MS016522 (gene) Bitter gourd (TR) v1

Overview


Name	MS016522
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Cytochrome c oxidase subunit 5C
Location	scaffold657: 464488 .. 464679 (-)
RNA-Seq Expression	MS016522
Synteny	MS016522

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

CAGTTAGGGAAAATGGTTGGTCATGCTGCATATAAGGGACCAAGCATAATAAAGGAGATTGTGTATGGATTAGGGCTGGCCTTAATGGCTGGTGGCCTCTGGAAAATGCGCCATTGGAATGAACAGAGGAGGACCAAAGAGTTTTATGAGTTACTCGACCGAGGTGACGTCGGGGTTGTAGTTCAACACGAC

mRNA sequence

CAGTTAGGGAAAATGGTTGGTCATGCTGCATATAAGGGACCAAGCATAATAAAGGAGATTGTGTATGGATTAGGGCTGGCCTTAATGGCTGGTGGCCTCTGGAAAATGCGCCATTGGAATGAACAGAGGAGGACCAAAGAGTTTTATGAGTTACTCGACCGAGGTGACGTCGGGGTTGTAGTTCAACACGAC

Coding sequence (CDS)

CAGTTAGGGAAAATGGTTGGTCATGCTGCATATAAGGGACCAAGCATAATAAAGGAGATTGTGTATGGATTAGGGCTGGCCTTAATGGCTGGTGGCCTCTGGAAAATGCGCCATTGGAATGAACAGAGGAGGACCAAAGAGTTTTATGAGTTACTCGACCGAGGTGACGTCGGGGTTGTAGTTCAACACGAC

Protein sequence

QLGKMVGHAAYKGPSIIKEIVYGLGLALMAGGLWKMRHWNEQRRTKEFYELLDRGDVGVVVQHD

Homology

[Close]

BLAST of MS016522 vs. NCBI nr
Match: XP_023528587.1 (putative cytochrome c oxidase subunit 5C-4 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 105.5 bits (262), Expect = 1.7e-19
Identity = 45/60 (75.00%), Postives = 52/60 (86.67%), Query Frame = 0


Query: 5  MVGHAAYKGPSIIKEIVYGLGLALMAGGLWKMRHWNEQRRTKEFYELLDRGDVGVVVQHD 64
          MVG+  YKGPS+IKEI+YG+G+ LMAGGLWKM HWN QRRTKEFYELLDRGD+ VV+  D
Sbjct: 1  MVGNVVYKGPSVIKEIIYGVGVGLMAGGLWKMHHWNYQRRTKEFYELLDRGDITVVLPED 60

[Close]

BLAST of MS016522 vs. NCBI nr
Match: XP_022935291.1 (putative cytochrome c oxidase subunit 5C-4 [Cucurbita moschata] >XP_022935292.1 putative cytochrome c oxidase subunit 5C-4 [Cucurbita moschata])

HSP 1 Score: 104.8 bits (260), Expect = 2.9e-19
Identity = 45/60 (75.00%), Postives = 51/60 (85.00%), Query Frame = 0


Query: 5  MVGHAAYKGPSIIKEIVYGLGLALMAGGLWKMRHWNEQRRTKEFYELLDRGDVGVVVQHD 64
          MVG   YKGPS+IKEI+YG+G+ LMAGGLWKM HWN QRRTKEFYELLDRGD+ VV+  D
Sbjct: 1  MVGSVVYKGPSVIKEIIYGVGVGLMAGGLWKMHHWNYQRRTKEFYELLDRGDITVVLPED 60

[Close]

BLAST of MS016522 vs. NCBI nr
Match: XP_022983411.1 (putative cytochrome c oxidase subunit 5C-4 [Cucurbita maxima] >XP_022983412.1 putative cytochrome c oxidase subunit 5C-4 [Cucurbita maxima])

