MS016510 (gene) Bitter gourd (TR) v1

Overview


Name	MS016510
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	BRCT domain-containing protein
Location	scaffold657: 308515 .. 308589 (-)
RNA-Seq Expression	MS016510
Synteny	MS016510

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

AAGGGCATTTGGTCTAGTGGTATGATTCTCGCTTTGGGTGCGAGAGGTCCCGAGTTCGATTCTCGGAATGCCCCT

mRNA sequence

AAGGGCATTTGGTCTAGTGGTATGATTCTCGCTTTGGGTGCGAGAGGTCCCGAGTTCGATTCTCGGAATGCCCCT

Coding sequence (CDS)

AAGGGCATTTGGTCTAGTGGTATGATTCTCGCTTTGGGTGCGAGAGGTCCCGAGTTCGATTCTCGGAATGCCCCT

Protein sequence

KGIWSSGMILALGARGPEFDSRNAP

Homology

[Close]

BLAST of MS016510 vs. NCBI nr
Match: KAG6762591.1 (hypothetical protein POTOM_033102 [Populus tomentosa])

HSP 1 Score: 56.2 bits (134), Expect = 4.6e-05
Identity = 25/25 (100.00%), Postives = 25/25 (100.00%), Query Frame = 0


Query: 1  KGIWSSGMILALGARGPEFDSRNAP 26
          KGIWSSGMILALGARGPEFDSRNAP
Sbjct: 13 KGIWSSGMILALGARGPEFDSRNAP 37

[Close]

BLAST of MS016510 vs. NCBI nr
Match: EOX94920.1 (Uncharacterized protein TCM_004519 [Theobroma cacao])

HSP 1 Score: 55.8 bits (133), Expect = 6.0e-05
Identity = 24/25 (96.00%), Postives = 25/25 (100.00%), Query Frame = 0


Query: 1  KGIWSSGMILALGARGPEFDSRNAP 26
          KG+WSSGMILALGARGPEFDSRNAP
Sbjct: 21 KGVWSSGMILALGARGPEFDSRNAP 45

[Close]

BLAST of MS016510 vs. NCBI nr
Match: KAF8046995.1 (hypothetical protein N665_3269s0004, partial [Sinapis alba])

HSP 1 Score: 55.1 bits (131), Expect = 1.0e-04
Identity = 24/25 (96.00%), Postives = 25/25 (100.00%), Query Frame = 0


Query: 1  KGIWSSGMILALGARGPEFDSRNAP 26
          +GIWSSGMILALGARGPEFDSRNAP
Sbjct: 41 RGIWSSGMILALGARGPEFDSRNAP 65

[Close]

BLAST of MS016510 vs. NCBI nr
Match: CAF1699910.1 (unnamed protein product [Brassica napus])

HSP 1 Score: 54.7 bits (130), Expect = 1.3e-04
Identity = 24/25 (96.00%), Postives = 25/25 (100.00%), Query Frame = 0


Query: 1  KGIWSSGMILALGARGPEFDSRNAP 26
          +GIWSSGMILALGARGPEFDSRNAP
Sbjct: 15 QGIWSSGMILALGARGPEFDSRNAP 39

[Close]

BLAST of MS016510 vs. NCBI nr
Match: GEW71266.1 (monodehydroascorbate reductase 4, peroxisomal [Tanacetum cinerariifolium])

HSP 1 Score: 54.7 bits (130), Expect = 1.3e-04
Identity = 24/25 (96.00%), Postives = 25/25 (100.00%), Query Frame = 0


Query: 1   KGIWSSGMILALGARGPEFDSRNAP 26
           +GIWSSGMILALGARGPEFDSRNAP
Sbjct: 473 EGIWSSGMILALGARGPEFDSRNAP 497

[Close]

BLAST of MS016510 vs. ExPASy TrEMBL
Match: A0A061DQC8 (Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_004519 PE=4 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 2.9e-05
Identity = 24/25 (96.00%), Postives = 25/25 (100.00%), Query Frame = 0


