MS016512 (gene) Bitter gourd (TR) v1

Overview


Name	MS016512
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Peptide deformylase
Location	scaffold657: 337210 .. 342053 (+)
RNA-Seq Expression	MS016512
Synteny	MS016512

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTTACACGGCTCGATTACACCTTTCACTGCATCATGCTCTTCTTCCTCCGGCATACCGTCGCTTGGCTCTTCCCGCCGTTTTCCGCCGGCTGAGCTGTTTTTCTTCAACTAGCCAGTTCTTCTCCCACTCGAGTAAGCTCAGACCTCCGTCGACTCTTGTTTACGCGCAGGCCAAGCGAGGCTTCTCTGCCAAAGAAGACGATGCAGCTTCGTGTAAGCTCAAACCTCGAATTTTGTTTTTCAACTTGTAGTGCTATCTCTTTATGTTAGTTCTTCAATTTTTTTTACATTCGCTTATATAAACTAGCTAATAAGGCTGTGATTATTTAGCTGCTGATCTTGAATTTGAGGCGCCGCTCAAAATTGTGGAATATCCGGACCCAATACTCAGAGCAAAGAATAAGCGTATTGATTCATTTGATGATAATCTGAAGAAGCTAGTGCACGAAATGTTTGATGTAATGTATAAGTAAGTTTACGAAGCCTGCTACATTTCCTCTGGTAACTGGGTATTTGTATTCATACCATTTCATGAAAGAAGGATAAAACTCGTTAGTTGGCATATTTAGTCTTTTTTACATTTTCTTAATATACTCTCTCACTTGTGACCTCGGAAATTAGCACGAGATGCAGCAAGATGCTAATTAGGAGCAAATAATAGGTTTGCATGTAGAAACTCCTGGTCCGATGGCCAAACTTGCTTGTAAACCTAAAAGCAGCCAATAGGCTAGGACATATTAAATAATAGTCGAGGTGCGCATAGGCTGACCCATACACTCATGGATATCAAAATATTTTTAATATATTCTTAACATATACAGAATTTACAGAATTTGTAGAGGGTCAAGGCTCTCGATAAGTTTCATGTTTCTCTTTGGGTGTCTTTTTCTAAGGACTGTTGTAATTATCCTGTGGATCTTATTCTTTTAGATGGTAAGTATTTTCTATTTATTAGGTCTTTAGCCATTGTTTTTTACTCCCTTCTCTGGACTGTGGTATTTGTAAGCCTCTCTTGTATTTTGATGACCTGGAATTGAAGCAATTTAGCTTTACTTCTCTATAGTTGGGGTACCTACAAATGCCCCAAAGTTTGAACCGCGAGACATCAAGATTTTTGGTATTAAGCTCATCTAGAGGTTCGAATATGGGACCTTGGCCTTTGCCAACGGGGCCACCCTCGGAGGCAAGCACCTCTTGTATTATTTCATTTCCTCAATGAAAACCCTTCTTTTAAAAATTTATTTAGAGAATATACTTTTAACATATAAGTTCATTCTGTTCTTAGTCGGGTGATATCATTGATATGTGAAAGATTAAGTTCTTGTTACTATGCATGAATGATGAATTCTGAGTTAGGGCCATTATTACCTTCTGCTATTTACAGGAAAGTGAACAATACTTGTTGGCTTCATTGTCCACAGAACTGATGGTATTGGGCTCTCAGCACCTCAAGTGGGAGTTAATGTGCAACTGATGGTATTTAATCCAGTCGGTGAACGAGGTGAAGGGGAGGAAATTGTTCTAGTAAACCCAAGAGTTTTCAGATATTCCAAGAAAACTGTACTCTTCAATGAAGGTTGTTTGTCATTCCCGAGGATATATGCTGATGTAGAGGTACTGTTGAATAAGGGTTCTTTTCTCTCACTGCCTACTTTCAAGTTTAAGTATGGTGTTGAGTAGCTTTTTCCTAAACTTGATATTATGTTTTTCTCAACTAATTGAAATTTCAATTGGCCAAGCATTGAGTGTAATTTTCATTCAAAATTTGCAAAATATAGATATGCTCTAAATTACAGCATATTCGCCTTTTAAATGTACATGGAAACTTCGCTTCCTGTGCCTCAGAAATTCCGGGGTGATACTATTATTTAATATTTGGTCAGGCAATTAGTTGTTCTTTTAATGCTTTGTCTGAACTGAAACATTAAAGCAGTTTCTCTAGTTGTTAAATGATGTTGTTCACACACTACGAGTTTGTACGGAACATTTCACTTTAGAGGACCATACCTTCCCTGCTGCTGAACTCTGTTTCTTCTTCTTTGAGCTGTGATTGTGACGAGATGAGTTCATTTTTTTGGTAATTTCAGAGACCAGAATCAGTTAAGATCGATGCACGAGACATCAGCGGTACAAGGTTCATGGTCAACTTGTCAGGGCTCCCTGCAAGGGTTTTCCAGCATGAATTTGACCATTTGCAGGTCTTTTAATTAGTTTGAATTAAATTATTTTATGCAACATTTCCTTTTAACATTCTTTAATTTAACCGTGCCACACTTTCTTCCTCACAATCTCTTTTTTCAGCAACATTGCTCAATGCCATTCTACAAATGCATGATTAAATTGGTCTCTGTATTCTATGTTTTAATCACCACCAAGCATTTCTGTTGGCTCACAATTTTCCTAAGAGTGCTATTGAATTTGCAGGGAATTTTGTTCTTTGACAGAATGACGGATGAAGTACTCGATACCATTCGTGCTCAGCTGCAGGTGAGTGATCTCCCCTGCACATTGTTTCATCTTCTTTACCATAGGGAGTGGCATGTTAGTCTTTTTTATATCGGTCTGAATTTGAAAAGAAAATTAACATTGATGAGTTTGAACGGCGAGGTGAGAATGAAGCACCAAAACCTCCAGATTGTGGATAGGGTCCAAATTACTTATGAATTGGCGAAATAAGAACTTTATTGATGACAAAAAGCATTTACTATGGTATACTTCCCCTTATCAAAAAGAAATATGTTATGTAGCATCATAGAATGTACCGATATACTGAGCTTTACTTTGTTCCTATTTTTGCTGTGAAGGTGCCCCAGGGATAAAAGCTTAAGATATTTGGAGATACCTCCAAAGTCCTAGTCTCAAACTTCCAAATTGGGAACTTTTTTGTTTTTTAAAAATTTAGCTTATAAACACTGGAAACACTACTTTCACCCCGTGTTTCTATGTTTTGTTGTCTACTTTTTAATAACATTTTCAAAATCTAAACCAAAATTTGAAAACTAATGCTCGGTTTGATAACCATTTGGTTACGCTTGTTTGCTCACAATTTCTTTAGTATGTTTTAACTTTGTTTTAACTTTCTTAGAAACACATTTGAACTCTTAGCTAAATTTCAAAAACAAAAACAAATTCCTGATGAAAACTATTTTTTTTAGTTTTCAAATTTTAGCTTAGATTTTAAAATTATTTATAAAAAGTAAATGCAAAACAAAGAAATATACAAGTGAAAGTAGTGTTATTGTTTACCAGCTTGATTTTTAAAAATAGAAAACAAAACATAAAATAGTTATCCAATGGAGCCTAACAAAGTAGTTCTTAAAAACTTTTTTATTTTTTTTTATTTTAGTTTGGCTTGGACTAAAATAAATGTTGAAAAACATACCAAAGAAATTGAGGAAGAGTGGCATAATTTTAAGAAATAAAAAACTAAAACGAAAATAATGGGGGCATAACTTAAAACCTTTGTTCTCCACCTTGGGTGGTTGAATTGAAGTTTCCCCAAAAATTAGTGAGGTGGTCCAGGAGTATCATACAAGGAGTAGGGCATCCCTCCGTTATTTTAGAAACTCAAAGGAAAAGATATGTTCCTATTTTCTGAAGTTGGCTAATTTGAAGTTGCATTAAATTAGCCTTGTTTGAGACCTATGGGTTATTTTTCCTTCTCCATGAACTTTTAGATTTCATTGAAGACCCTTCTTGCATGAATAGGGGATTTTTTTCATCGTTCTTTTTGGTGTTCAGTAGTTGGCTTTTGTCTTCAGCATCTTCTTATTTGGACAGTAGATCAGATTTCGTTTATTGTGGTTTTGATTTCGAGTTCTCCATGGGGTGTCTTGCTCATCAGTGATTTATTTTGGCTCATACTGTTTGTGGGGACTTTTGCTATCTTTTTTATCACATTTTTTTCTCCTTTCGGGAGTTTGTATCTTTGAACTTTTTGTTCTTATTTTTTACTCATTAATGGAAAGTTTGTTTATCGTTTAAAAAAATTAAGAAGCACAAACTTTTGTCTTTTATAATAAATTTTTTTTTATAGAACTCTTTTCCCCCCTTTTTGTGTGTGATTCCACCAGTACAATAACGCTGGTCAAATCACTCCATTTACCATTCTAATAGGAATGCATTTGGAGTAATTTGGGAAATCAATAGAATAGTAAGGTATGGTAGTAATTAGTTAAGAAATTGGGGAGAAGGTATAAAGATAGACAATTGTTTTGTGTGGTTTAGATTTGAGTGGCCTCATTGGTAAAGGGCTTGAGGTCTCTTGATTATATCGGCTTAGAGGTCTGAAGTTTGAACGAATGAGTTTAATACAAAAAAAAACTCTTAATATATCTTGGATCCAGACTTTGGGGTAGGCGTAAGTGCCCCTGGTCTAGAGAGGCAAAGCTCCAACTCTCTGGTTATACAAACAGAAGAGAAAAATAAAATAAAATAAATAAAGTGATCTCAAGAGAGGGAGAGTCTAAGTACCTCAAATTACTTCGAGATTATTGTAGTCTAATCCTTTTATCTTTAAATCTATTCCAACTATTTGGTTTCTATCAAATTCTTGGAAACAACCTTGAACGTAAAAGTTGAAAGTTGTAGAATCAGTCCTAAGCACGTCGTCTAAGTTACCTCCGATTTTTAAGGAGCGAGCAACGTGTCTATCTTGCATTACGAGTCTCTGACACTTCGCCATTGAAAAGAGTGAGCCAAAGTTTCTGTTAATTATTACTTTGTGATGCAGGCCCTGGAAAAGAAGTATGAGGAGAGAACTGGATTACCAAGTCCTGAAAGAATAGAGAACTTCAGAACAAAGAAGAAAGTTGCTGCTGGTTATGGTTTTGGAAAGTCA