HSP 1 Score: 104.0 bits (258), Expect = 4.9e-19
Identity = 45/60 (75.00%), Postives = 51/60 (85.00%), Query Frame = 0


Query: 5  MVGHAAYKGPSIIKEIVYGLGLALMAGGLWKMRHWNEQRRTKEFYELLDRGDVGVVVQHD 64
          MVG+  YKGPS IKEI+YG+G+ LMAGGLWKM HWN QRRTKEFYELLDRGD+ VV+  D
Sbjct: 1  MVGNVVYKGPSAIKEIIYGVGVGLMAGGLWKMHHWNYQRRTKEFYELLDRGDITVVLPED 60

[Close]

BLAST of MS016522 vs. NCBI nr
Match: XP_038906018.1 (putative cytochrome c oxidase subunit 5C-4 [Benincasa hispida])

HSP 1 Score: 103.6 bits (257), Expect = 6.5e-19
Identity = 47/61 (77.05%), Postives = 53/61 (86.89%), Query Frame = 0


Query: 5  MVGHAA-YKGPSIIKEIVYGLGLALMAGGLWKMRHWNEQRRTKEFYELLDRGDVGVVVQH 64
          MVG  A YKGPSIIKEI+YG+G+ LMAGGLWKM HWN QR+TKEFYELLDRGD+ VV+Q 
Sbjct: 1  MVGVVAYYKGPSIIKEIIYGVGIGLMAGGLWKMHHWNYQRKTKEFYELLDRGDITVVIQE 60

[Close]

BLAST of MS016522 vs. NCBI nr
Match: XP_042503015.1 (putative cytochrome c oxidase subunit 5C-4 [Macadamia integrifolia])

HSP 1 Score: 100.9 bits (250), Expect = 4.2e-18
Identity = 40/59 (67.80%), Postives = 52/59 (88.14%), Query Frame = 0


Query: 6  VGHAAYKGPSIIKEIVYGLGLALMAGGLWKMRHWNEQRRTKEFYELLDRGDVGVVVQHD 65
          +GHA Y+GPS++KEI+YG+ L LMAGGLWKM HWN QRRTKEFY+LL++GD+ VVV+ +
Sbjct: 7  IGHAVYRGPSVVKEIIYGMTLGLMAGGLWKMYHWNVQRRTKEFYDLLEKGDINVVVEDE 65

[Close]

BLAST of MS016522 vs. ExPASy Swiss-Prot
Match: Q9FNE0 (Putative cytochrome c oxidase subunit 5C-4 OS=Arabidopsis thaliana OX=3702 GN=At5g40382 PE=3 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 1.1e-18
Identity = 36/59 (61.02%), Postives = 48/59 (81.36%), Query Frame = 0


Query: 6  VGHAAYKGPSIIKEIVYGLGLALMAGGLWKMRHWNEQRRTKEFYELLDRGDVGVVVQHD 65
          +G A YKGPS++KEI+YG+ L    GGLWKM HWN QRRTKEFY+LL++G++ VVV+ +
Sbjct: 7  IGKAVYKGPSVVKEIIYGITLGFAVGGLWKMHHWNNQRRTKEFYDLLEKGEISVVVEDE 65

[Close]

BLAST of MS016522 vs. ExPASy Swiss-Prot
Match: Q9FLK2 (Probable cytochrome c oxidase subunit 5C-3 OS=Arabidopsis thaliana OX=3702 GN=At5g61310 PE=3 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 1.5e-18
Identity = 38/62 (61.29%), Postives = 49/62 (79.03%), Query Frame = 0


Query: 3  GKMVGHAAYKGPSIIKEIVYGLGLALMAGGLWKMRHWNEQRRTKEFYELLDRGDVGVVVQ 62
          G  + HA  KGPS++KE+V GL L L AGGLWKM HWNEQR+T+ FY+LL+RG++GVVV 
Sbjct: 3  GHKIAHATLKGPSVVKELVIGLTLGLAAGGLWKMHHWNEQRKTRVFYDLLERGEIGVVVT 62

