MS016899 (gene) Bitter gourd (TR) v1

Overview
NameMS016899
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Descriptionzinc finger homeobox protein 4-like isoform X1
Locationscaffold9_1: 900440 .. 901045 (+)
RNA-Seq ExpressionMS016899
SyntenyMS016899
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
GAAATTGAGGCTGTGAAGCGCCATTACAATCATCTCAAAACCATCAATTCGGAGTTGAAAGCGAAAAAGCAAAAGGTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTATCTCCTTGGAACTCTGCAGTCCCCAATTTCATTATCTTTAGGTTTTTGTTTTTCTTTTTGCATCATAAATCAATCTAATTACATTTTCTGTTCTTCTTCAGATGATGCCGAGTTTCTACAACGGTTCTCCGCAACCAGAAACAGGAAGTTCAAGTTCCGCCATGGAAATCGCTCAACTCACTGTCAAATCCTCCTCTCCAACTCTCGAGAATCATCATCATCAACATCAACAACAACAAAAACAGAATCATAATCATCATCGTCATTATCCGCAACCGTCCATCAAGAATCAGACGCCAGAACCGAGCCAGAGTTTCCAAATCCCTCCGTACGATACCTCATTGGGCCCAATCGGAATCCCCGACTTGAACATCTCTCTCGAAGAATTCGCTCAGAGGAATTACTCCAAAATCAAGGCCGCTCAAGCGAGACAGAGAAGGATTCGGATCTGCAAGACCAAGAACTCTAACGCAGCTATCAAATTGCAGAGC

mRNA sequence

GAAATTGAGGCTGTGAAGCGCCATTACAATCATCTCAAAACCATCAATTCGGAGTTGAAAGCGAAAAAGCAAAAGATGATGCCGAGTTTCTACAACGGTTCTCCGCAACCAGAAACAGGAAGTTCAAGTTCCGCCATGGAAATCGCTCAACTCACTGTCAAATCCTCCTCTCCAACTCTCGAGAATCATCATCATCAACATCAACAACAACAAAAACAGAATCATAATCATCATCGTCATTATCCGCAACCGTCCATCAAGAATCAGACGCCAGAACCGAGCCAGAGTTTCCAAATCCCTCCGTACGATACCTCATTGGGCCCAATCGGAATCCCCGACTTGAACATCTCTCTCGAAGAATTCGCTCAGAGGAATTACTCCAAAATCAAGGCCGCTCAAGCGAGACAGAGAAGGATTCGGATCTGCAAGACCAAGAACTCTAACGCAGCTATCAAATTGCAGAGC

Coding sequence (CDS)

GAAATTGAGGCTGTGAAGCGCCATTACAATCATCTCAAAACCATCAATTCGGAGTTGAAAGCGAAAAAGCAAAAGATGATGCCGAGTTTCTACAACGGTTCTCCGCAACCAGAAACAGGAAGTTCAAGTTCCGCCATGGAAATCGCTCAACTCACTGTCAAATCCTCCTCTCCAACTCTCGAGAATCATCATCATCAACATCAACAACAACAAAAACAGAATCATAATCATCATCGTCATTATCCGCAACCGTCCATCAAGAATCAGACGCCAGAACCGAGCCAGAGTTTCCAAATCCCTCCGTACGATACCTCATTGGGCCCAATCGGAATCCCCGACTTGAACATCTCTCTCGAAGAATTCGCTCAGAGGAATTACTCCAAAATCAAGGCCGCTCAAGCGAGACAGAGAAGGATTCGGATCTGCAAGACCAAGAACTCTAACGCAGCTATCAAATTGCAGAGC

Protein sequence

EIEAVKRHYNHLKTINSELKAKKQKMMPSFYNGSPQPETGSSSSAMEIAQLTVKSSSPTLENHHHQHQQQQKQNHNHHRHYPQPSIKNQTPEPSQSFQIPPYDTSLGPIGIPDLNISLEEFAQRNYSKIKAAQARQRRIRICKTKNSNAAIKLQS
Homology
BLAST of MS016899 vs. NCBI nr
Match: XP_022144188.1 (uncharacterized protein LOC111013942 [Momordica charantia])

