MS016604 (gene) Bitter gourd (TR) v1

Overview


Name	MS016604
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Agglutinin domain-containing protein
Location	scaffold442: 192268 .. 192636 (-)
RNA-Seq Expression	MS016604
Synteny	MS016604

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ACAACTTGGTCTGCTACCCTCTCATCCAAGATTGGTGTGACAACAAAATTCAAATTAGATGGGATTCCCAATATTGGAAGTGGAAGTGTTGAAATTTCAACTGAGCAGGGGAGTGAATATTCATGGGGAGAAACCCAAAAACACAGAAATAATTGAACTTACTTACCCTGTGACTGTGCCTCCAAATTCAAGAGTGGAGATTAATGCTGTGGTGAAACAAGGGATGTGCAAAGTTCCTTTCTCGTATTGTAAACTGATGTTTTCCATAATGGACAACGAGTCGTTCATAATCTACACGATGGACTTTTCATTGGCCTCAACTCCTACGACTATGAATTCATGTCTAAAGCTGTGCCAATGGAGTCACCA

mRNA sequence

ACAACTTGGTCTGCTACCCTCTCATCCAAGATTGGTGTGACAACAAAATTCAAATTAGATGGGATTCCCAATATTGGAAGTGGAAGTGTTGAAATTTCAACTGAGCAGGGGAGTGAATATTCATGGGGAGAAACCCAAAAACACAGAAATAATGAACTTACTTACCCTGTGACTGTGCCTCCAAATTCAAGAGTGGAGATTAATGCTGTGGTGAAACAAGGGATGTGCAAAGTTCCTTTCTCGTATTGTAAAGATGTTTTCCATAATGGACAACGAGTCGTTCATAATCTACACGATGGACTTTTCATTGGCCTCAACTCCTACGACTATGAATTCATGTCTAAAGCTGTGCCAATGGAGTCACCA

Coding sequence (CDS)

ACAACTTGGTCTGCTACCCTCTCATCCAAGATTGGTGTGACAACAAAATTCAAATTAGATGGGATTCCCAATATTGGAAGTGGAAGTGTTGAAATTTCAACTGAGCAGGGGAGTGAATATTCATGGGGAGAAACCCAAAAACACAGAAATAATGAACTTACTTACCCTGTGACTGTGCCTCCAAATTCAAGAGTGGAGATTAATGCTGTGGTGAAACAAGGGATGTGCAAAGTTCCTTTCTCGTATTGTAAAGATGTTTTCCATAATGGACAACGAGTCGTTCATAATCTACACGATGGACTTTTCATTGGCCTCAACTCCTACGACTATGAATTCATGTCTAAAGCTGTGCCAATGGAGTCACCA

Protein sequence

TTWSATLSSKIGVTTKFKLDGIPNIGSGSVEISTEQGSEYSWGETQKHRNNELTYPVTVPPNSRVEINAVVKQGMCKVPFSYCKDVFHNGQRVVHNLHDGLFIGLNSYDYEFMSKAVPMESP

Homology

[Close]

BLAST of MS016604 vs. NCBI nr
Match: XP_022157623.1 (uncharacterized protein LOC111024284 [Momordica charantia])

HSP 1 Score: 188.0 bits (476), Expect = 5.0e-44
Identity = 94/124 (75.81%), Postives = 108/124 (87.10%), Query Frame = 0


Query: 1   TTWSATLSSKIGVTTKFKLDGIPNIGSGSVEISTEQGSEYSWGETQKHRN-NELTYPVTV 60
           TTWSATLSSKIG+TTKFKL+GIP IGSGS+EISTE G+EYSWG+T KH++  ELTYPVTV
Sbjct: 376 TTWSATLSSKIGLTTKFKLNGIPIIGSGSIEISTELGTEYSWGKTDKHKSIIELTYPVTV 435

Query: 61  PPNSRVEINAVVKQGMCKVPFSYCK-DVFHNGQRVVHNLHDGLFIGLNSYDYEFMSKAVP 120
           PP SRVEI+AVVKQGMCKVPF+Y + DVF+NG+ V     DGLF G+NSYDYEF S+AVP
Sbjct: 436 PPMSRVEISAVVKQGMCKVPFTYRRNDVFYNGRTVTSYYSDGLFTGVNSYDYEFSSRAVP 495

Query: 121 MESP 123
           MESP
Sbjct: 496 MESP 499

[Close]

BLAST of MS016604 vs. NCBI nr
Match: XP_022155413.1 (uncharacterized protein LOC111022561 [Momordica charantia])

