MS016893 (gene) Bitter gourd (TR) v1

Overview
NameMS016893
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionPhotosystem II CP43 reaction center protein
Locationscaffold9_1: 862775 .. 862915 (+)
RNA-Seq ExpressionMS016893
SyntenyMS016893
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAAACCTTATATTCCCTGAGAAGGTTCTACCCTATGGAAACACTCTTTAATGGAACTTTAGCTTTAGCTGGTCGTGACCAAGAAACTACTAGTTTCGCTTGGTGGGTAGGGAATGCCCAACTTATCAATTTATGCGGT

mRNA sequence

ATGAAAACCTTATATTCCCTGAGAAGGTTCTACCCTATGGAAACACTCTTTAATGGAACTTTAGCTTTAGCTGGTCGTGACCAAGAAACTACTAGTTTCGCTTGGTGGGTAGGGAATGCCCAACTTATCAATTTATGCGGT

Coding sequence (CDS)

ATGAAAACCTTATATTCCCTGAGAAGGTTCTACCCTATGGAAACACTCTTTAATGGAACTTTAGCTTTAGCTGGTCGTGACCAAGAAACTACTAGTTTCGCTTGGTGGGTAGGGAATGCCCAACTTATCAATTTATGCGGT

Protein sequence

MKTLYSLRRFYPMETLFNGTLALAGRDQETTSFAWWVGNAQLINLCG
Homology
[Close]
BLAST of MS016893 vs. NCBI nr
Match: YP_009917162.1 (photosystem II CP43 chlorophyll apoprotein [Ziziphus incurva] >QDP70464.1 photosystem II CP43 chlorophyll apoprotein [Ziziphus incurva])

HSP 1 Score: 92.8 bits (229), Expect = 8.4e-16
Identity = 42/47 (89.36%), Postives = 44/47 (93.62%), Query Frame = 0 

Query: 1  MKTLYSLRRFYPMETLFNGTLALAGRDQETTSFAWWVGNAQLINLCG 48
          MKTLYSLRRFYP+ETLFNGTLALAGRDQETT FAWW GNA+LINL G
Sbjct: 1  MKTLYSLRRFYPVETLFNGTLALAGRDQETTGFAWWAGNARLINLSG 47

[Close]
BLAST of MS016893 vs. NCBI nr
Match: YP_009435235.1 (photosystem II 43 kDa protein [Lobelia malowensis] >YP_009435661.1 photosystem II 43 kDa protein [Lobelia thermalis] >ATG25237.1 photosystem II 43 kDa protein [Lobelia malowensis] >ATG25663.1 photosystem II 43 kDa protein [Lobelia thermalis])

HSP 1 Score: 92.8 bits (229), Expect = 8.4e-16
Identity = 42/47 (89.36%), Postives = 44/47 (93.62%), Query Frame = 0 

Query: 1  MKTLYSLRRFYPMETLFNGTLALAGRDQETTSFAWWVGNAQLINLCG 48
          MKTLYSLRRFYP+ETLFNGTLALAGRDQETT FAWW GNA+LINL G
Sbjct: 1  MKTLYSLRRFYPVETLFNGTLALAGRDQETTGFAWWAGNARLINLSG 47

[Close]
BLAST of MS016893 vs. NCBI nr
Match: YP_010119730.1 (photosystem II CP43 chlorophyll apoprotein [Hemsleya zhejiangensis] >QRC26928.1 photosystem II CP43 chlorophyll apoprotein [Hemsleya zhejiangensis])

HSP 1 Score: 92.8 bits (229), Expect = 8.4e-16
Identity = 42/47 (89.36%), Postives = 44/47 (93.62%), Query Frame = 0 

Query: 1  MKTLYSLRRFYPMETLFNGTLALAGRDQETTSFAWWVGNAQLINLCG 48
          MKTLYSLRRFYP+ETLFNGTLALAGRDQETT FAWW GNA+LINL G
Sbjct: 1  MKTLYSLRRFYPVETLFNGTLALAGRDQETTGFAWWAGNARLINLSG 47