mRNA sequence

ATGGCTTACACGGCTCGATTACACCTTTCACTGCATCATGCTCTTCTTCCTCCGGCATACCGTCGCTTGGCTCTTCCCGCCGTTTTCCGCCGGCTGAGCTGTTTTTCTTCAACTAGCCAGTTCTTCTCCCACTCGAGTAAGCTCAGACCTCCGTCGACTCTTGTTTACGCGCAGGCCAAGCGAGGCTTCTCTGCCAAAGAAGACGATGCAGCTTCGTCTGCTGATCTTGAATTTGAGGCGCCGCTCAAAATTGTGGAATATCCGGACCCAATACTCAGAGCAAAGAATAAGCGTATTGATTCATTTGATGATAATCTGAAGAAGCTAGTGCACGAAATGTTTGATGTAATGTATAAAACTGATGGTATTGGGCTCTCAGCACCTCAAGTGGGAGTTAATGTGCAACTGATGGTATTTAATCCAGTCGGTGAACGAGGTGAAGGGGAGGAAATTGTTCTAGTAAACCCAAGAGTTTTCAGATATTCCAAGAAAACTGTACTCTTCAATGAAGGTTGTTTGTCATTCCCGAGGATATATGCTGATGTAGAGAGACCAGAATCAGTTAAGATCGATGCACGAGACATCAGCGGTACAAGGTTCATGGTCAACTTGTCAGGGCTCCCTGCAAGGGTTTTCCAGCATGAATTTGACCATTTGCAGGGAATTTTGTTCTTTGACAGAATGACGGATGAAGTACTCGATACCATTCGTGCTCAGCTGCAGGCCCTGGAAAAGAAGTATGAGGAGAGAACTGGATTACCAAGTCCTGAAAGAATAGAGAACTTCAGAACAAAGAAGAAAGTTGCTGCTGGTTATGGTTTTGGAAAGTCA

Coding sequence (CDS)

ATGGCTTACACGGCTCGATTACACCTTTCACTGCATCATGCTCTTCTTCCTCCGGCATACCGTCGCTTGGCTCTTCCCGCCGTTTTCCGCCGGCTGAGCTGTTTTTCTTCAACTAGCCAGTTCTTCTCCCACTCGAGTAAGCTCAGACCTCCGTCGACTCTTGTTTACGCGCAGGCCAAGCGAGGCTTCTCTGCCAAAGAAGACGATGCAGCTTCGTCTGCTGATCTTGAATTTGAGGCGCCGCTCAAAATTGTGGAATATCCGGACCCAATACTCAGAGCAAAGAATAAGCGTATTGATTCATTTGATGATAATCTGAAGAAGCTAGTGCACGAAATGTTTGATGTAATGTATAAAACTGATGGTATTGGGCTCTCAGCACCTCAAGTGGGAGTTAATGTGCAACTGATGGTATTTAATCCAGTCGGTGAACGAGGTGAAGGGGAGGAAATTGTTCTAGTAAACCCAAGAGTTTTCAGATATTCCAAGAAAACTGTACTCTTCAATGAAGGTTGTTTGTCATTCCCGAGGATATATGCTGATGTAGAGAGACCAGAATCAGTTAAGATCGATGCACGAGACATCAGCGGTACAAGGTTCATGGTCAACTTGTCAGGGCTCCCTGCAAGGGTTTTCCAGCATGAATTTGACCATTTGCAGGGAATTTTGTTCTTTGACAGAATGACGGATGAAGTACTCGATACCATTCGTGCTCAGCTGCAGGCCCTGGAAAAGAAGTATGAGGAGAGAACTGGATTACCAAGTCCTGAAAGAATAGAGAACTTCAGAACAAAGAAGAAAGTTGCTGCTGGTTATGGTTTTGGAAAGTCA

Protein sequence

MAYTARLHLSLHHALLPPAYRRLALPAVFRRLSCFSSTSQFFSHSSKLRPPSTLVYAQAKRGFSAKEDDAASSADLEFEAPLKIVEYPDPILRAKNKRIDSFDDNLKKLVHEMFDVMYKTDGIGLSAPQVGVNVQLMVFNPVGERGEGEEIVLVNPRVFRYSKKTVLFNEGCLSFPRIYADVERPESVKIDARDISGTRFMVNLSGLPARVFQHEFDHLQGILFFDRMTDEVLDTIRAQLQALEKKYEERTGLPSPERIENFRTKKKVAAGYGFGKS

Homology

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BLAST of MS016512 vs. NCBI nr
Match: XP_022152139.1 (peptide deformylase 1B, chloroplastic [Momordica charantia])

