MS016598 (gene) Bitter gourd (TR) v1

Overview


Name	MS016598
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	CCHC-type domain-containing protein
Location	scaffold442: 11173 .. 11397 (-)
RNA-Seq Expression	MS016598
Synteny	MS016598

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

CTTATTGCTATTGTGAACAAGGTGGGAGAAGTACTGGAGGTGGAGCAGAGTCAAAGCGGTGAATATTGGGGAAAGTTTGCTAGAGTTAGAGTTAAGCTTCACATTTCTAAACCTCTACGTAGGGGTGTTTTAATGAAGATGAATGGCAGTGAGGATGAGTTGTGGATTCCACTACGGTATGAAAAATTGCTCGCCTTTTGTTACTTCTGTGGTTTGATTGGTCAT

mRNA sequence

CTTATTGCTATTGTGAACAAGGTGGGAGAAGTACTGGAGGTGGAGCAGAGTCAAAGCGGTGAATATTGGGGAAAGTTTGCTAGAGTTAGAGTTAAGCTTCACATTTCTAAACCTCTACGTAGGGGTGTTTTAATGAAGATGAATGGCAGTGAGGATGAGTTGTGGATTCCACTACGGTATGAAAAATTGCTCGCCTTTTGTTACTTCTGTGGTTTGATTGGTCAT

Coding sequence (CDS)

CTTATTGCTATTGTGAACAAGGTGGGAGAAGTACTGGAGGTGGAGCAGAGTCAAAGCGGTGAATATTGGGGAAAGTTTGCTAGAGTTAGAGTTAAGCTTCACATTTCTAAACCTCTACGTAGGGGTGTTTTAATGAAGATGAATGGCAGTGAGGATGAGTTGTGGATTCCACTACGGTATGAAAAATTGCTCGCCTTTTGTTACTTCTGTGGTTTGATTGGTCAT

Protein sequence

LIAIVNKVGEVLEVEQSQSGEYWGKFARVRVKLHISKPLRRGVLMKMNGSEDELWIPLRYEKLLAFCYFCGLIGH

Homology

[Close]

BLAST of MS016598 vs. NCBI nr
Match: XP_030508922.1 (uncharacterized protein LOC115723572 [Cannabis sativa])

HSP 1 Score: 85.5 bits (210), Expect = 2.1e-13
Identity = 36/73 (49.32%), Postives = 50/73 (68.49%), Query Frame = 0


Query: 3   AIVNKVGEVLEVEQSQSGEYWGKFARVRVKLHISKPLRRGVLMKMNGSEDELWIPLRYEK 62
           A+ N +GE LEV    + E WG F R+RVKL ++KPL RG+++K+   +DE WI  RYE+
Sbjct: 144 ALGNIIGEFLEVHDDSTNEGWGPFLRIRVKLLVTKPLMRGLMIKLLKIKDEFWIDFRYER 203

Query: 63  LLAFCYFCGLIGH 76
           L  FC+ CG +GH
Sbjct: 204 LPEFCFECGCLGH 216

[Close]

BLAST of MS016598 vs. NCBI nr
Match: KAF4400882.1 (hypothetical protein G4B88_004425 [Cannabis sativa])

HSP 1 Score: 84.3 bits (207), Expect = 4.7e-13
Identity = 36/72 (50.00%), Postives = 48/72 (66.67%), Query Frame = 0


Query: 4   IVNKVGEVLEVEQSQSGEYWGKFARVRVKLHISKPLRRGVLMKMNGSEDELWIPLRYEKL 63
           I N +G+ LEV      E WG F R+RV + +SKPL RG ++ +   +DELWI  RYE++
Sbjct: 42  IGNLIGDFLEVHDDSLNEGWGPFLRIRVGIDVSKPLLRGQMVTLPWLQDELWIEYRYERM 101

Query: 64  LAFCYFCGLIGH 76
           L FCY CG+IGH
Sbjct: 102 LDFCYSCGIIGH 113

[Close]

BLAST of MS016598 vs. NCBI nr
Match: KAF4349800.1 (hypothetical protein F8388_001078 [Cannabis sativa])

HSP 1 Score: 83.6 bits (205), Expect = 8.1e-13
Identity = 36/73 (49.32%), Postives = 48/73 (65.75%), Query Frame = 0


Query: 3   AIVNKVGEVLEVEQSQSGEYWGKFARVRVKLHISKPLRRGVLMKMNGSEDELWIPLRYEK 62
           A+ N +GE LEV    + E WG F R+RVKL ++KPL RG ++K+    DE WI  RYE+
Sbjct: 118 ALGNLIGEFLEVFDDSTNEGWGPFLRIRVKLCVTKPLPRGRMIKLPNIRDEFWIDFRYER 177

