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Sequences
The following sequences are available for this feature:
Gene sequence (with intron) Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. GTGGGTTACAGCCGAGGTCAACAAGTCAACGCAAACGCTTCCGGAGAGAGAGAGAAAGCAGCGGGTGGTATTGGGCATCATGCCGCAAACCCGCTCCCCCACCAAGTGCATGATTATCGATACATCTCTCTTACGTGTCGTGTTCTCATTGGTCCGTCACGCCTCGTCGGGATTCATAGCAACA mRNA sequence GTGGGTTACAGCCGAGGTCAACAAGTCAACGCAAACGCTTCCGGAGAGAGAGAGAAAGCAGCGGGTGGTATTGGGATCATGCCGCAAACCCGCTCCCCCACCAAGTGCATGATTATCGATACATCTCTCTTACGTGTCGTGTTCTCATTGGTCCGTCACGCCTCGTCGGGATTCATAGCAACA Coding sequence (CDS) GTGGGTTACAGCCGAGGTCAACAAGTCAACGCAAACGCTTCCGGAGAGAGAGAGAAAGCAGCGGGTGGTATTGGGATCATGCCGCAAACCCGCTCCCCCACCAAGTGCATGATTATCGATACATCTCTCTTACGTGTCGTGTTCTCATTGGTCCGTCACGCCTCGTCGGGATTCATAGCAACA Protein sequence VGYSRGQQVNANASGEREKAAGGIGIMPQTRSPTKCMIIDTSLLRVVFSLVRHASSGFIAT
Homology
BLAST of MS016803 vs. NCBI nr
Match: KAE8652101.1 (hypothetical protein Csa_022635 [Cucumis sativus]) HSP 1 Score: 82.8 bits (203), Expect = 1.1e-12 Identity = 48/69 (69.57%), Postives = 52/69 (75.36%), Query Frame = 0
Query: 1 VGYSRGQQVNANAS------GERE-KAAGGIG-IMPQTRSPTKCMIIDTSLLRVVFSLVR 60
VGYS+GQQVN+ GE E + GGIG IMPQTRSPTKCMIIDTSLLRV+F VR
Sbjct: 13 VGYSKGQQVNSGKERKGGVVGEAEIETTGGIGSIMPQTRSPTKCMIIDTSLLRVIFLFVR 72
Query: 61 HASSGFIAT 62
H SSGFIAT
Sbjct: 73 HRSSGFIAT 81
BLAST of MS016803 vs. ExPASy TrEMBL
Match: A0A0A0LL03 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G361410 PE=4 SV=1) HSP 1 Score: 82.8 bits (203), Expect = 5.4e-13 Identity = 48/69 (69.57%), Postives = 52/69 (75.36%), Query Frame = 0
Query: 1 VGYSRGQQVNANAS------GERE-KAAGGIG-IMPQTRSPTKCMIIDTSLLRVVFSLVR 60
VGYS+GQQVN+ GE E + GGIG IMPQTRSPTKCMIIDTSLLRV+F VR
Sbjct: 13 VGYSKGQQVNSGKERKGGVVGEAEIETTGGIGSIMPQTRSPTKCMIIDTSLLRVIFLFVR 72
Query: 61 HASSGFIAT 62
H SSGFIAT
Sbjct: 73 HRSSGFIAT 81
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| KAE8652101.1 | 1.1e-12 | 69.57 | hypothetical protein Csa_022635 [Cucumis sativus] | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| A0A0A0LL03 | 5.4e-13 | 69.57 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G361410 PE=4 SV=1 | [more] |
| Match Name | E-value | Identity | Description | |
|---|
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
|---|
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 1..27 |
Relationships
The following mRNA feature(s) are a part of this gene:
| Feature Name | Unique Name | Type |
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| MS016803.1 | MS016803.1 | mRNA |
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