HSP 1 Score: 174.1 bits (440), Expect = 7.4e-40
Identity = 85/123 (69.11%), Postives = 101/123 (82.11%), Query Frame = 0


Query: 1   TTWSATLSSKIGVTTKFKLDGIPNIGSGSVEISTEQGSEYSWGETQKHRNN-ELTYPVTV 60
           T W++TLS+ IGVTTKF+  G+P +G G +E+S E GS Y WGET KH+N  EL YPVTV
Sbjct: 379 TNWTSTLSTNIGVTTKFQA-GVPIVGKGKIEVSAEIGSGYEWGETHKHKNTIELNYPVTV 438

Query: 61  PPNSRVEINAVVKQGMCKVPFSYCK-DVFHNGQRVVHNLHDGLFIGLNSYDYEFMSKAVP 120
           PP SRV+INAVVKQGMC+VPFSY + D+  NG+RVVH+LHDGLF G+NSYDYEFMSK VP
Sbjct: 439 PPISRVKINAVVKQGMCQVPFSYRRTDLLKNGRRVVHHLHDGLFSGVNSYDYEFMSKVVP 498

Query: 121 MES 122
           MES
Sbjct: 499 MES 500

[Close]

BLAST of MS016604 vs. NCBI nr
Match: XP_022157622.1 (uncharacterized protein LOC111024282 [Momordica charantia])

HSP 1 Score: 144.1 bits (362), Expect = 8.2e-31
Identity = 69/122 (56.56%), Postives = 92/122 (75.41%), Query Frame = 0


Query: 3   WSATLSSKIGVTTKFKLD-GIPNIGSGSVEISTEQGSEYSWGETQKHRN-NELTYPVTVP 62
           WS+++SSKIGV+   K   GIP++G G +E+  E G+EY WG T K +N  E TYPVTVP
Sbjct: 393 WSSSVSSKIGVSVSSKFQVGIPHVGEGKIEVLAEMGAEYEWGVTHKDKNVREFTYPVTVP 452

Query: 63  PNSRVEINAVVKQGMCKVPFSYCK-DVFHNGQRVVHNLHDGLFIGLNSYDYEFMSKAVPM 122
           P SRV+INAV+KQG+C+VPFSY + DV   G++VVH+L+DGLF G+NSYD+EF S+   +
Sbjct: 453 PMSRVKINAVIKQGICQVPFSYRRTDVLRTGRQVVHHLNDGLFTGVNSYDFEFKSETAAI 512

[Close]

BLAST of MS016604 vs. NCBI nr
Match: XP_022155409.1 (uncharacterized protein LOC111022557 [Momordica charantia])

HSP 1 Score: 106.3 bits (264), Expect = 1.9e-19
Identity = 53/117 (45.30%), Postives = 74/117 (63.25%), Query Frame = 0


Query: 3   WSATLSSKIGVTTKFKLDGIPNIGSGSVEISTEQGSEYSWGETQKH-RNNELTYPVTVPP 62
           W+  L  K GV+ +F   G+P IG GS+ +S   G EY+WGETQK  R    +  +TVPP
Sbjct: 390 WTNALGVKFGVSKQFTA-GVPMIGDGSITVSVVAGGEYAWGETQKEKRFMSCSSTITVPP 449

Query: 63  NSRVEINAVVKQGMCKVPFSYCK-DVFHNGQRVVHNLHDGLFIGLNSYDYEFMSKAV 118
            S+V++NA+VK+G C VPFSY K D   +G ++     DG+F G+ SYD++F S  V
Sbjct: 450 MSKVKMNAIVKRGFCNVPFSYTKIDTLRDGTQISREYDDGVFNGIQSYDFQFRSDKV 505

[Close]

BLAST of MS016604 vs. NCBI nr
Match: KAF7051157.1 (hypothetical protein CFC21_059427 [Triticum aestivum])

HSP 1 Score: 106.3 bits (264), Expect = 1.9e-19
Identity = 55/120 (45.83%), Postives = 76/120 (63.33%), Query Frame = 0


Query: 2   TWSATLSSKIGVTTKFKLDGIPNIGSGSVEISTEQGSEYSWGET-QKHRNNELTYPVTVP 61
           TWS+T+S KIGVTTK +  GIP I  G VE+STE  SEY WG + Q   + E +Y   VP
Sbjct: 405 TWSSTVSLKIGVTTKLRA-GIPVIAEGKVEVSTEFNSEYEWGSSIQTTTSQEASYQAVVP 464