HSP 1 Score: 549.3 bits (1414), Expect = 1.9e-152
Identity = 276/277 (99.64%), Postives = 276/277 (99.64%), Query Frame = 0


Query: 1   MAYTARLHLSLHHALLPPAYRRLALPAVFRRLSCFSSTSQFFSHSSKLRPPSTLVYAQAK 60
           MAYTARLHLSLHHALLPPAYRRLALPAVFRRLSCFSSTSQFFSHSSKLRPPSTLVYAQAK
Sbjct: 1   MAYTARLHLSLHHALLPPAYRRLALPAVFRRLSCFSSTSQFFSHSSKLRPPSTLVYAQAK 60

Query: 61  RGFSAKEDDAASSADLEFEAPLKIVEYPDPILRAKNKRIDSFDDNLKKLVHEMFDVMYKT 120
           RGFSAKEDDAA SADLEFEAPLKIVEYPDPILRAKNKRIDSFDDNLKKLVHEMFDVMYKT
Sbjct: 61  RGFSAKEDDAALSADLEFEAPLKIVEYPDPILRAKNKRIDSFDDNLKKLVHEMFDVMYKT 120

Query: 121 DGIGLSAPQVGVNVQLMVFNPVGERGEGEEIVLVNPRVFRYSKKTVLFNEGCLSFPRIYA 180
           DGIGLSAPQVGVNVQLMVFNPVGERGEGEEIVLVNPRVFRYSKKTVLFNEGCLSFPRIYA
Sbjct: 121 DGIGLSAPQVGVNVQLMVFNPVGERGEGEEIVLVNPRVFRYSKKTVLFNEGCLSFPRIYA 180

Query: 181 DVERPESVKIDARDISGTRFMVNLSGLPARVFQHEFDHLQGILFFDRMTDEVLDTIRAQL 240
           DVERPESVKIDARDISGTRFMVNLSGLPARVFQHEFDHLQGILFFDRMTDEVLDTIRAQL
Sbjct: 181 DVERPESVKIDARDISGTRFMVNLSGLPARVFQHEFDHLQGILFFDRMTDEVLDTIRAQL 240

Query: 241 QALEKKYEERTGLPSPERIENFRTKKKVAAGYGFGKS 278
           QALEKKYEERTGLPSPERIENFRTKKKVAAGYGFGKS
Sbjct: 241 QALEKKYEERTGLPSPERIENFRTKKKVAAGYGFGKS 277

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BLAST of MS016512 vs. NCBI nr
Match: XP_022989167.1 (peptide deformylase 1B, chloroplastic [Cucurbita maxima])

HSP 1 Score: 487.6 bits (1254), Expect = 6.9e-134
Identity = 244/273 (89.38%), Postives = 257/273 (94.14%), Query Frame = 0


Query: 1   MAYTARLHLSLHHALLPPAYRRLALPAVFRRLSCFSSTSQFFSHSSKLRPPSTLVYAQAK 60
           MAYTARLH+SL HALLP   RR ALPAV RRLS FSST +  S+SSK RPP+TLVYAQAK
Sbjct: 1   MAYTARLHVSLPHALLPTLSRRSALPAVLRRLSRFSSTGRLLSNSSKFRPPTTLVYAQAK 60

Query: 61  RGFSAKEDDAASSADLEFEAPLKIVEYPDPILRAKNKRIDSFDDNLKKLVHEMFDVMYKT 120
           RGFS KEDD ASSADLEFEAPL+IVEYPDPILRAKNKRIDSFDDNLKKLV EMFDVMYKT
Sbjct: 61  RGFSTKEDDVASSADLEFEAPLQIVEYPDPILRAKNKRIDSFDDNLKKLVQEMFDVMYKT 120

Query: 121 DGIGLSAPQVGVNVQLMVFNPVGERGEGEEIVLVNPRVFRYSKKTVLFNEGCLSFPRIYA 180
           DGIGLSAPQVGVNVQLMVFNPVGERGEGEEIVLVNP+V+RYSKKT+LFNEGCLSFPRIYA
Sbjct: 121 DGIGLSAPQVGVNVQLMVFNPVGERGEGEEIVLVNPKVYRYSKKTILFNEGCLSFPRIYA 180

Query: 181 DVERPESVKIDARDISGTRFMVNLSGLPARVFQHEFDHLQGILFFDRMTDEVLDTIRAQL 240
           DV+RPESVKIDARDISGTRFMVNLSGLPARVFQHEFDHLQG+LFFDRMTDEVLDTIR QL
Sbjct: 181 DVQRPESVKIDARDISGTRFMVNLSGLPARVFQHEFDHLQGVLFFDRMTDEVLDTIRPQL 240

Query: 241 QALEKKYEERTGLPSPERIENFRTKKKVAAGYG 274
           QALEKKYE+RTGLPSPERIEN RT+KKVAAG+G
Sbjct: 241 QALEKKYEDRTGLPSPERIENLRTRKKVAAGFG 273

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BLAST of MS016512 vs. NCBI nr
Match: XP_022928203.1 (peptide deformylase 1B, chloroplastic [Cucurbita moschata])

HSP 1 Score: 487.3 bits (1253), Expect = 9.0e-134
Identity = 245/273 (89.74%), Postives = 256/273 (93.77%), Query Frame = 0


Query: 1   MAYTARLHLSLHHALLPPAYRRLALPAVFRRLSCFSSTSQFFSHSSKLRPPSTLVYAQAK 60
           MAYTARLHLSL HALLP   RR ALPAV RRLS FSST +  S+SSK RPP+TLVYAQAK
Sbjct: 1   MAYTARLHLSLPHALLPTLSRRSALPAVLRRLSRFSSTGELLSNSSKFRPPTTLVYAQAK 60

Query: 61  RGFSAKEDDAASSADLEFEAPLKIVEYPDPILRAKNKRIDSFDDNLKKLVHEMFDVMYKT 120
           RGFS KEDD ASSADLEFEAPL+IVEYPDPILRAKNKRIDSFDDNLKKLV EMFDVMYKT
Sbjct: 61  RGFSTKEDDVASSADLEFEAPLQIVEYPDPILRAKNKRIDSFDDNLKKLVQEMFDVMYKT 120

Query: 121 DGIGLSAPQVGVNVQLMVFNPVGERGEGEEIVLVNPRVFRYSKKTVLFNEGCLSFPRIYA 180
           DGIGLSAPQVGVNVQLMVFNPVGERGEGEEIVLVNP+V+RYSKKTVLFNEGCLSFP IYA
Sbjct: 121 DGIGLSAPQVGVNVQLMVFNPVGERGEGEEIVLVNPKVYRYSKKTVLFNEGCLSFPSIYA 180

Query: 181 DVERPESVKIDARDISGTRFMVNLSGLPARVFQHEFDHLQGILFFDRMTDEVLDTIRAQL 240
           DV+RPESVKIDARDISGTRFMVNLSGLPARVFQHEFDHLQG+LFFDRMTDEVLDTIR QL
Sbjct: 181 DVQRPESVKIDARDISGTRFMVNLSGLPARVFQHEFDHLQGVLFFDRMTDEVLDTIRPQL 240

Query: 241 QALEKKYEERTGLPSPERIENFRTKKKVAAGYG 274
           QALEKKYE+RTGLPSPERIEN RT+KKVAAG+G
Sbjct: 241 QALEKKYEDRTGLPSPERIENLRTRKKVAAGFG 273

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BLAST of MS016512 vs. NCBI nr
Match: XP_023530509.1 (peptide deformylase 1B, chloroplastic [Cucurbita pepo subsp. pepo])

