1 Score: 229.2 bits (583), Expect = 2.2e-60
Identity = 110/148 (74.32%), Postives = 126/148 (85.14%), Query Frame = 0


Query: 2   GSLKAVALIAGGDSNIRGSIQFFQDPNGATHVEGKITGLSPGLHGFHIHSLGDTTNGCNS 61
           G+L+AVALIA GD+N+RG +QF QD +G THV GKI+GLSPG HGFHIHS GDTTNGC S
Sbjct: 6   GNLRAVALIA-GDNNVRGCLQFVQDISGTTHVTGKISGLSPGFHGFHIHSFGDTTNGCIS 65

Query: 62  TGPHFNPLKKGHGAPGDVERHAGDLGNIYAGPDGVAEVSITDRLISLKGPHSILGRAVVV 121
           TGPHFNPL + HG P + ERHAGDLGNI AG +GVAE+ I D+ I L G +SILGRAVVV
Sbjct: 66  TGPHFNPLNRVHGPPNEEERHAGDLGNILAGSNGVAEILIKDKHIPLSGQYSILGRAVVV 125

Query: 122 HADPDDLGKGGHELSKTTGNAGARVGCG 150
           HADPDDLGKGGH+LSK+TGNAG+RVGCG
Sbjct: 126 HADPDDLGKGGHKLSKSTGNAGSRVGCG 152

[Close]

BLAST of MS017073 vs. TAIR 10
Match: AT5G18100.2 (copper/zinc superoxide dismutase 3 )

HSP 1 Score: 197.2 bits (500), Expect = 9.3e-51
Identity = 95/130 (73.08%), Postives = 108/130 (83.08%), Query Frame = 0


Query: 2   GSLKAVALIAGGDSNIRGSIQFFQDPNGATHVEGKITGLSPGLHGFHIHSLGDTTNGCNS 61
           G+L+AVALIA GD+N+RG +QF QD +G THV GKI+GLSPG HGFHIHS GDTTNGC S
Sbjct: 6   GNLRAVALIA-GDNNVRGCLQFVQDISGTTHVTGKISGLSPGFHGFHIHSFGDTTNGCIS 65

Query: 62  TGPHFNPLKKGHGAPGDVERHAGDLGNIYAGPDGVAEVSITDRLISLKGPHSILGRAVVV 121
           TGPHFNPL + HG P + ERHAGDLGNI AG +GVAE+ I D+ I L G +SILGRAVVV
Sbjct: 66  TGPHFNPLNRVHGPPNEEERHAGDLGNILAGSNGVAEILIKDKHIPLSGQYSILGRAVVV 125

Query: 122 HADPDDLGKG 132
           HADPDDLGKG
Sbjct: 126 HADPDDLGKG 134

[Close]

BLAST of MS017073 vs. TAIR 10
Match: AT1G08830.1 (copper/zinc superoxide dismutase 1 )

HSP 1 Score: 195.7 bits (496), Expect = 2.7e-50
Identity = 95/145 (65.52%), Postives = 108/145 (74.48%), Query Frame = 0


Query: 5   KAVALIAGGDSNIRGSIQFFQDPNGATHVEGKITGLSPGLHGFHIHSLGDTTNGCNSTGP 64
           K VA++      + G+I F Q+ +G T V G ++GL PGLHGFH+H+LGDTTNGC STGP
Sbjct: 3   KGVAVL-NSSEGVTGTIFFTQEGDGVTTVSGTVSGLKPGLHGFHVHALGDTTNGCMSTGP 62

Query: 65  HFNPLKKGHGAPGDVERHAGDLGNIYAGPDGVAEVSITDRLISLKGPHSILGRAVVVHAD 124
           HFNP  K HGAP D  RHAGDLGNI  G DG A  +ITD  I L GP+SI+GRAVVVHAD
Sbjct: 63  HFNPDGKTHGAPEDANRHAGDLGNITVGDDGTATFTITDCQIPLTGPNSIVGRAVVVHAD 122