Query: 62  PNSRVEINAVVKQGMCKVPFSYC-KDVFHNGQRVVHNLHDGLFIGLNSYDYEFMSKAVPM 120
           P ++V I A   QG   VPFSY  +D+   G+ V + + DGLF G+N+Y+++F +   P+
Sbjct: 465 PMTKVTIRAAATQGSIDVPFSYTQRDILITGEVVTYKMDDGLFTGMNNYNFQFEATQEPI 523

[Close]

BLAST of MS016604 vs. ExPASy TrEMBL
Match: A0A6J1DTU6 (uncharacterized protein LOC111024284 OS=Momordica charantia OX=3673 GN=LOC111024284 PE=3 SV=1)

HSP 1 Score: 188.0 bits (476), Expect = 2.4e-44
Identity = 94/124 (75.81%), Postives = 108/124 (87.10%), Query Frame = 0


Query: 1   TTWSATLSSKIGVTTKFKLDGIPNIGSGSVEISTEQGSEYSWGETQKHRN-NELTYPVTV 60
           TTWSATLSSKIG+TTKFKL+GIP IGSGS+EISTE G+EYSWG+T KH++  ELTYPVTV
Sbjct: 376 TTWSATLSSKIGLTTKFKLNGIPIIGSGSIEISTELGTEYSWGKTDKHKSIIELTYPVTV 435

Query: 61  PPNSRVEINAVVKQGMCKVPFSYCK-DVFHNGQRVVHNLHDGLFIGLNSYDYEFMSKAVP 120
           PP SRVEI+AVVKQGMCKVPF+Y + DVF+NG+ V     DGLF G+NSYDYEF S+AVP
Sbjct: 436 PPMSRVEISAVVKQGMCKVPFTYRRNDVFYNGRTVTSYYSDGLFTGVNSYDYEFSSRAVP 495

Query: 121 MESP 123
           MESP
Sbjct: 496 MESP 499

[Close]

BLAST of MS016604 vs. ExPASy TrEMBL
Match: A0A6J1DMW2 (uncharacterized protein LOC111022561 OS=Momordica charantia OX=3673 GN=LOC111022561 PE=4 SV=1)

HSP 1 Score: 174.1 bits (440), Expect = 3.6e-40
Identity = 85/123 (69.11%), Postives = 101/123 (82.11%), Query Frame = 0


Query: 1   TTWSATLSSKIGVTTKFKLDGIPNIGSGSVEISTEQGSEYSWGETQKHRNN-ELTYPVTV 60
           T W++TLS+ IGVTTKF+  G+P +G G +E+S E GS Y WGET KH+N  EL YPVTV
Sbjct: 379 TNWTSTLSTNIGVTTKFQA-GVPIVGKGKIEVSAEIGSGYEWGETHKHKNTIELNYPVTV 438

Query: 61  PPNSRVEINAVVKQGMCKVPFSYCK-DVFHNGQRVVHNLHDGLFIGLNSYDYEFMSKAVP 120
           PP SRV+INAVVKQGMC+VPFSY + D+  NG+RVVH+LHDGLF G+NSYDYEFMSK VP
Sbjct: 439 PPISRVKINAVVKQGMCQVPFSYRRTDLLKNGRRVVHHLHDGLFSGVNSYDYEFMSKVVP 498

Query: 121 MES 122
           MES
Sbjct: 499 MES 500

[Close]

BLAST of MS016604 vs. ExPASy TrEMBL
Match: A0A6J1DUY9 (uncharacterized protein LOC111024282 OS=Momordica charantia OX=3673 GN=LOC111024282 PE=4 SV=1)

HSP 1 Score: 144.1 bits (362), Expect = 4.0e-31
Identity = 69/122 (56.56%), Postives = 92/122 (75.41%), Query Frame = 0


Query: 3   WSATLSSKIGVTTKFKLD-GIPNIGSGSVEISTEQGSEYSWGETQKHRN-NELTYPVTVP 62
           WS+++SSKIGV+   K   GIP++G G +E+  E G+EY WG T K +N  E TYPVTVP
Sbjct: 393 WSSSVSSKIGVSVSSKFQVGIPHVGEGKIEVLAEMGAEYEWGVTHKDKNVREFTYPVTVP 452

Query: 63  PNSRVEINAVVKQGMCKVPFSYCK-DVFHNGQRVVHNLHDGLFIGLNSYDYEFMSKAVPM 122
           P SRV+INAV+KQG+C+VPFSY + DV   G++VVH+L+DGLF G+NSYD+EF S+   +
Sbjct: 453 PMSRVKINAVIKQGICQVPFSYRRTDVLRTGRQVVHHLNDGLFTGVNSYDFEFKSETAAI 512