HSP 1 Score: 484.6 bits (1246), Expect = 5.8e-133
Identity = 244/273 (89.38%), Postives = 255/273 (93.41%), Query Frame = 0


Query: 1   MAYTARLHLSLHHALLPPAYRRLALPAVFRRLSCFSSTSQFFSHSSKLRPPSTLVYAQAK 60
           MAYTARLHLSL HALLP   RR ALP V RRLS FSST +  S+SSK RPP+TLVYAQAK
Sbjct: 1   MAYTARLHLSLPHALLPTLSRRSALPTVLRRLSRFSSTGELLSNSSKFRPPTTLVYAQAK 60

Query: 61  RGFSAKEDDAASSADLEFEAPLKIVEYPDPILRAKNKRIDSFDDNLKKLVHEMFDVMYKT 120
           RGFS KEDD ASSADLEFEAPL+IVEYPDPILRAKNKRIDSFDDNLKKLV EMFDVMYKT
Sbjct: 61  RGFSTKEDDVASSADLEFEAPLQIVEYPDPILRAKNKRIDSFDDNLKKLVQEMFDVMYKT 120

Query: 121 DGIGLSAPQVGVNVQLMVFNPVGERGEGEEIVLVNPRVFRYSKKTVLFNEGCLSFPRIYA 180
           DGIGLSAPQVGVNVQLMVFNPVGERGEGEEIVLVNP+V+RYSKKTVLFNEGCLSFPRIYA
Sbjct: 121 DGIGLSAPQVGVNVQLMVFNPVGERGEGEEIVLVNPKVYRYSKKTVLFNEGCLSFPRIYA 180

Query: 181 DVERPESVKIDARDISGTRFMVNLSGLPARVFQHEFDHLQGILFFDRMTDEVLDTIRAQL 240
           DV+RPESVKIDARDISGTRFMVNLSGLPARVFQHEFDHLQG+LFFDRMTDEVLDTIR QL
Sbjct: 181 DVQRPESVKIDARDISGTRFMVNLSGLPARVFQHEFDHLQGVLFFDRMTDEVLDTIRPQL 240

Query: 241 QALEKKYEERTGLPSPERIENFRTKKKVAAGYG 274
           QALEKKYE+RTGL SPERIEN RT+KKVAAG+G
Sbjct: 241 QALEKKYEDRTGLRSPERIENLRTRKKVAAGFG 273

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BLAST of MS016512 vs. NCBI nr
Match: XP_038904020.1 (peptide deformylase 1B, chloroplastic [Benincasa hispida])

HSP 1 Score: 480.7 bits (1236), Expect = 8.4e-132
Identity = 244/273 (89.38%), Postives = 252/273 (92.31%), Query Frame = 0


Query: 1   MAYTARLHLSLHHALLPPAYRRLALPAVFRRLSCFSSTSQFFSHSSKLRPPSTLVYAQAK 60
           M YT RLHLSL HALLP   RRL+LPAVFRRLS F  T +FFSH SK RPPST+VYAQAK
Sbjct: 1   MEYTTRLHLSLQHALLPTVSRRLSLPAVFRRLSGFPLTGKFFSHWSKFRPPSTVVYAQAK 60

Query: 61  RGFSAKEDDAASSADLEFEAPLKIVEYPDPILRAKNKRIDSFDDNLKKLVHEMFDVMYKT 120
           RGFSAKEDD A S DLEFEAPLKIVEYPD ILRAKNKRIDSFDDNLKKLV EMFDVMYKT
Sbjct: 61  RGFSAKEDDVAKSVDLEFEAPLKIVEYPDKILRAKNKRIDSFDDNLKKLVREMFDVMYKT 120

Query: 121 DGIGLSAPQVGVNVQLMVFNPVGERGEGEEIVLVNPRVFRYSKKTVLFNEGCLSFPRIYA 180
           DGIGLSAPQVGVNVQLMVFNPVGERGEGEEIVLVNPRV+RYSKKTVLFNEGCLSFP IYA
Sbjct: 121 DGIGLSAPQVGVNVQLMVFNPVGERGEGEEIVLVNPRVYRYSKKTVLFNEGCLSFPMIYA 180

Query: 181 DVERPESVKIDARDISGTRFMVNLSGLPARVFQHEFDHLQGILFFDRMTDEVLDTIRAQL 240
           DVERPESVKIDARDISGTRFM NLSGLPARVFQHEFDHLQGILFFDRMTDEVLDTIR QL
Sbjct: 181 DVERPESVKIDARDISGTRFMFNLSGLPARVFQHEFDHLQGILFFDRMTDEVLDTIRPQL 240

Query: 241 QALEKKYEERTGLPSPERIENFRTKKKVAAGYG 274
           QALEKKYE++TGLPSPERIENFRT +KVAAG+G
Sbjct: 241 QALEKKYEDKTGLPSPERIENFRT-RKVAAGFG 272

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BLAST of MS016512 vs. ExPASy Swiss-Prot
Match: Q9FV54 (Peptide deformylase 1B, chloroplastic OS=Solanum lycopersicum OX=4081 GN=PDF1B PE=2 SV=1)

HSP 1 Score: 343.2 bits (879), Expect = 2.7e-93
Identity = 175/244 (71.72%), Postives = 201/244 (82.38%), Query Frame = 0


Query: 36  SSTSQFFSHSSKLRPPSTLVYAQAKRGFSAKE--DDAASSADLEFEAPLKIVEYPDPILR 95
           S+   FFS SS  +PP   VYAQA+R  S+K   D+ A+ ADL F  PLKIVEYPDPILR
Sbjct: 40  SANCLFFSASSN-KPPKLAVYAQARRVLSSKTKGDEIATPADLSFVVPLKIVEYPDPILR 99

Query: 96  AKNKRIDSFDDNLKKLVHEMFDVMYKTDGIGLSAPQVGVNVQLMVFNPVGERGEGEEIVL 155
           AKNKRID+FD NLKKLV EMFD+MYKTDGIGLSAPQVG+NVQLMVFN  GERGEGEEIVL
Sbjct: 100 AKNKRIDNFDANLKKLVDEMFDIMYKTDGIGLSAPQVGMNVQLMVFNAAGERGEGEEIVL 159

Query: 156 VNPRVFRYSKKTVLFNEGCLSFPRIYADVERPESVKIDARDISGTRFMVNLSGLPARVFQ 215
           VNPRV RYS++ + + EGCLSFP I+ DV+RPESVK+DA+DI+GTRF ++LS LPARVFQ
Sbjct: 160 VNPRVSRYSRRIIPYEEGCLSFPMIHGDVKRPESVKVDAQDINGTRFEISLSALPARVFQ 219

Query: 216 HEFDHLQGILFFDRMTDEVLDTIRAQLQALEKKYEERTGLPSPERIENFRTKKKVAAGYG 275
           HEFDHLQG+LFFD+MTDEVLDTIR +L ALEKKYE+RTGLP+PE I   + KK   A  G
Sbjct: 220 HEFDHLQGVLFFDKMTDEVLDTIREKLVALEKKYEDRTGLPTPESINTRKIKK---AAVG 279

Query: 276 FGKS 278
           FGKS
Sbjct: 280 FGKS 279

[Close]

BLAST of MS016512 vs. ExPASy Swiss-Prot
Match: Q9FUZ2 (Peptide deformylase 1B, chloroplastic/mitochondrial OS=Arabidopsis thaliana OX=3702 GN=PDF1B PE=1 SV=2)

HSP 1 Score: 337.0 bits (863), Expect = 2.0e-91
Identity = 174/269 (64.68%), Postives = 210/269 (78.07%), Query Frame = 0