[Close]
BLAST of MS016893 vs. NCBI nr
Match: AAS60076.1 (photosystem II CP43 protein, partial [Luzuriaga radicans])

HSP 1 Score: 92.8 bits (229), Expect = 8.4e-16
Identity = 42/47 (89.36%), Postives = 44/47 (93.62%), Query Frame = 0 

Query: 1  MKTLYSLRRFYPMETLFNGTLALAGRDQETTSFAWWVGNAQLINLCG 48
          MKTLYSLRRFYP+ETLFNGTLALAGRDQETT FAWW GNA+LINL G
Sbjct: 1  MKTLYSLRRFYPVETLFNGTLALAGRDQETTGFAWWAGNARLINLSG 47

[Close]
BLAST of MS016893 vs. NCBI nr
Match: YP_009828926.1 (PsbC [Impatiens hawkeri] >QJC59248.1 PsbC [Impatiens hawkeri])

HSP 1 Score: 92.8 bits (229), Expect = 8.4e-16
Identity = 42/47 (89.36%), Postives = 44/47 (93.62%), Query Frame = 0 

Query: 1  MKTLYSLRRFYPMETLFNGTLALAGRDQETTSFAWWVGNAQLINLCG 48
          MKTLYSLRRFYP+ETLFNGTLALAGRDQETT FAWW GNA+LINL G
Sbjct: 1  MKTLYSLRRFYPVETLFNGTLALAGRDQETTGFAWWAGNARLINLSG 47

[Close]
BLAST of MS016893 vs. ExPASy Swiss-Prot
Match: A9LYI1 (Photosystem II CP43 reaction center protein OS=Acorus americanus OX=263995 GN=psbC PE=3 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 1.1e-18
Identity = 42/47 (89.36%), Postives = 44/47 (93.62%), Query Frame = 0 

Query: 1  MKTLYSLRRFYPMETLFNGTLALAGRDQETTSFAWWVGNAQLINLCG 48
          MKTLYSLRRFYP+ETLFNGTLALAGRDQETT FAWW GNA+LINL G
Sbjct: 1  MKTLYSLRRFYPVETLFNGTLALAGRDQETTGFAWWAGNARLINLSG 47

[Close]
BLAST of MS016893 vs. ExPASy Swiss-Prot
Match: Q3V538 (Photosystem II CP43 reaction center protein OS=Acorus calamus OX=4465 GN=psbC PE=3 SV=2)

HSP 1 Score: 92.8 bits (229), Expect = 1.1e-18
Identity = 42/47 (89.36%), Postives = 44/47 (93.62%), Query Frame = 0 

Query: 1  MKTLYSLRRFYPMETLFNGTLALAGRDQETTSFAWWVGNAQLINLCG 48
          MKTLYSLRRFYP+ETLFNGTLALAGRDQETT FAWW GNA+LINL G
Sbjct: 1  MKTLYSLRRFYPVETLFNGTLALAGRDQETTGFAWWAGNARLINLSG 47

[Close]
BLAST of MS016893 vs. ExPASy Swiss-Prot
Match: Q70Y07 (Photosystem II CP43 reaction center protein OS=Amborella trichopoda OX=13333 GN=psbC PE=3 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 1.1e-18
Identity = 42/47 (89.36%), Postives = 44/47 (93.62%), Query Frame = 0 

Query: 1  MKTLYSLRRFYPMETLFNGTLALAGRDQETTSFAWWVGNAQLINLCG 48
          MKTLYSLRRFYP+ETLFNGTLALAGRDQETT FAWW GNA+LINL G
Sbjct: 1  MKTLYSLRRFYPVETLFNGTLALAGRDQETTGFAWWAGNARLINLSG 47

[Close]
BLAST of MS016893 vs. ExPASy Swiss-Prot
Match: A6MM32 (Photosystem II CP43 reaction center protein OS=Buxus microphylla OX=153571 GN=psbC PE=3 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 1.1e-18
Identity = 42/47 (89.36%), Postives = 44/47 (93.62%), Query Frame = 0 