Query: 63  LLAFCYFCGLIGH 76
           L  FC+ CG +GH
Sbjct: 178 LPVFCFECGRLGH 190

[Close]

BLAST of MS016598 vs. NCBI nr
Match: XP_024924622.1 (uncharacterized protein LOC112489822 [Ziziphus jujuba])

HSP 1 Score: 82.8 bits (203), Expect = 1.4e-12
Identity = 34/76 (44.74%), Postives = 57/76 (75.00%), Query Frame = 0


Query: 2   IAIVNKVGEVLEVEQSQSGEYWGKFARVRVKLH--ISKPLRRGVLMKMNGSEDELWIPLR 61
           +AI +++G++L V+  + G  WGK+ RVRV+++  I KPLRRG+L++ +G+ D  W+  +
Sbjct: 89  MAIGSQLGDLLSVDSDEEGHCWGKYMRVRVRVNIDIQKPLRRGMLIRFDGA-DSFWVEFQ 148

Query: 62  YEKLLAFCYFCGLIGH 76
           YE+LL FC+ CG++GH
Sbjct: 149 YERLLEFCFTCGMLGH 163

[Close]

BLAST of MS016598 vs. NCBI nr
Match: KAF4362718.1 (hypothetical protein G4B88_018336 [Cannabis sativa])

HSP 1 Score: 81.6 bits (200), Expect = 3.1e-12
Identity = 36/70 (51.43%), Postives = 46/70 (65.71%), Query Frame = 0


Query: 6   NKVGEVLEVEQSQSGEYWGKFARVRVKLHISKPLRRGVLMKMNGSEDELWIPLRYEKLLA 65
           N +G+ LEV +    E WG F R+RV++ +SKPL RG L+      DELWI  RYE+L  
Sbjct: 140 NMIGKFLEVFEDSLNEGWGPFLRMRVEIDVSKPLLRGQLVTFPWMNDELWIDYRYERLPD 199

Query: 66  FCYFCGLIGH 76
           FCY CG+IGH
Sbjct: 200 FCYECGIIGH 209

[Close]

BLAST of MS016598 vs. ExPASy TrEMBL
Match: A0A803QHU2 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 1.0e-13
Identity = 35/73 (47.95%), Postives = 49/73 (67.12%), Query Frame = 0


Query: 3   AIVNKVGEVLEVEQSQSGEYWGKFARVRVKLHISKPLRRGVLMKMNGSEDELWIPLRYEK 62
           A+ N +GE LEV    + E WG F R+RVKL ++KPL RG ++K+   +DE W+  RYE+
Sbjct: 148 ALGNIIGEFLEVHDDSTNEGWGPFLRIRVKLQVTKPLMRGQMIKLPKIKDEFWVDFRYER 207

Query: 63  LLAFCYFCGLIGH 76
           L  FC+ CG +GH
Sbjct: 208 LPEFCFECGCLGH 220

[Close]

BLAST of MS016598 vs. ExPASy TrEMBL
Match: A0A7J6I007 (Uncharacterized protein OS=Cannabis sativa OX=3483 GN=G4B88_004425 PE=4 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 2.3e-13
Identity = 36/72 (50.00%), Postives = 48/72 (66.67%), Query Frame = 0


Query: 4   IVNKVGEVLEVEQSQSGEYWGKFARVRVKLHISKPLRRGVLMKMNGSEDELWIPLRYEKL 63
           I N +G+ LEV      E WG F R+RV + +SKPL RG ++ +   +DELWI  RYE++
Sbjct: 42  IGNLIGDFLEVHDDSLNEGWGPFLRIRVGIDVSKPLLRGQMVTLPWLQDELWIEYRYERM 101

Query: 64  LAFCYFCGLIGH 76
           L FCY CG+IGH
Sbjct: 102 LDFCYSCGIIGH 113

[Close]

BLAST of MS016598 vs. ExPASy TrEMBL
Match: A0A803P614 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 3.0e-13
Identity = 35/73 (47.95%), Postives = 48/73 (65.75%), Query Frame = 0


Query: 3   AIVNKVGEVLEVEQSQSGEYWGKFARVRVKLHISKPLRRGVLMKMNGSEDELWIPLRYEK 62
           A+ N +GE LEV    + E WG F R+RVKL ++KPL RG ++K+    DE W+  RYE+
Sbjct: 148 ALGNIIGEFLEVHDDSTNEGWGPFLRIRVKLLVTKPLMRGQMIKLPKIRDEFWVDFRYER 207