Query: 125 PDDLGKGGHELSKTTGNAGARVGCG 150
           PDDLGKGGHELS  TGNAG RV CG
Sbjct: 123 PDDLGKGGHELSLATGNAGGRVACG 146

[Close]

BLAST of MS017073 vs. TAIR 10
Match: AT1G08830.2 (copper/zinc superoxide dismutase 1 )

HSP 1 Score: 195.7 bits (496), Expect = 2.7e-50
Identity = 95/145 (65.52%), Postives = 108/145 (74.48%), Query Frame = 0


Query: 5   KAVALIAGGDSNIRGSIQFFQDPNGATHVEGKITGLSPGLHGFHIHSLGDTTNGCNSTGP 64
           K VA++      + G+I F Q+ +G T V G ++GL PGLHGFH+H+LGDTTNGC STGP
Sbjct: 3   KGVAVL-NSSEGVTGTIFFTQEGDGVTTVSGTVSGLKPGLHGFHVHALGDTTNGCMSTGP 62

Query: 65  HFNPLKKGHGAPGDVERHAGDLGNIYAGPDGVAEVSITDRLISLKGPHSILGRAVVVHAD 124
           HFNP  K HGAP D  RHAGDLGNI  G DG A  +ITD  I L GP+SI+GRAVVVHAD
Sbjct: 63  HFNPDGKTHGAPEDANRHAGDLGNITVGDDGTATFTITDCQIPLTGPNSIVGRAVVVHAD 122

Query: 125 PDDLGKGGHELSKTTGNAGARVGCG 150
           PDDLGKGGHELS  TGNAG RV CG
Sbjct: 123 PDDLGKGGHELSLATGNAGGRVACG 146

[Close]

BLAST of MS017073 vs. TAIR 10
Match: AT2G28190.1 (copper/zinc superoxide dismutase 2 )

HSP 1 Score: 183.0 bits (463), Expect = 1.8e-46
Identity = 91/145 (62.76%), Postives = 105/145 (72.41%), Query Frame = 0


Query: 5   KAVALIAGGDSNIRGSIQFFQDPNGATHVEGKITGLSPGLHGFHIHSLGDTTNGCNSTGP 64
           KAVA++  G S++ G +   QD +G T V  +ITGL+PG HGFH+H  GDTTNGC STGP
Sbjct: 66  KAVAVLK-GTSDVEGVVTLTQDDSGPTTVNVRITGLTPGPHGFHLHEFGDTTNGCISTGP 125

Query: 65  HFNPLKKGHGAPGDVERHAGDLGNIYAGPDGVAEVSITDRLISLKGPHSILGRAVVVHAD 124
           HFNP    HGAP D  RHAGDLGNI A  DGVAE +I D  I L GP+S++GRA VVH  
Sbjct: 126 HFNPNNMTHGAPEDECRHAGDLGNINANADGVAETTIVDNQIPLTGPNSVVGRAFVVHEL 185

Query: 125 PDDLGKGGHELSKTTGNAGARVGCG 150
            DDLGKGGHELS TTGNAG R+ CG
Sbjct: 186 KDDLGKGGHELSLTTGNAGGRLACG 209

The following BLAST results are available for this feature:

BLAST of MS017073 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022156203.1	1.1e-80	100.00	superoxide dismutase [Cu-Zn] 2 [Momordica charantia]	[more]
APO14278.1	8.7e-75	91.95	superoxide dismutase 2 [Luffa aegyptiaca]	[more]
XP_023518071.1	8.1e-73	90.00	superoxide dismutase [Cu-Zn] 2-like [Cucurbita pepo subsp. pepo] >XP_023521911.1...	[more]
KAG6595499.1	1.1e-72	89.33	Superoxide dismutase [Cu-Zn] 2, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_004147539.1	1.1e-72	87.92	superoxide dismutase [Cu-Zn] 2 [Cucumis sativus] >KGN53932.1 hypothetical protei...	[more]