Query: 1  MKTLYSLRRFYPMETLFNGTLALAGRDQETTSFAWWVGNAQLINLCG 48
          MKTLYSLRRFYP+ETLFNGTLALAGRDQETT FAWW GNA+LINL G
Sbjct: 1  MKTLYSLRRFYPVETLFNGTLALAGRDQETTGFAWWAGNARLINLSG 47

[Close]
BLAST of MS016893 vs. ExPASy Swiss-Prot
Match: Q7YJX6 (Photosystem II CP43 reaction center protein OS=Calycanthus floridus var. glaucus OX=212734 GN=psbC PE=3 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 1.1e-18
Identity = 42/47 (89.36%), Postives = 44/47 (93.62%), Query Frame = 0 

Query: 1  MKTLYSLRRFYPMETLFNGTLALAGRDQETTSFAWWVGNAQLINLCG 48
          MKTLYSLRRFYP+ETLFNGTLALAGRDQETT FAWW GNA+LINL G
Sbjct: 1  MKTLYSLRRFYPVETLFNGTLALAGRDQETTGFAWWAGNARLINLSG 47

[Close]
BLAST of MS016893 vs. ExPASy TrEMBL
Match: A0A251U4G7 (Putative photosystem antenna protein-like protein OS=Helianthus annuus OX=4232 GN=HannXRQ_Chr08g0221011 PE=4 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 1.4e-16
Identity = 43/47 (91.49%), Postives = 44/47 (93.62%), Query Frame = 0 

Query: 1  MKTLYSLRRFYPMETLFNGTLALAGRDQETTSFAWWVGNAQLINLCG 48
          MKTLYSLRRFYP+ETLFNGTLALAGRDQETT FAWW GNAQLINL G
Sbjct: 1  MKTLYSLRRFYPVETLFNGTLALAGRDQETTGFAWWAGNAQLINLSG 47

[Close]
BLAST of MS016893 vs. ExPASy TrEMBL
Match: A0A411D8D7 (Photosystem II CP43 reaction center protein OS=Salix koriyanagi OX=2511006 GN=psbC PE=3 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 4.0e-16
Identity = 42/47 (89.36%), Postives = 44/47 (93.62%), Query Frame = 0 

Query: 1  MKTLYSLRRFYPMETLFNGTLALAGRDQETTSFAWWVGNAQLINLCG 48
          MKTLYSLRRFYP+ETLFNGTLALAGRDQETT FAWW GNA+LINL G
Sbjct: 15 MKTLYSLRRFYPVETLFNGTLALAGRDQETTGFAWWAGNARLINLSG 61

[Close]
BLAST of MS016893 vs. ExPASy TrEMBL
Match: A0A0A6Z838 (Photosystem II CP43 reaction center protein OS=Macrozamia mountperriensis OX=707766 GN=psbC PE=3 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 4.0e-16
Identity = 42/47 (89.36%), Postives = 44/47 (93.62%), Query Frame = 0 

Query: 1  MKTLYSLRRFYPMETLFNGTLALAGRDQETTSFAWWVGNAQLINLCG 48
          MKTLYSLRRFYP+ETLFNGTLALAGRDQETT FAWW GNA+LINL G
Sbjct: 1  MKTLYSLRRFYPVETLFNGTLALAGRDQETTGFAWWAGNARLINLSG 47

[Close]
BLAST of MS016893 vs. ExPASy TrEMBL
Match: A0A0U2ICZ5 (Photosystem II CP43 reaction center protein OS=Oenothera oakesiana OX=482602 GN=psbC PE=3 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 4.0e-16
Identity = 42/47 (89.36%), Postives = 44/47 (93.62%), Query Frame = 0 

Query: 1  MKTLYSLRRFYPMETLFNGTLALAGRDQETTSFAWWVGNAQLINLCG 48
          MKTLYSLRRFYP+ETLFNGTLALAGRDQETT FAWW GNA+LINL G
Sbjct: 1  MKTLYSLRRFYPVETLFNGTLALAGRDQETTGFAWWAGNARLINLSG 47