Query: 63 HD 65
           +
Sbjct: 63 EE 64

[Close]

BLAST of MS016522 vs. ExPASy Swiss-Prot
Match: Q9LZQ0 (Cytochrome c oxidase subunit 5C-2 OS=Arabidopsis thaliana OX=3702 GN=At3g62400 PE=3 SV=1)

HSP 1 Score: 92.0 bits (227), Expect = 2.5e-18
Identity = 37/62 (59.68%), Postives = 48/62 (77.42%), Query Frame = 0


Query: 3  GKMVGHAAYKGPSIIKEIVYGLGLALMAGGLWKMRHWNEQRRTKEFYELLDRGDVGVVVQ 62
          G  V HA  KGPS++KE++ GL L L AGGLWKM HWNEQR+T+ FY+LL+RG++GVV  
Sbjct: 3  GHKVAHATLKGPSVVKELIIGLTLGLAAGGLWKMHHWNEQRKTRTFYDLLERGEIGVVAS 62

Query: 63 HD 65
           +
Sbjct: 63 EE 64

[Close]

BLAST of MS016522 vs. ExPASy Swiss-Prot
Match: P19173 (Cytochrome c oxidase subunit 5C OS=Ipomoea batatas OX=4120 GN=COX5C PE=1 SV=3)

HSP 1 Score: 89.0 bits (219), Expect = 2.2e-17
Identity = 35/62 (56.45%), Postives = 45/62 (72.58%), Query Frame = 0


Query: 3  GKMVGHAAYKGPSIIKEIVYGLGLALMAGGLWKMRHWNEQRRTKEFYELLDRGDVGVVVQ 62
          G  V H  YKGPS++KE+V G  L L+AGG WKM HWN QRRTKEFY++L++G + VV  
Sbjct: 3  GGHVAHLVYKGPSVVKELVIGFSLGLVAGGFWKMHHWNSQRRTKEFYDMLEKGQISVVAD 62

Query: 63 HD 65
           +
Sbjct: 63 EE 64

[Close]

BLAST of MS016522 vs. ExPASy Swiss-Prot
Match: O22912 (Probable cytochrome c oxidase subunit 5C-1 OS=Arabidopsis thaliana OX=3702 GN=At2g47380 PE=1 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 2.8e-17
Identity = 36/62 (58.06%), Postives = 46/62 (74.19%), Query Frame = 0


Query: 3  GKMVGHAAYKGPSIIKEIVYGLGLALMAGGLWKMRHWNEQRRTKEFYELLDRGDVGVVVQ 62
          G  V HA  KGPS++KE+  GL L L AGGLWKM HWNEQR+T+ FY+LL+RG++ VV  
Sbjct: 3  GHKVAHATLKGPSVVKELFIGLALGLAAGGLWKMHHWNEQRKTRTFYDLLERGEISVVAA 62

Query: 63 HD 65
           +
Sbjct: 63 EE 64

[Close]

BLAST of MS016522 vs. ExPASy TrEMBL
Match: A0A6J1F554 (putative cytochrome c oxidase subunit 5C-4 OS=Cucurbita moschata OX=3662 GN=LOC111442219 PE=3 SV=1)

HSP 1 Score: 104.8 bits (260), Expect = 1.4e-19
Identity = 45/60 (75.00%), Postives = 51/60 (85.00%), Query Frame = 0


Query: 5  MVGHAAYKGPSIIKEIVYGLGLALMAGGLWKMRHWNEQRRTKEFYELLDRGDVGVVVQHD 64
          MVG   YKGPS+IKEI+YG+G+ LMAGGLWKM HWN QRRTKEFYELLDRGD+ VV+  D
Sbjct: 1  MVGSVVYKGPSVIKEIIYGVGVGLMAGGLWKMHHWNYQRRTKEFYELLDRGDITVVLPED 60

[Close]