HSP 1 Score: 247.7 bits (631), Expect = 6.7e-62
Identity = 129/130 (99.23%), Postives = 129/130 (99.23%), Query Frame = 0

Query: 26  MMPSFYNGSPQPETGSSSSAMEIAQLTVKSSSPTLENHHHQHQQQQKQNHNHHRHYPQPS 85
           MMPSFYNGSPQPETGSSSSAMEIAQLTVKSSSPTLENHHHQHQQQQKQNHN HRHYPQPS
Sbjct: 1   MMPSFYNGSPQPETGSSSSAMEIAQLTVKSSSPTLENHHHQHQQQQKQNHNRHRHYPQPS 60

Query: 86  IKNQTPEPSQSFQIPPYDTSLGPIGIPDLNISLEEFAQRNYSKIKAAQARQRRIRICKTK 145
           IKNQTPEPSQSFQIPPYDTSLGPIGIPDLNISLEEFAQRNYSKIKAAQARQRRIRICKTK
Sbjct: 61  IKNQTPEPSQSFQIPPYDTSLGPIGIPDLNISLEEFAQRNYSKIKAAQARQRRIRICKTK 120

Query: 146 NSNAAIKLQS 156
           NSNAAIKLQS
Sbjct: 121 NSNAAIKLQS 130

BLAST of MS016899 vs. NCBI nr
Match: XP_011649664.1 (myocardin-related transcription factor A [Cucumis sativus] >KGN62681.1 hypothetical protein Csa_022065 [Cucumis sativus])

HSP 1 Score: 125.6 bits (314), Expect = 3.8e-25
Identity = 87/171 (50.88%), Postives = 111/171 (64.91%), Query Frame = 0

Query: 1   EIEAVKRHYNHLKTINSELKAKKQKMMPSFYNGSPQPETGSSSS-AMEIAQLTVKSSSPT 60
           +IEA+KRH+ +LKTINSELKAKKQ+++  F N S  P+ G+S+S AMEIA+LTVKSS   
Sbjct: 146 DIEAMKRHFINLKTINSELKAKKQEILGGFSNLSVNPKFGTSTSVAMEIAKLTVKSSDSN 205

Query: 61  LENHHHQHQQQQKQNHNHHRHYPQPSIKNQT---PEPSQSFQ--------IPPYDTSLGP 120
           +EN+H +                +PS+KNQT    E S S Q        IP YD SLGP
Sbjct: 206 VENNHDE---------------CEPSMKNQTVPVAEQSNSIQNYQIPIGGIPLYDPSLGP 265

Query: 121 IGIPDLNISLEEFAQRNYSKIKAAQARQRRIRICKTK----NSNAAIKLQS 156
           +GIPDLN+SLE+   +NY+K  AA+ARQ RI+I K K    N+N A KLQS
Sbjct: 266 MGIPDLNLSLEDILHKNYTKYLAAKARQNRIQIWKNKNNNNNNNGAPKLQS 301

BLAST of MS016899 vs. NCBI nr
Match: XP_008444813.1 (PREDICTED: uncharacterized protein LOC103488049 [Cucumis melo] >KAA0065161.1 uncharacterized protein E6C27_scaffold82G004970 [Cucumis melo var. makuwa])

HSP 1 Score: 123.2 bits (308), Expect = 1.9e-24
Identity = 84/169 (49.70%), Postives = 112/169 (66.27%), Query Frame = 0

Query: 1   EIEAVKRHYNHLKTINSELKAKKQKMMPSFYNGSPQPETGSSSS-AMEIAQLTVKSSSPT 60
           +IEA+KRH+ +LKTINSELKAKKQ+++  F N S  PE G+SSS AME+A+LTVKSS   
Sbjct: 146 DIEAMKRHFINLKTINSELKAKKQEILDGFGNVSVNPEIGTSSSVAMEVAKLTVKSSYSN 205

Query: 61  LENHHHQHQQQQKQNHNHHRHYPQPSIKNQT------PEPSQSFQ-----IPPYDTSLGP 120
           +EN+H +                +PS+KNQT         ++++Q     IP YD SLGP
Sbjct: 206 VENNHDE---------------CEPSMKNQTVPTAEQGNSNRNYQIPIGGIPLYDPSLGP 265