Query: 15  LLPPAYRRLALPAVFRRLSCFS-------STSQFFSHSSKLRPPSTLVYAQAKRGFSAKE 74
           L  P   R+ LP + RR +  S       ST  F S  ++  P ++ V A+ KR  S K+
Sbjct: 8   LQAPPLSRILLPVLSRRATTLSAGYGRLKSTVTFCSTVNRTSPLTSSVRAEVKR-VSRKD 67

Query: 75  DDAASSADLEFEAPLKIVEYPDPILRAKNKRIDSFDDNLKKLVHEMFDVMYKTDGIGLSA 134
           D  AS+ D++FE PLKIVEYPDPILRAKNKRID FD+NLK LV  MFDVMYKTDGIGLSA
Sbjct: 68  DKVASATDVQFETPLKIVEYPDPILRAKNKRIDIFDENLKNLVDAMFDVMYKTDGIGLSA 127

Query: 135 PQVGVNVQLMVFNPVGERGEGEEIVLVNPRVFRYSKKTVLFNEGCLSFPRIYADVERPES 194
           PQVG+NVQLMVFNP GE GEG+EIVLVNP++ +YS K V F+EGCLSFP IYA+V RP+S
Sbjct: 128 PQVGLNVQLMVFNPAGEPGEGKEIVLVNPKIKKYSDKLVPFDEGCLSFPGIYAEVVRPQS 187

Query: 195 VKIDARDISGTRFMVNLSGLPARVFQHEFDHLQGILFFDRMTDEVLDTIRAQLQALEKKY 254
           VKIDARDI+G RF ++LS LPAR+FQHE+DHL+G+LFFDRMTD+VLD+IR +L+ALEKKY
Sbjct: 188 VKIDARDITGERFSISLSRLPARIFQHEYDHLEGVLFFDRMTDQVLDSIREELEALEKKY 247

Query: 255 EERTGLPSPERIENFRTKKKVAAGYGFGK 277
           EE+TGLPSPER+E    ++K  AG GFGK
Sbjct: 248 EEKTGLPSPERVE---ARQKRKAGVGFGK 272

[Close]

BLAST of MS016512 vs. ExPASy Swiss-Prot
Match: Q5VNN5 (Peptide deformylase 1B, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=PDF1B PE=2 SV=1)

HSP 1 Score: 303.5 bits (776), Expect = 2.4e-81
Identity = 148/229 (64.63%), Postives = 188/229 (82.10%), Query Frame = 0


Query: 46  SKLRPPSTLVYAQAKRGFS--------AKEDDAASSADLEFEAPLKIVEYPDPILRAKNK 105
           S++   + L  A+A+RGF         A+++D A++ADL+FE PLK+V+YPDPILRA+NK
Sbjct: 34  SRMGSVAPLAAARARRGFGSAVATAPPAEDEDFATAADLQFEPPLKVVKYPDPILRARNK 93

Query: 106 RIDSFDDNLKKLVHEMFDVMYKTDGIGLSAPQVGVNVQLMVFNPVGERGEGEEIVLVNPR 165
           RI++FDDNL+ L  EMFDVMYKTDGIGLSAPQVGVNVQLMVFNP G +GEGEEIVLVNP 
Sbjct: 94  RINTFDDNLRSLTDEMFDVMYKTDGIGLSAPQVGVNVQLMVFNPAGVKGEGEEIVLVNPV 153

Query: 166 VFRYSKKTVLFNEGCLSFPRIYADVERPESVKIDARDISGTRFMVNLSGLPARVFQHEFD 225
           V++ SK+ +++ EGCLSFP IYA+V RP++VKIDA+D++G +  V LSGL ARVFQHEFD
Sbjct: 154 VYKMSKRLLVYEEGCLSFPGIYANVVRPDNVKIDAQDVTGAKIKVKLSGLSARVFQHEFD 213

Query: 226 HLQGILFFDRMTDEVLDTIRAQLQALEKKYEERTGLPSPERIENFRTKK 267
           HLQGILFFDRM+ +VL+++R  L+ LEKKYEE TGL SPE IEN++ +K
Sbjct: 214 HLQGILFFDRMSLDVLESVREGLKDLEKKYEESTGLVSPESIENYKGRK 262

[Close]

BLAST of MS016512 vs. ExPASy Swiss-Prot
Match: Q7UHZ5 (Peptide deformylase OS=Rhodopirellula baltica (strain DSM 10527 / NCIMB 13988 / SH1) OX=243090 GN=def PE=3 SV=1)

HSP 1 Score: 147.5 bits (371), Expect = 2.2e-34
Identity = 73/175 (41.71%), Postives = 104/175 (59.43%), Query Frame = 0


Query: 81  PLKIVEYPDPILRAKNKRIDSFDDNLKKLVHEMFDVMYKTDGIGLSAPQVGVNVQLMVFN 140
           PL I+ +P P LR  ++ I   D  LK +  EM D+MY+ DG+GL+A QV + +++ V N
Sbjct: 2   PLSIIHFPHPTLRHVSRPIVRVDAKLKSMADEMLDLMYEFDGVGLAANQVDLPIRMFVAN 61

Query: 141 PVGERGEGEEIVLVNPRVFRYSKKTVLFNEGCLSFPRIYADVERPESVKIDARDISGTRF 200
           P G+R EGE  V++NP + R  K      EGCLS P +Y  V+RP++V++   D+ G   
Sbjct: 62  PTGKRDEGESWVILNPEIDR-PKGNDTAQEGCLSVPGLYGQVKRPKTVRLRGFDLQGNEI 121

Query: 201 MVNLSGLPARVFQHEFDHLQGILFFDRMTDEVLDTIRAQLQALEKKYEERTGLPS 256
              L G  ARV QHE DHL GI+FFDR+ +E L  +   L+  +  YE + G  S
Sbjct: 122 NQVLDGFMARVVQHEVDHLDGIMFFDRIGEEGLRDLEGHLEEFKTDYESKQGTGS 175

[Close]

BLAST of MS016512 vs. ExPASy Swiss-Prot
Match: B1XJP0 (Peptide deformylase OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) OX=32049 GN=def PE=3 SV=1)

HSP 1 Score: 139.0 bits (349), Expect = 7.9e-32
Identity = 64/152 (42.11%), Postives = 94/152 (61.84%), Query Frame = 0


Query: 81  PLKIVEYPDPILRAKNKRIDSFDDNLKKLVHEMFDVMYKTDGIGLSAPQVGVNVQLMVFN 140
           PL++    D +LR K KRI   DD ++ L  EM   MY + GIGL+APQVGVN +L+V +
Sbjct: 16  PLELHYLGDKVLRQKAKRIAKVDDEIRTLAKEMLQTMYSSQGIGLAAPQVGVNKRLIVID 75

Query: 141 PVGERGEGEEIVLVNPRVFRYSKKTVLFNEGCLSFPRIYADVERPESVKIDARDISGTRF 200
              E      +VL+NP + ++ ++   F EGCLS P ++ DV RP+ +++  RD  G   
Sbjct: 76  TDPENPANAPLVLINPEIKKFGQQLCPFEEGCLSIPGVHLDVIRPDEIEVSYRDEQGKPK 135

Query: 201 MVNLSGLPARVFQHEFDHLQGILFFDRMTDEV 233
            +  SGL +RV QHE DHL G++F DR+ +E+
Sbjct: 136 RIKASGLLSRVIQHEIDHLDGVMFVDRVENEI 167

[Close]

BLAST of MS016512 vs. ExPASy TrEMBL
Match: A0A6J1DF55 (Peptide deformylase OS=Momordica charantia OX=3673 GN=LOC111019929 PE=3 SV=1)

HSP 1 Score: 549.3 bits (1414), Expect = 9.3e-153
Identity = 276/277 (99.64%), Postives = 276/277 (99.64%), Query Frame = 0