BLAST of MS016522 vs. ExPASy TrEMBL
Match: A0A6J1IZ83 (putative cytochrome c oxidase subunit 5C-4 OS=Cucurbita maxima OX=3661 GN=LOC111482021 PE=3 SV=1)

HSP 1 Score: 104.0 bits (258), Expect = 2.4e-19
Identity = 45/60 (75.00%), Postives = 51/60 (85.00%), Query Frame = 0


Query: 5  MVGHAAYKGPSIIKEIVYGLGLALMAGGLWKMRHWNEQRRTKEFYELLDRGDVGVVVQHD 64
          MVG+  YKGPS IKEI+YG+G+ LMAGGLWKM HWN QRRTKEFYELLDRGD+ VV+  D
Sbjct: 1  MVGNVVYKGPSAIKEIIYGVGVGLMAGGLWKMHHWNYQRRTKEFYELLDRGDITVVLPED 60

[Close]

BLAST of MS016522 vs. ExPASy TrEMBL
Match: A0A200RDF8 (Cytochrome c oxidase subunit Vc OS=Macleaya cordata OX=56857 GN=BVC80_887g39 PE=3 SV=1)

HSP 1 Score: 99.8 bits (247), Expect = 4.5e-18
Identity = 42/61 (68.85%), Postives = 52/61 (85.25%), Query Frame = 0


Query: 4  KMVGHAAYKGPSIIKEIVYGLGLALMAGGLWKMRHWNEQRRTKEFYELLDRGDVGVVVQH 63
          ++  H AYKGPSIIKEI+YGL L L+AGGLWKM HWN QRRTKEFY+LL++GD+ VVV+ 
Sbjct: 6  RIARHTAYKGPSIIKEIMYGLTLGLIAGGLWKMHHWNNQRRTKEFYDLLEKGDISVVVED 65

Query: 64 D 65
          +
Sbjct: 66 E 66

[Close]

BLAST of MS016522 vs. ExPASy TrEMBL
Match: M0ZI68 (Cytochrome c oxidase subunit 5C OS=Solanum tuberosum OX=4113 GN=102599311 PE=3 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 2.9e-17
Identity = 39/62 (62.90%), Postives = 50/62 (80.65%), Query Frame = 0


Query: 3  GKMVGHAAYKGPSIIKEIVYGLGLALMAGGLWKMRHWNEQRRTKEFYELLDRGDVGVVVQ 62
          G  + HAAYKGPS++KEIV G+ L ++AGGLWKM HWN QRRTKEFY+LLD+ ++ VVV 
Sbjct: 3  GSHIAHAAYKGPSVVKEIVIGIALGIVAGGLWKMHHWNNQRRTKEFYDLLDKNEISVVVN 62

Query: 63 HD 65
           +
Sbjct: 63 DE 64

[Close]

BLAST of MS016522 vs. ExPASy TrEMBL
Match: A0A4V3WJI0 (Uncharacterized protein OS=Camellia sinensis var. sinensis OX=542762 GN=TEA_020490 PE=3 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 2.9e-17
Identity = 41/61 (67.21%), Postives = 52/61 (85.25%), Query Frame = 0


Query: 4   KMVGHAAYKGPSIIKEIVYGLGLALMAGGLWKMRHWNEQRRTKEFYELLDRGDVGVVVQH 63
           KM G AAY GPSI+KEI+YG+ LALMAGGLWK+ HW+ QRRT+EFY+LLD+G++  VV+ 
Sbjct: 130 KMAGAAAYHGPSIVKEIIYGITLALMAGGLWKIHHWDLQRRTREFYDLLDKGNITTVVEE 189

Query: 64  D 65
           D
Sbjct: 190 D 190

[Close]

BLAST of MS016522 vs. TAIR 10
Match: AT5G40382.1 (Cytochrome c oxidase subunit Vc family protein )