Query: 1  KGIWSSGMILALGARGPEFDSRNAP 26
          KG+WSSGMILALGARGPEFDSRNAP
Sbjct: 21 KGVWSSGMILALGARGPEFDSRNAP 45

[Close]

BLAST of MS016510 vs. ExPASy TrEMBL
Match: A0A3P6B491 (Uncharacterized protein OS=Brassica oleracea OX=3712 GN=BOLC3T19803H PE=4 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 1.1e-04
Identity = 24/24 (100.00%), Postives = 24/24 (100.00%), Query Frame = 0


Query: 2  GIWSSGMILALGARGPEFDSRNAP 26
          GIWSSGMILALGARGPEFDSRNAP
Sbjct: 11 GIWSSGMILALGARGPEFDSRNAP 34

[Close]

BLAST of MS016510 vs. ExPASy TrEMBL
Match: A0A3P6BFV3 (Uncharacterized protein OS=Brassica oleracea OX=3712 GN=BOLC3T19802H PE=4 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 1.1e-04
Identity = 24/24 (100.00%), Postives = 24/24 (100.00%), Query Frame = 0


Query: 2  GIWSSGMILALGARGPEFDSRNAP 26
          GIWSSGMILALGARGPEFDSRNAP
Sbjct: 16 GIWSSGMILALGARGPEFDSRNAP 39

[Close]

BLAST of MS016510 vs. ExPASy TrEMBL
Match: A0A2K1Z527 (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_009G087300 PE=4 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 1.1e-04
Identity = 24/24 (100.00%), Postives = 24/24 (100.00%), Query Frame = 0


Query: 2  GIWSSGMILALGARGPEFDSRNAP 26
          GIWSSGMILALGARGPEFDSRNAP
Sbjct: 2  GIWSSGMILALGARGPEFDSRNAP 25

[Close]

BLAST of MS016510 vs. ExPASy TrEMBL
Match: A0A078I2F6 (BnaC03g58850D protein OS=Brassica napus OX=3708 GN=BnaC03g58850D PE=4 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 1.1e-04
Identity = 24/24 (100.00%), Postives = 24/24 (100.00%), Query Frame = 0


Query: 2  GIWSSGMILALGARGPEFDSRNAP 26
          GIWSSGMILALGARGPEFDSRNAP
Sbjct: 11 GIWSSGMILALGARGPEFDSRNAP 34

The following BLAST results are available for this feature:

BLAST of MS016510 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6762591.1	4.6e-05	100.00	hypothetical protein POTOM_033102 [Populus tomentosa]	[more]
EOX94920.1	6.0e-05	96.00	Uncharacterized protein TCM_004519 [Theobroma cacao]	[more]
KAF8046995.1	1.0e-04	96.00	hypothetical protein N665_3269s0004, partial [Sinapis alba]	[more]
CAF1699910.1	1.3e-04	96.00	unnamed protein product [Brassica napus]	[more]
GEW71266.1	1.3e-04	96.00	monodehydroascorbate reductase 4, peroxisomal [Tanacetum cinerariifolium]	[more]

BLAST of MS016510 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MS016510 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A061DQC8	2.9e-05	96.00	Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_004519 PE=4 SV=1	[more]
A0A3P6B491	1.1e-04	100.00	Uncharacterized protein OS=Brassica oleracea OX=3712 GN=BOLC3T19803H PE=4 SV=1	[more]
A0A3P6BFV3	1.1e-04	100.00	Uncharacterized protein OS=Brassica oleracea OX=3712 GN=BOLC3T19802H PE=4 SV=1	[more]
A0A2K1Z527	1.1e-04	100.00	Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_009G087300 PE=4 ...	[more]
A0A078I2F6	1.1e-04	100.00	BnaC03g58850D protein OS=Brassica napus OX=3708 GN=BnaC03g58850D PE=4 SV=1	[more]

BLAST of MS016510 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS016510.1	MS016510.1	mRNA