Query: 1   MAYTARLHLSLHHALLPPAYRRLALPAVFRRLSCFSSTSQFFSHSSKLRPPSTLVYAQAK 60
           MAYTARLHLSLHHALLPPAYRRLALPAVFRRLSCFSSTSQFFSHSSKLRPPSTLVYAQAK
Sbjct: 1   MAYTARLHLSLHHALLPPAYRRLALPAVFRRLSCFSSTSQFFSHSSKLRPPSTLVYAQAK 60

Query: 61  RGFSAKEDDAASSADLEFEAPLKIVEYPDPILRAKNKRIDSFDDNLKKLVHEMFDVMYKT 120
           RGFSAKEDDAA SADLEFEAPLKIVEYPDPILRAKNKRIDSFDDNLKKLVHEMFDVMYKT
Sbjct: 61  RGFSAKEDDAALSADLEFEAPLKIVEYPDPILRAKNKRIDSFDDNLKKLVHEMFDVMYKT 120

Query: 121 DGIGLSAPQVGVNVQLMVFNPVGERGEGEEIVLVNPRVFRYSKKTVLFNEGCLSFPRIYA 180
           DGIGLSAPQVGVNVQLMVFNPVGERGEGEEIVLVNPRVFRYSKKTVLFNEGCLSFPRIYA
Sbjct: 121 DGIGLSAPQVGVNVQLMVFNPVGERGEGEEIVLVNPRVFRYSKKTVLFNEGCLSFPRIYA 180

Query: 181 DVERPESVKIDARDISGTRFMVNLSGLPARVFQHEFDHLQGILFFDRMTDEVLDTIRAQL 240
           DVERPESVKIDARDISGTRFMVNLSGLPARVFQHEFDHLQGILFFDRMTDEVLDTIRAQL
Sbjct: 181 DVERPESVKIDARDISGTRFMVNLSGLPARVFQHEFDHLQGILFFDRMTDEVLDTIRAQL 240

Query: 241 QALEKKYEERTGLPSPERIENFRTKKKVAAGYGFGKS 278
           QALEKKYEERTGLPSPERIENFRTKKKVAAGYGFGKS
Sbjct: 241 QALEKKYEERTGLPSPERIENFRTKKKVAAGYGFGKS 277

[Close]

BLAST of MS016512 vs. ExPASy TrEMBL
Match: A0A6J1JF23 (Peptide deformylase OS=Cucurbita maxima OX=3661 GN=LOC111486320 PE=3 SV=1)

HSP 1 Score: 487.6 bits (1254), Expect = 3.3e-134
Identity = 244/273 (89.38%), Postives = 257/273 (94.14%), Query Frame = 0


Query: 1   MAYTARLHLSLHHALLPPAYRRLALPAVFRRLSCFSSTSQFFSHSSKLRPPSTLVYAQAK 60
           MAYTARLH+SL HALLP   RR ALPAV RRLS FSST +  S+SSK RPP+TLVYAQAK
Sbjct: 1   MAYTARLHVSLPHALLPTLSRRSALPAVLRRLSRFSSTGRLLSNSSKFRPPTTLVYAQAK 60

Query: 61  RGFSAKEDDAASSADLEFEAPLKIVEYPDPILRAKNKRIDSFDDNLKKLVHEMFDVMYKT 120
           RGFS KEDD ASSADLEFEAPL+IVEYPDPILRAKNKRIDSFDDNLKKLV EMFDVMYKT
Sbjct: 61  RGFSTKEDDVASSADLEFEAPLQIVEYPDPILRAKNKRIDSFDDNLKKLVQEMFDVMYKT 120

Query: 121 DGIGLSAPQVGVNVQLMVFNPVGERGEGEEIVLVNPRVFRYSKKTVLFNEGCLSFPRIYA 180
           DGIGLSAPQVGVNVQLMVFNPVGERGEGEEIVLVNP+V+RYSKKT+LFNEGCLSFPRIYA
Sbjct: 121 DGIGLSAPQVGVNVQLMVFNPVGERGEGEEIVLVNPKVYRYSKKTILFNEGCLSFPRIYA 180

Query: 181 DVERPESVKIDARDISGTRFMVNLSGLPARVFQHEFDHLQGILFFDRMTDEVLDTIRAQL 240
           DV+RPESVKIDARDISGTRFMVNLSGLPARVFQHEFDHLQG+LFFDRMTDEVLDTIR QL
Sbjct: 181 DVQRPESVKIDARDISGTRFMVNLSGLPARVFQHEFDHLQGVLFFDRMTDEVLDTIRPQL 240

Query: 241 QALEKKYEERTGLPSPERIENFRTKKKVAAGYG 274
           QALEKKYE+RTGLPSPERIEN RT+KKVAAG+G
Sbjct: 241 QALEKKYEDRTGLPSPERIENLRTRKKVAAGFG 273

[Close]

BLAST of MS016512 vs. ExPASy TrEMBL
Match: A0A6J1EN89 (Peptide deformylase OS=Cucurbita moschata OX=3662 GN=LOC111435101 PE=3 SV=1)

HSP 1 Score: 487.3 bits (1253), Expect = 4.3e-134
Identity = 245/273 (89.74%), Postives = 256/273 (93.77%), Query Frame = 0


Query: 1   MAYTARLHLSLHHALLPPAYRRLALPAVFRRLSCFSSTSQFFSHSSKLRPPSTLVYAQAK 60
           MAYTARLHLSL HALLP   RR ALPAV RRLS FSST +  S+SSK RPP+TLVYAQAK
Sbjct: 1   MAYTARLHLSLPHALLPTLSRRSALPAVLRRLSRFSSTGELLSNSSKFRPPTTLVYAQAK 60

Query: 61  RGFSAKEDDAASSADLEFEAPLKIVEYPDPILRAKNKRIDSFDDNLKKLVHEMFDVMYKT 120
           RGFS KEDD ASSADLEFEAPL+IVEYPDPILRAKNKRIDSFDDNLKKLV EMFDVMYKT
Sbjct: 61  RGFSTKEDDVASSADLEFEAPLQIVEYPDPILRAKNKRIDSFDDNLKKLVQEMFDVMYKT 120

Query: 121 DGIGLSAPQVGVNVQLMVFNPVGERGEGEEIVLVNPRVFRYSKKTVLFNEGCLSFPRIYA 180
           DGIGLSAPQVGVNVQLMVFNPVGERGEGEEIVLVNP+V+RYSKKTVLFNEGCLSFP IYA
Sbjct: 121 DGIGLSAPQVGVNVQLMVFNPVGERGEGEEIVLVNPKVYRYSKKTVLFNEGCLSFPSIYA 180

Query: 181 DVERPESVKIDARDISGTRFMVNLSGLPARVFQHEFDHLQGILFFDRMTDEVLDTIRAQL 240
           DV+RPESVKIDARDISGTRFMVNLSGLPARVFQHEFDHLQG+LFFDRMTDEVLDTIR QL
Sbjct: 181 DVQRPESVKIDARDISGTRFMVNLSGLPARVFQHEFDHLQGVLFFDRMTDEVLDTIRPQL 240

Query: 241 QALEKKYEERTGLPSPERIENFRTKKKVAAGYG 274
           QALEKKYE+RTGLPSPERIEN RT+KKVAAG+G
Sbjct: 241 QALEKKYEDRTGLPSPERIENLRTRKKVAAGFG 273

[Close]

BLAST of MS016512 vs. ExPASy TrEMBL
Match: A0A0A0LG66 (Peptide deformylase OS=Cucumis sativus OX=3659 GN=Csa_3G837630 PE=3 SV=1)