HSP 1 Score: 93.2 bits (230), Expect = 8.1e-20
Identity = 36/59 (61.02%), Postives = 48/59 (81.36%), Query Frame = 0


Query: 6  VGHAAYKGPSIIKEIVYGLGLALMAGGLWKMRHWNEQRRTKEFYELLDRGDVGVVVQHD 65
          +G A YKGPS++KEI+YG+ L    GGLWKM HWN QRRTKEFY+LL++G++ VVV+ +
Sbjct: 7  IGKAVYKGPSVVKEIIYGITLGFAVGGLWKMHHWNNQRRTKEFYDLLEKGEISVVVEDE 65

[Close]

BLAST of MS016522 vs. TAIR 10
Match: AT5G61310.1 (Cytochrome c oxidase subunit Vc family protein )

HSP 1 Score: 92.8 bits (229), Expect = 1.1e-19
Identity = 38/62 (61.29%), Postives = 49/62 (79.03%), Query Frame = 0


Query: 3  GKMVGHAAYKGPSIIKEIVYGLGLALMAGGLWKMRHWNEQRRTKEFYELLDRGDVGVVVQ 62
          G  + HA  KGPS++KE+V GL L L AGGLWKM HWNEQR+T+ FY+LL+RG++GVVV 
Sbjct: 3  GHKIAHATLKGPSVVKELVIGLTLGLAAGGLWKMHHWNEQRKTRVFYDLLERGEIGVVVT 62

Query: 63 HD 65
           +
Sbjct: 63 EE 64

[Close]

BLAST of MS016522 vs. TAIR 10
Match: AT5G61310.2 (Cytochrome c oxidase subunit Vc family protein )

HSP 1 Score: 92.8 bits (229), Expect = 1.1e-19
Identity = 38/62 (61.29%), Postives = 49/62 (79.03%), Query Frame = 0


Query: 3  GKMVGHAAYKGPSIIKEIVYGLGLALMAGGLWKMRHWNEQRRTKEFYELLDRGDVGVVVQ 62
          G  + HA  KGPS++KE+V GL L L AGGLWKM HWNEQR+T+ FY+LL+RG++GVVV 
Sbjct: 3  GHKIAHATLKGPSVVKELVIGLTLGLAAGGLWKMHHWNEQRKTRVFYDLLERGEIGVVVT 62

Query: 63 HD 65
           +
Sbjct: 63 EE 64

[Close]

BLAST of MS016522 vs. TAIR 10
Match: AT5G61310.3 (Cytochrome c oxidase subunit Vc family protein )

HSP 1 Score: 92.8 bits (229), Expect = 1.1e-19
Identity = 38/62 (61.29%), Postives = 49/62 (79.03%), Query Frame = 0


Query: 3  GKMVGHAAYKGPSIIKEIVYGLGLALMAGGLWKMRHWNEQRRTKEFYELLDRGDVGVVVQ 62
          G  + HA  KGPS++KE+V GL L L AGGLWKM HWNEQR+T+ FY+LL+RG++GVVV 
Sbjct: 3  GHKIAHATLKGPSVVKELVIGLTLGLAAGGLWKMHHWNEQRKTRVFYDLLERGEIGVVVT 62

Query: 63 HD 65
           +
Sbjct: 63 EE 64

[Close]

BLAST of MS016522 vs. TAIR 10
Match: AT5G61310.4 (Cytochrome c oxidase subunit Vc family protein )

HSP 1 Score: 92.8 bits (229), Expect = 1.1e-19
Identity = 38/62 (61.29%), Postives = 49/62 (79.03%), Query Frame = 0


Query: 3  GKMVGHAAYKGPSIIKEIVYGLGLALMAGGLWKMRHWNEQRRTKEFYELLDRGDVGVVVQ 62
          G  + HA  KGPS++KE+V GL L L AGGLWKM HWNEQR+T+ FY+LL+RG++GVVV 
Sbjct: 3  GHKIAHATLKGPSVVKELVIGLTLGLAAGGLWKMHHWNEQRKTRVFYDLLERGEIGVVVT 62