[Close]

BLAST of MS016604 vs. ExPASy TrEMBL
Match: M8A350 (Natterin-4 OS=Triticum urartu OX=4572 GN=TRIUR3_01514 PE=3 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 9.2e-20
Identity = 55/120 (45.83%), Postives = 76/120 (63.33%), Query Frame = 0


Query: 2   TWSATLSSKIGVTTKFKLDGIPNIGSGSVEISTEQGSEYSWGET-QKHRNNELTYPVTVP 61
           TWS+T+S KIGVT K +  GIP I  G VE+STE  SEY WG + Q   + E +Y   VP
Sbjct: 409 TWSSTVSLKIGVTAKLRA-GIPVIAEGKVEVSTEFNSEYEWGSSIQTTASKEASYQAVVP 468

Query: 62  PNSRVEINAVVKQGMCKVPFSYC-KDVFHNGQRVVHNLHDGLFIGLNSYDYEFMSKAVPM 120
           P ++V I A V QG   VPFSY  +D+   G+ V + + DGLF G+N+Y+++F +   P+
Sbjct: 469 PMTKVTIRAAVTQGSVDVPFSYTQRDILTTGEVVTYKMDDGLFTGMNNYNFQFETTQEPI 527

[Close]

BLAST of MS016604 vs. ExPASy TrEMBL
Match: A0A3B6IWY8 (Agglutinin domain-containing protein OS=Triticum aestivum OX=4565 PE=3 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 9.2e-20
Identity = 55/120 (45.83%), Postives = 76/120 (63.33%), Query Frame = 0


Query: 2   TWSATLSSKIGVTTKFKLDGIPNIGSGSVEISTEQGSEYSWGET-QKHRNNELTYPVTVP 61
           TWS+T+S KIGVTTK +  GIP I  G VE+STE  SEY WG + Q   + E +Y   VP
Sbjct: 405 TWSSTVSLKIGVTTKLRA-GIPVIAEGKVEVSTEFNSEYEWGSSIQTTTSQEASYQAVVP 464

Query: 62  PNSRVEINAVVKQGMCKVPFSYC-KDVFHNGQRVVHNLHDGLFIGLNSYDYEFMSKAVPM 120
           P ++V I A   QG   VPFSY  +D+   G+ V + + DGLF G+N+Y+++F +   P+
Sbjct: 465 PMTKVTIRAAATQGSIDVPFSYTQRDILITGEVVTYKMDDGLFTGMNNYNFQFEATQEPI 523

The following BLAST results are available for this feature:

BLAST of MS016604 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022157623.1	5.0e-44	75.81	uncharacterized protein LOC111024284 [Momordica charantia]	[more]
XP_022155413.1	7.4e-40	69.11	uncharacterized protein LOC111022561 [Momordica charantia]	[more]
XP_022157622.1	8.2e-31	56.56	uncharacterized protein LOC111024282 [Momordica charantia]	[more]
XP_022155409.1	1.9e-19	45.30	uncharacterized protein LOC111022557 [Momordica charantia]	[more]
KAF7051157.1	1.9e-19	45.83	hypothetical protein CFC21_059427 [Triticum aestivum]	[more]

BLAST of MS016604 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MS016604 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DTU6	2.4e-44	75.81	uncharacterized protein LOC111024284 OS=Momordica charantia OX=3673 GN=LOC111024...	[more]
A0A6J1DMW2	3.6e-40	69.11	uncharacterized protein LOC111022561 OS=Momordica charantia OX=3673 GN=LOC111022...	[more]
A0A6J1DUY9	4.0e-31	56.56	uncharacterized protein LOC111024282 OS=Momordica charantia OX=3673 GN=LOC111024...	[more]
M8A350	9.2e-20	45.83	Natterin-4 OS=Triticum urartu OX=4572 GN=TRIUR3_01514 PE=3 SV=1	[more]
A0A3B6IWY8	9.2e-20	45.83	Agglutinin domain-containing protein OS=Triticum aestivum OX=4565 PE=3 SV=1	[more]

BLAST of MS016604 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	2.170.15.10	Proaerolysin, chain A, domain 3	coord: 1..116 e-value: 8.2E-24 score: 86.1
None	No IPR available	PANTHER	PTHR39244	NATTERIN-4	coord: 2..119
None	No IPR available	CDD	cd20216	PFM_HFR-2-like	coord: 1..115 e-value: 1.2011E-42 score: 135.408
None	No IPR available	SUPERFAMILY	56973	Aerolisin/ETX pore-forming domain	coord: 2..111

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS016604.1	MS016604.1	mRNA