Query: 63  LLAFCYFCGLIGH 76
           L  FC+ CG +GH
Sbjct: 208 LPEFCFECGCLGH 220

[Close]

BLAST of MS016598 vs. ExPASy TrEMBL
Match: A0A7J6DVQ6 (CCHC-type domain-containing protein OS=Cannabis sativa OX=3483 GN=F8388_001078 PE=4 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 3.9e-13
Identity = 36/73 (49.32%), Postives = 48/73 (65.75%), Query Frame = 0


Query: 3   AIVNKVGEVLEVEQSQSGEYWGKFARVRVKLHISKPLRRGVLMKMNGSEDELWIPLRYEK 62
           A+ N +GE LEV    + E WG F R+RVKL ++KPL RG ++K+    DE WI  RYE+
Sbjct: 118 ALGNLIGEFLEVFDDSTNEGWGPFLRIRVKLCVTKPLPRGRMIKLPNIRDEFWIDFRYER 177

Query: 63  LLAFCYFCGLIGH 76
           L  FC+ CG +GH
Sbjct: 178 LPVFCFECGRLGH 190

[Close]

BLAST of MS016598 vs. ExPASy TrEMBL
Match: A0A803QHU7 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 5.1e-13
Identity = 35/74 (47.30%), Postives = 50/74 (67.57%), Query Frame = 0


Query: 2   IAIVNKVGEVLEVEQSQSGEYWGKFARVRVKLHISKPLRRGVLMKMNGSEDELWIPLRYE 61
           IA+ N +GE L+V +    E WG F RVRVKL +SKPL+RG ++ ++   D+ W+  RYE
Sbjct: 103 IALGNIIGEFLDVFEDSLNEGWGPFLRVRVKLDVSKPLKRGRMISLSNVRDKFWVDFRYE 162

Query: 62  KLLAFCYFCGLIGH 76
           +L  +C  CG+IGH
Sbjct: 163 RLPEYCMECGIIGH 176

[Close]

BLAST of MS016598 vs. TAIR 10
Match: AT2G01050.1 (zinc ion binding;nucleic acid binding )

HSP 1 Score: 42.7 bits (99), Expect = 1.5e-04
Identity = 26/75 (34.67%), Postives = 43/75 (57.33%), Query Frame = 0


Query: 1   LIAIVNKVGEVLEVEQSQSGEYWGKFARVRVKLHISKPLRRGVLMKMNGSEDELWIPLRY 60
           L+ I   +G  L+V+ +      G+FARV ++++++KPL+  VL  +NG  D  ++   Y
Sbjct: 183 LMEIARGLGRPLKVDMNTINFDKGRFARVCIEVNLAKPLKGTVL--ING--DRYFV--AY 242

Query: 61  EKLLAFCYFCGLIGH 76
           E L   C  CG+ GH
Sbjct: 243 EGLSKICSSCGIYGH 251

The following BLAST results are available for this feature:

BLAST of MS016598 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_030508922.1	2.1e-13	49.32	uncharacterized protein LOC115723572 [Cannabis sativa]	[more]
KAF4400882.1	4.7e-13	50.00	hypothetical protein G4B88_004425 [Cannabis sativa]	[more]
KAF4349800.1	8.1e-13	49.32	hypothetical protein F8388_001078 [Cannabis sativa]	[more]
XP_024924622.1	1.4e-12	44.74	uncharacterized protein LOC112489822 [Ziziphus jujuba]	[more]
KAF4362718.1	3.1e-12	51.43	hypothetical protein G4B88_018336 [Cannabis sativa]	[more]

BLAST of MS016598 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MS016598 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A803QHU2	1.0e-13	47.95	Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1	[more]
A0A7J6I007	2.3e-13	50.00	Uncharacterized protein OS=Cannabis sativa OX=3483 GN=G4B88_004425 PE=4 SV=1	[more]
A0A803P614	3.0e-13	47.95	Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1	[more]
A0A7J6DVQ6	3.9e-13	49.32	CCHC-type domain-containing protein OS=Cannabis sativa OX=3483 GN=F8388_001078 P...	[more]
A0A803QHU7	5.1e-13	47.30	Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1	[more]

BLAST of MS016598 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G01050.1	1.5e-04	34.67	zinc ion binding;nucleic acid binding	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR025836	Zinc knuckle CX2CX4HX4C	PFAM	PF14392	zf-CCHC_4	coord: 35..75 e-value: 1.5E-11 score: 43.8

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS016598.1	MS016598.1	mRNA