Query: 63 HD 65
           +
Sbjct: 63 EE 64

The following BLAST results are available for this feature:

BLAST of MS016522 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023528587.1	1.7e-19	75.00	putative cytochrome c oxidase subunit 5C-4 [Cucurbita pepo subsp. pepo]	[more]
XP_022935291.1	2.9e-19	75.00	putative cytochrome c oxidase subunit 5C-4 [Cucurbita moschata] >XP_022935292.1 ...	[more]
XP_022983411.1	4.9e-19	75.00	putative cytochrome c oxidase subunit 5C-4 [Cucurbita maxima] >XP_022983412.1 pu...	[more]
XP_038906018.1	6.5e-19	77.05	putative cytochrome c oxidase subunit 5C-4 [Benincasa hispida]	[more]
XP_042503015.1	4.2e-18	67.80	putative cytochrome c oxidase subunit 5C-4 [Macadamia integrifolia]	[more]

BLAST of MS016522 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FNE0	1.1e-18	61.02	Putative cytochrome c oxidase subunit 5C-4 OS=Arabidopsis thaliana OX=3702 GN=At...	[more]
Q9FLK2	1.5e-18	61.29	Probable cytochrome c oxidase subunit 5C-3 OS=Arabidopsis thaliana OX=3702 GN=At...	[more]
Q9LZQ0	2.5e-18	59.68	Cytochrome c oxidase subunit 5C-2 OS=Arabidopsis thaliana OX=3702 GN=At3g62400 P...	[more]
P19173	2.2e-17	56.45	Cytochrome c oxidase subunit 5C OS=Ipomoea batatas OX=4120 GN=COX5C PE=1 SV=3	[more]
O22912	2.8e-17	58.06	Probable cytochrome c oxidase subunit 5C-1 OS=Arabidopsis thaliana OX=3702 GN=At...	[more]

BLAST of MS016522 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1F554	1.4e-19	75.00	putative cytochrome c oxidase subunit 5C-4 OS=Cucurbita moschata OX=3662 GN=LOC1...	[more]
A0A6J1IZ83	2.4e-19	75.00	putative cytochrome c oxidase subunit 5C-4 OS=Cucurbita maxima OX=3661 GN=LOC111...	[more]
A0A200RDF8	4.5e-18	68.85	Cytochrome c oxidase subunit Vc OS=Macleaya cordata OX=56857 GN=BVC80_887g39 PE=...	[more]
M0ZI68	2.9e-17	62.90	Cytochrome c oxidase subunit 5C OS=Solanum tuberosum OX=4113 GN=102599311 PE=3 S...	[more]
A0A4V3WJI0	2.9e-17	67.21	Uncharacterized protein OS=Camellia sinensis var. sinensis OX=542762 GN=TEA_0204...	[more]

BLAST of MS016522 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G40382.1	8.1e-20	61.02	Cytochrome c oxidase subunit Vc family protein	[more]
AT5G61310.1	1.1e-19	61.29	Cytochrome c oxidase subunit Vc family protein	[more]
AT5G61310.2	1.1e-19	61.29	Cytochrome c oxidase subunit Vc family protein	[more]
AT5G61310.3	1.1e-19	61.29	Cytochrome c oxidase subunit Vc family protein	[more]
AT5G61310.4	1.1e-19	61.29	Cytochrome c oxidase subunit Vc family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008432	Cytochrome c oxidase subunit 5c	PANTHER	PTHR34372	CYTOCHROME C OXIDASE SUBUNIT 5C-2-RELATED	coord: 3..63
None	No IPR available	PANTHER	PTHR34372:SF3	CYTOCHROME C OXIDASE SUBUNIT 5C-4-RELATED	coord: 3..63

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS016522.1	MS016522.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005746	mitochondrial respirasome