Query: 121 IGIPDLNISLEEFAQRNYSKIKAAQARQRRIRICKTK--NSNAAIKLQS 156
           +GIPDLN+SLE+   ++Y+K  AA+ARQ RI+I K K  N+N A KLQS
Sbjct: 266 MGIPDLNLSLEDIFHKSYTKYLAARARQNRIQIWKNKNNNNNGAPKLQS 299

BLAST of MS016899 vs. NCBI nr
Match: XP_022951578.1 (uncharacterized protein LOC111454352 [Cucurbita moschata])

HSP 1 Score: 116.3 bits (290), Expect = 2.3e-22
Identity = 84/165 (50.91%), Postives = 103/165 (62.42%), Query Frame = 0

Query: 1   EIEAVKRHYNHLKTINSELKAKKQKMM---PSFYNGSPQPETGSSSSAMEIAQ-LTVKSS 60
           E EA+K+HYNHLK INSELKAKKQ+M+    S  N S  PE G+SSSAME+ + LTV+SS
Sbjct: 128 EFEAMKQHYNHLKAINSELKAKKQEMILGSNSSKNESAIPEIGTSSSAMEVVKLLTVESS 187

Query: 61  SPTLENHHHQHQQQQKQNHNHHRHYPQPSIKNQTPEPSQSFQIPP-----YD-TSLGPIG 120
           +                      H P P +  Q+   SQ+FQIP      YD +SL P+G
Sbjct: 188 T----------------------HQPDP-MAEQSNNGSQNFQIPIGGIPFYDPSSLSPMG 247

Query: 121 IPDLNISLEEFAQRNYSKIKAAQARQRRIRICKTKNSNAAIKLQS 156
           IPDLNISLEE  QRNYS+  AA+AR+ RI+ICK KN N   KLQ+
Sbjct: 248 IPDLNISLEEINQRNYSRFMAARARKNRIQICKNKN-NGVTKLQT 268

BLAST of MS016899 vs. NCBI nr
Match: KAG6585540.1 (hypothetical protein SDJN03_18273, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 115.9 bits (289), Expect = 3.0e-22
Identity = 84/165 (50.91%), Postives = 103/165 (62.42%), Query Frame = 0

Query: 1   EIEAVKRHYNHLKTINSELKAKKQKMM---PSFYNGSPQPETGSSSSAMEIAQ-LTVKSS 60
           E EA+K+HYNHLK INSELKAKKQ+M+    S  N S  PE G+SSSAME+ + LTV+SS
Sbjct: 123 EFEAMKQHYNHLKAINSELKAKKQEMILGSNSSKNESAIPEIGTSSSAMEVVKLLTVESS 182

Query: 61  SPTLENHHHQHQQQQKQNHNHHRHYPQPSIKNQTPEPSQSFQIPP-----YD-TSLGPIG 120
           +                      H P P +  Q+   SQ+FQIP      YD +SL P+G
Sbjct: 183 T----------------------HQPAP-MAEQSNNGSQNFQIPIGGIPFYDPSSLSPMG 242

Query: 121 IPDLNISLEEFAQRNYSKIKAAQARQRRIRICKTKNSNAAIKLQS 156
           IPDLNISLEE  QRNYS+  AA+AR+ RI+ICK KN N   KLQ+
Sbjct: 243 IPDLNISLEEINQRNYSRFMAARARKNRIQICKNKN-NGVTKLQT 263

BLAST of MS016899 vs. ExPASy TrEMBL
Match: A0A6J1CSM9 (uncharacterized protein LOC111013942 OS=Momordica charantia OX=3673 GN=LOC111013942 PE=4 SV=1)

HSP 1 Score: 247.7 bits (631), Expect = 3.2e-62
Identity = 129/130 (99.23%), Postives = 129/130 (99.23%), Query Frame = 0

Query: 26  MMPSFYNGSPQPETGSSSSAMEIAQLTVKSSSPTLENHHHQHQQQQKQNHNHHRHYPQPS 85
           MMPSFYNGSPQPETGSSSSAMEIAQLTVKSSSPTLENHHHQHQQQQKQNHN HRHYPQPS
Sbjct: 1   MMPSFYNGSPQPETGSSSSAMEIAQLTVKSSSPTLENHHHQHQQQQKQNHNRHRHYPQPS 60