BLAST of MS017073 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O49044	3.9e-62	76.51	Superoxide dismutase [Cu-Zn] 2 OS=Mesembryanthemum crystallinum OX=3544 GN=SODCC...	[more]
Q9FK60	3.1e-59	74.32	Superoxide dismutase [Cu-Zn] 3 OS=Arabidopsis thaliana OX=3702 GN=CSD3 PE=1 SV=1	[more]
P24669	7.2e-56	69.80	Superoxide dismutase [Cu-Zn] OS=Pinus sylvestris OX=3349 GN=SODCC PE=2 SV=1	[more]
P11428	3.6e-55	70.55	Superoxide dismutase [Cu-Zn] 2 OS=Zea mays OX=4577 GN=SODCC.1 PE=2 SV=2	[more]
C0HK70	1.5e-53	68.49	Superoxide dismutase [Cu-Zn] OS=Zingiber officinale OX=94328 PE=1 SV=1	[more]

BLAST of MS017073 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DPZ5	5.1e-81	100.00	Superoxide dismutase [Cu-Zn] OS=Momordica charantia OX=3673 GN=LOC111023148 PE=3...	[more]
A0A1L5JHV2	4.2e-75	91.95	Superoxide dismutase [Cu-Zn] OS=Luffa aegyptiaca OX=3670 PE=2 SV=1	[more]
A0A0A0KZZ1	5.1e-73	87.92	Superoxide dismutase [Cu-Zn] OS=Cucumis sativus OX=3659 GN=Csa_4G192040 PE=3 SV=...	[more]
A0A6J1HRQ3	1.1e-72	89.33	Superoxide dismutase [Cu-Zn] OS=Cucurbita maxima OX=3661 GN=LOC111466116 PE=3 SV...	[more]
A0A6J1HPF2	3.3e-72	89.26	Superoxide dismutase OS=Cucurbita maxima OX=3661 GN=LOC111466116 PE=3 SV=1	[more]

BLAST of MS017073 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G18100.1	2.2e-60	74.32	copper/zinc superoxide dismutase 3	[more]
AT5G18100.2	9.3e-51	73.08	copper/zinc superoxide dismutase 3	[more]
AT1G08830.1	2.7e-50	65.52	copper/zinc superoxide dismutase 1	[more]
AT1G08830.2	2.7e-50	65.52	copper/zinc superoxide dismutase 1	[more]
AT2G28190.1	1.8e-46	62.76	copper/zinc superoxide dismutase 2	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001424	Superoxide dismutase, copper/zinc binding domain	PRINTS	PR00068	CUZNDISMTASE	coord: 101..123 score: 60.78 coord: 82..91 score: 74.54 coord: 46..68 score: 75.35 coord: 126..149 score: 65.1
IPR001424	Superoxide dismutase, copper/zinc binding domain	PFAM	PF00080	Sod_Cu	coord: 14..149 e-value: 5.5E-46 score: 156.2
IPR001424	Superoxide dismutase, copper/zinc binding domain	CDD	cd00305	Cu-Zn_Superoxide_Dismutase	coord: 5..148 e-value: 1.86067E-59 score: 178.993
IPR036423	Superoxide dismutase-like, copper/zinc binding domain superfamily	GENE3D	2.60.40.200	Superoxide dismutase, copper/zinc binding domain	coord: 3..149 e-value: 2.5E-61 score: 208.2
IPR036423	Superoxide dismutase-like, copper/zinc binding domain superfamily	SUPERFAMILY	49329	Cu,Zn superoxide dismutase-like	coord: 6..149
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 130..149
None	No IPR available	PANTHER	PTHR10003:SF31	SUPEROXIDE DISMUTASE [CU-ZN] 3	coord: 2..149
IPR024134	Superoxide dismutase (Cu/Zn) / superoxide dismutase copper chaperone	PANTHER	PTHR10003	SUPEROXIDE DISMUTASE CU-ZN -RELATED	coord: 2..149

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS017073.1	MS017073.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006801	superoxide metabolic process
molecular_function	GO:0046872	metal ion binding