[Close]
BLAST of MS016893 vs. ExPASy TrEMBL
Match: A0A0G3FF74 (Photosystem II CP43 reaction center protein OS=Podococcus barteri OX=101629 GN=psbC PE=3 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 4.0e-16
Identity = 42/47 (89.36%), Postives = 44/47 (93.62%), Query Frame = 0 

Query: 1  MKTLYSLRRFYPMETLFNGTLALAGRDQETTSFAWWVGNAQLINLCG 48
          MKTLYSLRRFYP+ETLFNGTLALAGRDQETT FAWW GNA+LINL G
Sbjct: 1  MKTLYSLRRFYPVETLFNGTLALAGRDQETTGFAWWAGNARLINLSG 47

[Close]
BLAST of MS016893 vs. TAIR 10
Match: ATCG00280.1 (photosystem II reaction center protein C )

HSP 1 Score: 89.4 bits (220), Expect = 8.6e-19
Identity = 41/47 (87.23%), Postives = 43/47 (91.49%), Query Frame = 0 

Query: 1  MKTLYSLRRFYPMETLFNGTLALAGRDQETTSFAWWVGNAQLINLCG 48
          MKTLYSLRRFY +ETLFNGTLALAGRDQETT FAWW GNA+LINL G
Sbjct: 1  MKTLYSLRRFYHVETLFNGTLALAGRDQETTGFAWWAGNARLINLSG 47

The following BLAST results are available for this feature:
BLAST of MS016893 vs. NCBI nr
Match NameE-valueIdentityDescription
YP_009917162.18.4e-1689.36photosystem II CP43 chlorophyll apoprotein [Ziziphus incurva] >QDP70464.1 photos... [more]
YP_009435235.18.4e-1689.36photosystem II 43 kDa protein [Lobelia malowensis] >YP_009435661.1 photosystem I... [more]
YP_010119730.18.4e-1689.36photosystem II CP43 chlorophyll apoprotein [Hemsleya zhejiangensis] >QRC26928.1 ... [more]
AAS60076.18.4e-1689.36photosystem II CP43 protein, partial [Luzuriaga radicans][more]
YP_009828926.18.4e-1689.36PsbC [Impatiens hawkeri] >QJC59248.1 PsbC [Impatiens hawkeri][more]
BLAST of MS016893 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
A9LYI11.1e-1889.36Photosystem II CP43 reaction center protein OS=Acorus americanus OX=263995 GN=ps... [more]
Q3V5381.1e-1889.36Photosystem II CP43 reaction center protein OS=Acorus calamus OX=4465 GN=psbC PE... [more]
Q70Y071.1e-1889.36Photosystem II CP43 reaction center protein OS=Amborella trichopoda OX=13333 GN=... [more]
A6MM321.1e-1889.36Photosystem II CP43 reaction center protein OS=Buxus microphylla OX=153571 GN=ps... [more]
Q7YJX61.1e-1889.36Photosystem II CP43 reaction center protein OS=Calycanthus floridus var. glaucus... [more]
BLAST of MS016893 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A251U4G71.4e-1691.49Putative photosystem antenna protein-like protein OS=Helianthus annuus OX=4232 G... [more]
A0A411D8D74.0e-1689.36Photosystem II CP43 reaction center protein OS=Salix koriyanagi OX=2511006 GN=ps... [more]
A0A0A6Z8384.0e-1689.36Photosystem II CP43 reaction center protein OS=Macrozamia mountperriensis OX=707... [more]
A0A0U2ICZ54.0e-1689.36Photosystem II CP43 reaction center protein OS=Oenothera oakesiana OX=482602 GN=... [more]
A0A0G3FF744.0e-1689.36Photosystem II CP43 reaction center protein OS=Podococcus barteri OX=101629 GN=p... [more]
BLAST of MS016893 vs. TAIR 10
Match NameE-valueIdentityDescription
ATCG00280.18.6e-1987.23photosystem II reaction center protein C [more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS016893.1MS016893.1mRNA