HSP 1 Score: 462.6 bits (1189), Expect = 1.1e-126
Identity = 238/277 (85.92%), Postives = 247/277 (89.17%), Query Frame = 0


Query: 1   MAYTARLHLSLHHALLPPAYRRLALPAVFRRLSCFSSTSQFFSHSSKLRPPSTLVYAQAK 60
           MAY  RLH+SL HALLP     L+ PAVFRRLS FSST + FSHSSK + PSTLVYAQAK
Sbjct: 1   MAYATRLHISLPHALLPTVSCWLSPPAVFRRLSGFSSTCKLFSHSSKFKAPSTLVYAQAK 60

Query: 61  RGFSAKEDDAASSADLEFEAPLKIVEYPDPILRAKNKRIDSFDDNLKKLVHEMFDVMYKT 120
           RGFSAKEDD ASS DLEFEAPLKIVEYPDPILRAKNKRI SFDDNLKKLV EMFDVMYKT
Sbjct: 61  RGFSAKEDDVASSVDLEFEAPLKIVEYPDPILRAKNKRIGSFDDNLKKLVQEMFDVMYKT 120

Query: 121 DGIGLSAPQVGVNVQLMVFNPVGERGEGEEIVLVNPRVFRYSKKTVLFNEGCLSFPRIYA 180
           DGIGLSAPQVGVNVQLMVFN VGERGEGEEIVLVNP+V+RYSKKTVLFNEGCLSFP IYA
Sbjct: 121 DGIGLSAPQVGVNVQLMVFNSVGERGEGEEIVLVNPKVYRYSKKTVLFNEGCLSFPMIYA 180

Query: 181 DVERPESVKIDARDISGTRFMVNLSGLPARVFQHEFDHLQGILFFDRMTDEVLDTIRAQL 240
           DVERPES+KIDARDISGTRFMVNLSGL ARVFQHEFDHLQG LFFDRMTDEVL+TIR QL
Sbjct: 181 DVERPESIKIDARDISGTRFMVNLSGLSARVFQHEFDHLQGTLFFDRMTDEVLETIRPQL 240

Query: 241 QALEKKYEERTGLPSPERIENFRTKKKVAAGYGFGKS 278
           QALEKKYE+RTGLPSPERIENFR K     G GFGKS
Sbjct: 241 QALEKKYEDRTGLPSPERIENFRRK----VGAGFGKS 273

[Close]

BLAST of MS016512 vs. ExPASy TrEMBL
Match: A0A1S3B8C2 (Peptide deformylase OS=Cucumis melo OX=3656 GN=LOC103487104 PE=3 SV=1)

HSP 1 Score: 459.1 bits (1180), Expect = 1.3e-125
Identity = 236/273 (86.45%), Postives = 245/273 (89.74%), Query Frame = 0


Query: 1   MAYTARLHLSLHHALLPPAYRRLALPAVFRRLSCFSSTSQFFSHSSKLRPPSTLVYAQAK 60
           MAYT RLH+SL  ALLP     L+ P VFRRLS FSST    SHSSK R PSTLVYAQAK
Sbjct: 1   MAYTTRLHISLPRALLPTVSCWLSPPVVFRRLSGFSSTCTLISHSSKFRAPSTLVYAQAK 60

Query: 61  RGFSAKEDDAASSADLEFEAPLKIVEYPDPILRAKNKRIDSFDDNLKKLVHEMFDVMYKT 120
           RGF AKEDD ASS DLEFEAPLKIVEYPDPILRAKNKRIDSFDDNLKKLV EMFDVMYKT
Sbjct: 61  RGFYAKEDDVASSVDLEFEAPLKIVEYPDPILRAKNKRIDSFDDNLKKLVQEMFDVMYKT 120

Query: 121 DGIGLSAPQVGVNVQLMVFNPVGERGEGEEIVLVNPRVFRYSKKTVLFNEGCLSFPRIYA 180
           DGIGLSAPQVGVNVQLMVFNPVGERGEGEEIVLVNP+V+RYSKKTV FNEGCLSFP IYA
Sbjct: 121 DGIGLSAPQVGVNVQLMVFNPVGERGEGEEIVLVNPKVYRYSKKTVPFNEGCLSFPMIYA 180

Query: 181 DVERPESVKIDARDISGTRFMVNLSGLPARVFQHEFDHLQGILFFDRMTDEVLDTIRAQL 240
           DVERPES+KIDARDI GTRFMVNLSGL ARVFQHEFDHLQGILFFDRMTDEVL+TIR QL
Sbjct: 181 DVERPESIKIDARDIRGTRFMVNLSGLSARVFQHEFDHLQGILFFDRMTDEVLETIRPQL 240

Query: 241 QALEKKYEERTGLPSPERIENFRTKKKVAAGYG 274
           QALEKKYE+RTGLPSPERIENFR  +KVAAG+G
Sbjct: 241 QALEKKYEDRTGLPSPERIENFR--RKVAAGFG 271

[Close]

BLAST of MS016512 vs. TAIR 10
Match: AT5G14660.1 (peptide deformylase 1B )

HSP 1 Score: 337.0 bits (863), Expect = 1.4e-92
Identity = 174/269 (64.68%), Postives = 210/269 (78.07%), Query Frame = 0


Query: 15  LLPPAYRRLALPAVFRRLSCFS-------STSQFFSHSSKLRPPSTLVYAQAKRGFSAKE 74
           L  P   R+ LP + RR +  S       ST  F S  ++  P ++ V A+ KR  S K+
Sbjct: 8   LQAPPLSRILLPVLSRRATTLSAGYGRLKSTVTFCSTVNRTSPLTSSVRAEVKR-VSRKD 67

Query: 75  DDAASSADLEFEAPLKIVEYPDPILRAKNKRIDSFDDNLKKLVHEMFDVMYKTDGIGLSA 134
           D  AS+ D++FE PLKIVEYPDPILRAKNKRID FD+NLK LV  MFDVMYKTDGIGLSA
Sbjct: 68  DKVASATDVQFETPLKIVEYPDPILRAKNKRIDIFDENLKNLVDAMFDVMYKTDGIGLSA 127

Query: 135 PQVGVNVQLMVFNPVGERGEGEEIVLVNPRVFRYSKKTVLFNEGCLSFPRIYADVERPES 194
           PQVG+NVQLMVFNP GE GEG+EIVLVNP++ +YS K V F+EGCLSFP IYA+V RP+S
Sbjct: 128 PQVGLNVQLMVFNPAGEPGEGKEIVLVNPKIKKYSDKLVPFDEGCLSFPGIYAEVVRPQS 187

Query: 195 VKIDARDISGTRFMVNLSGLPARVFQHEFDHLQGILFFDRMTDEVLDTIRAQLQALEKKY 254
           VKIDARDI+G RF ++LS LPAR+FQHE+DHL+G+LFFDRMTD+VLD+IR +L+ALEKKY
Sbjct: 188 VKIDARDITGERFSISLSRLPARIFQHEYDHLEGVLFFDRMTDQVLDSIREELEALEKKY 247

Query: 255 EERTGLPSPERIENFRTKKKVAAGYGFGK 277
           EE+TGLPSPER+E    ++K  AG GFGK
Sbjct: 248 EEKTGLPSPERVE---ARQKRKAGVGFGK 272

[Close]

BLAST of MS016512 vs. TAIR 10
Match: AT5G14660.2 (peptide deformylase 1B )

HSP 1 Score: 337.0 bits (863), Expect = 1.4e-92
Identity = 174/269 (64.68%), Postives = 210/269 (78.07%), Query Frame = 0