Query: 86  IKNQTPEPSQSFQIPPYDTSLGPIGIPDLNISLEEFAQRNYSKIKAAQARQRRIRICKTK 145
           IKNQTPEPSQSFQIPPYDTSLGPIGIPDLNISLEEFAQRNYSKIKAAQARQRRIRICKTK
Sbjct: 61  IKNQTPEPSQSFQIPPYDTSLGPIGIPDLNISLEEFAQRNYSKIKAAQARQRRIRICKTK 120

Query: 146 NSNAAIKLQS 156
           NSNAAIKLQS
Sbjct: 121 NSNAAIKLQS 130

BLAST of MS016899 vs. ExPASy TrEMBL
Match: A0A0A0LRP1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G368820 PE=4 SV=1)

HSP 1 Score: 125.6 bits (314), Expect = 1.9e-25
Identity = 87/171 (50.88%), Postives = 111/171 (64.91%), Query Frame = 0

Query: 1   EIEAVKRHYNHLKTINSELKAKKQKMMPSFYNGSPQPETGSSSS-AMEIAQLTVKSSSPT 60
           +IEA+KRH+ +LKTINSELKAKKQ+++  F N S  P+ G+S+S AMEIA+LTVKSS   
Sbjct: 146 DIEAMKRHFINLKTINSELKAKKQEILGGFSNLSVNPKFGTSTSVAMEIAKLTVKSSDSN 205

Query: 61  LENHHHQHQQQQKQNHNHHRHYPQPSIKNQT---PEPSQSFQ--------IPPYDTSLGP 120
           +EN+H +                +PS+KNQT    E S S Q        IP YD SLGP
Sbjct: 206 VENNHDE---------------CEPSMKNQTVPVAEQSNSIQNYQIPIGGIPLYDPSLGP 265

Query: 121 IGIPDLNISLEEFAQRNYSKIKAAQARQRRIRICKTK----NSNAAIKLQS 156
           +GIPDLN+SLE+   +NY+K  AA+ARQ RI+I K K    N+N A KLQS
Sbjct: 266 MGIPDLNLSLEDILHKNYTKYLAAKARQNRIQIWKNKNNNNNNNGAPKLQS 301

BLAST of MS016899 vs. ExPASy TrEMBL
Match: A0A5A7VHE1 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold82G004970 PE=4 SV=1)

HSP 1 Score: 123.2 bits (308), Expect = 9.2e-25
Identity = 84/169 (49.70%), Postives = 112/169 (66.27%), Query Frame = 0

Query: 1   EIEAVKRHYNHLKTINSELKAKKQKMMPSFYNGSPQPETGSSSS-AMEIAQLTVKSSSPT 60
           +IEA+KRH+ +LKTINSELKAKKQ+++  F N S  PE G+SSS AME+A+LTVKSS   
Sbjct: 146 DIEAMKRHFINLKTINSELKAKKQEILDGFGNVSVNPEIGTSSSVAMEVAKLTVKSSYSN 205

Query: 61  LENHHHQHQQQQKQNHNHHRHYPQPSIKNQT------PEPSQSFQ-----IPPYDTSLGP 120
           +EN+H +                +PS+KNQT         ++++Q     IP YD SLGP
Sbjct: 206 VENNHDE---------------CEPSMKNQTVPTAEQGNSNRNYQIPIGGIPLYDPSLGP 265

Query: 121 IGIPDLNISLEEFAQRNYSKIKAAQARQRRIRICKTK--NSNAAIKLQS 156
           +GIPDLN+SLE+   ++Y+K  AA+ARQ RI+I K K  N+N A KLQS
Sbjct: 266 MGIPDLNLSLEDIFHKSYTKYLAARARQNRIQIWKNKNNNNNGAPKLQS 299

BLAST of MS016899 vs. ExPASy TrEMBL
Match: A0A1S3BAR4 (uncharacterized protein LOC103488049 OS=Cucumis melo OX=3656 GN=LOC103488049 PE=4 SV=1)

HSP 1 Score: 123.2 bits (308), Expect = 9.2e-25
Identity = 84/169 (49.70%), Postives = 112/169 (66.27%), Query Frame = 0