Query: 15  LLPPAYRRLALPAVFRRLSCFS-------STSQFFSHSSKLRPPSTLVYAQAKRGFSAKE 74
           L  P   R+ LP + RR +  S       ST  F S  ++  P ++ V A+ KR  S K+
Sbjct: 8   LQAPPLSRILLPVLSRRATTLSAGYGRLKSTVTFCSTVNRTSPLTSSVRAEVKR-VSRKD 67

Query: 75  DDAASSADLEFEAPLKIVEYPDPILRAKNKRIDSFDDNLKKLVHEMFDVMYKTDGIGLSA 134
           D  AS+ D++FE PLKIVEYPDPILRAKNKRID FD+NLK LV  MFDVMYKTDGIGLSA
Sbjct: 68  DKVASATDVQFETPLKIVEYPDPILRAKNKRIDIFDENLKNLVDAMFDVMYKTDGIGLSA 127

Query: 135 PQVGVNVQLMVFNPVGERGEGEEIVLVNPRVFRYSKKTVLFNEGCLSFPRIYADVERPES 194
           PQVG+NVQLMVFNP GE GEG+EIVLVNP++ +YS K V F+EGCLSFP IYA+V RP+S
Sbjct: 128 PQVGLNVQLMVFNPAGEPGEGKEIVLVNPKIKKYSDKLVPFDEGCLSFPGIYAEVVRPQS 187

Query: 195 VKIDARDISGTRFMVNLSGLPARVFQHEFDHLQGILFFDRMTDEVLDTIRAQLQALEKKY 254
           VKIDARDI+G RF ++LS LPAR+FQHE+DHL+G+LFFDRMTD+VLD+IR +L+ALEKKY
Sbjct: 188 VKIDARDITGERFSISLSRLPARIFQHEYDHLEGVLFFDRMTDQVLDSIREELEALEKKY 247

Query: 255 EERTGLPSPERIENFRTKKKVAAGYGFGK 277
           EE+TGLPSPER+E    ++K  AG GFGK
Sbjct: 248 EEKTGLPSPERVE---ARQKRKAGVGFGK 272

[Close]

BLAST of MS016512 vs. TAIR 10
Match: AT1G15390.1 (peptide deformylase 1A )

HSP 1 Score: 103.2 bits (256), Expect = 3.4e-22
Identity = 60/171 (35.09%), Postives = 87/171 (50.88%), Query Frame = 0


Query: 83  KIVEYPDPILRAKNKRIDSFD---DNLKKLVHEMFDVMYKTDGIGLSAPQVGVNVQLMVF 142
           +IV   DP+L  K + +D  +   + ++K++ +M  VM    G+GL+APQ+GV ++++V 
Sbjct: 82  EIVASGDPVLHEKAREVDPGEIGSERIQKIIDDMIKVMRLAPGVGLAAPQIGVPLRIIVL 141

Query: 143 NP--------------VGERGEGEEIVLVNPRVFRYSKKTVLFNEGCLSFPRIYADVERP 202
                             ER   + +V+VNP +   S K  LF EGCLS     A VER 
Sbjct: 142 EDTKEYISYAPKEEILAQERRHFDLMVMVNPVLKERSNKKALFFEGCLSVDGFRAAVERY 201

Query: 203 ESVKIDARDISGTRFMVNLSGLPARVFQHEFDHLQGILFFDRMTDEVLDTI 237
             V +   D  G R  VN SG  AR+ QHE DHL G L+ D+M      T+
Sbjct: 202 LEVVVTGYDRQGKRIEVNASGWQARILQHECDHLDGNLYVDKMVPRTFRTV 252

The following BLAST results are available for this feature:

BLAST of MS016512 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022152139.1	1.9e-152	99.64	peptide deformylase 1B, chloroplastic [Momordica charantia]	[more]
XP_022989167.1	6.9e-134	89.38	peptide deformylase 1B, chloroplastic [Cucurbita maxima]	[more]
XP_022928203.1	9.0e-134	89.74	peptide deformylase 1B, chloroplastic [Cucurbita moschata]	[more]
XP_023530509.1	5.8e-133	89.38	peptide deformylase 1B, chloroplastic [Cucurbita pepo subsp. pepo]	[more]
XP_038904020.1	8.4e-132	89.38	peptide deformylase 1B, chloroplastic [Benincasa hispida]	[more]

BLAST of MS016512 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FV54	2.7e-93	71.72	Peptide deformylase 1B, chloroplastic OS=Solanum lycopersicum OX=4081 GN=PDF1B P...	[more]
Q9FUZ2	2.0e-91	64.68	Peptide deformylase 1B, chloroplastic/mitochondrial OS=Arabidopsis thaliana OX=3...	[more]
Q5VNN5	2.4e-81	64.63	Peptide deformylase 1B, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 G...	[more]
Q7UHZ5	2.2e-34	41.71	Peptide deformylase OS=Rhodopirellula baltica (strain DSM 10527 / NCIMB 13988 / ...	[more]
B1XJP0	7.9e-32	42.11	Peptide deformylase OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) O...	[more]

BLAST of MS016512 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DF55	9.3e-153	99.64	Peptide deformylase OS=Momordica charantia OX=3673 GN=LOC111019929 PE=3 SV=1	[more]
A0A6J1JF23	3.3e-134	89.38	Peptide deformylase OS=Cucurbita maxima OX=3661 GN=LOC111486320 PE=3 SV=1	[more]
A0A6J1EN89	4.3e-134	89.74	Peptide deformylase OS=Cucurbita moschata OX=3662 GN=LOC111435101 PE=3 SV=1	[more]
A0A0A0LG66	1.1e-126	85.92	Peptide deformylase OS=Cucumis sativus OX=3659 GN=Csa_3G837630 PE=3 SV=1	[more]
A0A1S3B8C2	1.3e-125	86.45	Peptide deformylase OS=Cucumis melo OX=3656 GN=LOC103487104 PE=3 SV=1	[more]

BLAST of MS016512 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G14660.1	1.4e-92	64.68	peptide deformylase 1B	[more]
AT5G14660.2	1.4e-92	64.68	peptide deformylase 1B	[more]
AT1G15390.1	3.4e-22	35.09	peptide deformylase 1A	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 233..253
None	No IPR available	COILS	Coil	Coil	coord: 92..112
None	No IPR available	PANTHER	PTHR10458:SF2	PEPTIDE DEFORMYLASE, MITOCHONDRIAL	coord: 44..249
IPR023635	Peptide deformylase	PRINTS	PR01576	PDEFORMYLASE	coord: 111..140 score: 40.74 coord: 170..181 score: 57.1 coord: 182..200 score: 34.21 coord: 201..230 score: 47.28
IPR023635	Peptide deformylase	TIGRFAM	TIGR00079	TIGR00079	coord: 82..231 e-value: 1.8E-46 score: 155.6
IPR023635	Peptide deformylase	PFAM	PF01327	Pep_deformylase	coord: 82..231 e-value: 2.8E-49 score: 166.8
IPR023635	Peptide deformylase	PANTHER	PTHR10458	PEPTIDE DEFORMYLASE	coord: 44..249
IPR023635	Peptide deformylase	HAMAP	MF_00163	Pep_deformylase	coord: 80..243 score: 27.656319
IPR023635	Peptide deformylase	CDD	cd00487	Pep_deformylase	coord: 84..224 e-value: 2.69549E-65 score: 198.864
IPR036821	Peptide deformylase superfamily	GENE3D	3.90.45.10	Peptide deformylase	coord: 66..258 e-value: 4.6E-67 score: 226.6
IPR036821	Peptide deformylase superfamily	SUPERFAMILY	56420	Peptide deformylase	coord: 80..238

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS016512.1	MS016512.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0042586	peptide deformylase activity