Query: 1   EIEAVKRHYNHLKTINSELKAKKQKMMPSFYNGSPQPETGSSSS-AMEIAQLTVKSSSPT 60
           +IEA+KRH+ +LKTINSELKAKKQ+++  F N S  PE G+SSS AME+A+LTVKSS   
Sbjct: 146 DIEAMKRHFINLKTINSELKAKKQEILDGFGNVSVNPEIGTSSSVAMEVAKLTVKSSYSN 205

Query: 61  LENHHHQHQQQQKQNHNHHRHYPQPSIKNQT------PEPSQSFQ-----IPPYDTSLGP 120
           +EN+H +                +PS+KNQT         ++++Q     IP YD SLGP
Sbjct: 206 VENNHDE---------------CEPSMKNQTVPTAEQGNSNRNYQIPIGGIPLYDPSLGP 265

Query: 121 IGIPDLNISLEEFAQRNYSKIKAAQARQRRIRICKTK--NSNAAIKLQS 156
           +GIPDLN+SLE+   ++Y+K  AA+ARQ RI+I K K  N+N A KLQS
Sbjct: 266 MGIPDLNLSLEDIFHKSYTKYLAARARQNRIQIWKNKNNNNNGAPKLQS 299

BLAST of MS016899 vs. ExPASy TrEMBL
Match: A0A6J1GI34 (uncharacterized protein LOC111454352 OS=Cucurbita moschata OX=3662 GN=LOC111454352 PE=4 SV=1)

HSP 1 Score: 116.3 bits (290), Expect = 1.1e-22
Identity = 84/165 (50.91%), Postives = 103/165 (62.42%), Query Frame = 0

Query: 1   EIEAVKRHYNHLKTINSELKAKKQKMM---PSFYNGSPQPETGSSSSAMEIAQ-LTVKSS 60
           E EA+K+HYNHLK INSELKAKKQ+M+    S  N S  PE G+SSSAME+ + LTV+SS
Sbjct: 128 EFEAMKQHYNHLKAINSELKAKKQEMILGSNSSKNESAIPEIGTSSSAMEVVKLLTVESS 187

Query: 61  SPTLENHHHQHQQQQKQNHNHHRHYPQPSIKNQTPEPSQSFQIPP-----YD-TSLGPIG 120
           +                      H P P +  Q+   SQ+FQIP      YD +SL P+G
Sbjct: 188 T----------------------HQPDP-MAEQSNNGSQNFQIPIGGIPFYDPSSLSPMG 247

Query: 121 IPDLNISLEEFAQRNYSKIKAAQARQRRIRICKTKNSNAAIKLQS 156
           IPDLNISLEE  QRNYS+  AA+AR+ RI+ICK KN N   KLQ+
Sbjct: 248 IPDLNISLEEINQRNYSRFMAARARKNRIQICKNKN-NGVTKLQT 268

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022144188.16.7e-6299.23uncharacterized protein LOC111013942 [Momordica charantia][more]
XP_011649664.13.8e-2550.88myocardin-related transcription factor A [Cucumis sativus] >KGN62681.1 hypotheti... [more]
XP_008444813.11.9e-2449.70PREDICTED: uncharacterized protein LOC103488049 [Cucumis melo] >KAA0065161.1 unc... [more]
XP_022951578.12.3e-2250.91uncharacterized protein LOC111454352 [Cucurbita moschata][more]
KAG6585540.13.0e-2250.91hypothetical protein SDJN03_18273, partial [Cucurbita argyrosperma subsp. sorori... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1CSM93.2e-6299.23uncharacterized protein LOC111013942 OS=Momordica charantia OX=3673 GN=LOC111013... [more]
A0A0A0LRP11.9e-2550.88Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G368820 PE=4 SV=1[more]
A0A5A7VHE19.2e-2549.70Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A1S3BAR49.2e-2549.70uncharacterized protein LOC103488049 OS=Cucumis melo OX=3656 GN=LOC103488049 PE=... [more]
A0A6J1GI341.1e-2250.91uncharacterized protein LOC111454352 OS=Cucurbita moschata OX=3662 GN=LOC1114543... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 28..105
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 29..64
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 83..102
NoneNo IPR availablePANTHERPTHR37614OS02G0121400 PROTEINcoord: 1..154

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS016899.1MS016899.1mRNA