MS016209 (gene) Bitter gourd (TR) v1

Overview


Name	MS016209
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Germin-like protein
Location	scaffold9_2: 1079093 .. 1079230 (-)
RNA-Seq Expression	MS016209
Synteny	MS016209

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

CTAAAAGCGGGCGATGTGATGGTATTTCCAAAGGAGTTATTACACTTCTGTTTGAATTCTGGATATGAGCCTGCCATCATTTTCTCTGTGTTTAACAGTCAAAATCCAGGAGTCGTCAACATTAATGGCGCCATGTTT

mRNA sequence

CTAAAAGCGGGCGATGTGATGGTATTTCCAAAGGAGTTATTACACTTCTGTTTGAATTCTGGATATGAGCCTGCCATCATTTTCTCTGTGTTTAACAGTCAAAATCCAGGAGTCGTCAACATTAATGGCGCCATGTTT

Coding sequence (CDS)

CTAAAAGCGGGCGATGTGATGGTATTTCCAAAGGAGTTATTACACTTCTGTTTGAATTCTGGATATGAGCCTGCCATCATTTTCTCTGTGTTTAACAGTCAAAATCCAGGAGTCGTCAACATTAATGGCGCCATGTTT

Protein sequence

LKAGDVMVFPKELLHFCLNSGYEPAIIFSVFNSQNPGVVNINGAMF

Homology

[Close]

BLAST of MS016209 vs. NCBI nr
Match: XP_022153439.1 (germin-like protein subfamily 3 member 4 [Momordica charantia])

HSP 1 Score: 96.3 bits (238), Expect = 7.4e-17
Identity = 45/46 (97.83%), Postives = 45/46 (97.83%), Query Frame = 0


Query: 1   LKAGDVMVFPKELLHFCLNSGYEPAIIFSVFNSQNPGVVNINGAMF 47
           LKAGDVMVFPK LLHFCLNSGYEPAIIFSVFNSQNPGVVNINGAMF
Sbjct: 144 LKAGDVMVFPKGLLHFCLNSGYEPAIIFSVFNSQNPGVVNINGAMF 189

[Close]

BLAST of MS016209 vs. NCBI nr
Match: XP_038905670.1 (germin-like protein subfamily 3 member 4 [Benincasa hispida])

HSP 1 Score: 91.3 bits (225), Expect = 2.4e-15
Identity = 42/46 (91.30%), Postives = 44/46 (95.65%), Query Frame = 0


Query: 1   LKAGDVMVFPKELLHFCLNSGYEPAIIFSVFNSQNPGVVNINGAMF 47
           LKAGDV+VFPK LLHFCLNSGYEPAI FSV+NSQNPGVVNINGAMF
Sbjct: 159 LKAGDVIVFPKGLLHFCLNSGYEPAISFSVYNSQNPGVVNINGAMF 204

[Close]

BLAST of MS016209 vs. NCBI nr
Match: XP_008465454.1 (PREDICTED: germin-like protein subfamily 3 member 4 [Cucumis melo] >KAA0034959.1 germin-like protein subfamily 3 member 4 [Cucumis melo var. makuwa] >TYK21314.1 germin-like protein subfamily 3 member 4 [Cucumis melo var. makuwa])

HSP 1 Score: 89.7 bits (221), Expect = 6.9e-15
Identity = 41/46 (89.13%), Postives = 44/46 (95.65%), Query Frame = 0


Query: 1   LKAGDVMVFPKELLHFCLNSGYEPAIIFSVFNSQNPGVVNINGAMF 47
           LKAGDV+VFPK LLHFCLNSGYEPAI FSV+NSQNPGVVNINGA+F
Sbjct: 145 LKAGDVIVFPKGLLHFCLNSGYEPAISFSVYNSQNPGVVNINGAVF 190

[Close]

BLAST of MS016209 vs. NCBI nr
Match: XP_022998490.1 (germin-like protein subfamily 3 member 4 [Cucurbita maxima])

HSP 1 Score: 86.3 bits (212), Expect = 7.7e-14
Identity = 39/46 (84.78%), Postives = 42/46 (91.30%), Query Frame = 0


Query: 1   LKAGDVMVFPKELLHFCLNSGYEPAIIFSVFNSQNPGVVNINGAMF 47
           LK GDV+VFPK LLHFCLNSGYE A IFSV+NSQNPGVVN+NGAMF
Sbjct: 142 LKPGDVIVFPKGLLHFCLNSGYETATIFSVYNSQNPGVVNVNGAMF 187

[Close]

BLAST of MS016209 vs. NCBI nr
Match: XP_023522282.1 (germin-like protein subfamily 3 member 4 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 86.3 bits (212), Expect = 7.7e-14
Identity = 39/46 (84.78%), Postives = 42/46 (91.30%), Query Frame = 0


Query: 1   LKAGDVMVFPKELLHFCLNSGYEPAIIFSVFNSQNPGVVNINGAMF 47
           LK GDV+VFPK LLHFCLNSGYE A IFSV+NSQNPGVVN+NGAMF
Sbjct: 156 LKPGDVIVFPKGLLHFCLNSGYETATIFSVYNSQNPGVVNVNGAMF 201

[Close]

BLAST of MS016209 vs. ExPASy Swiss-Prot
Match: Q9FLT3 (Germin-like protein subfamily 3 member 4 OS=Arabidopsis thaliana OX=3702 GN=At5g61750 PE=2 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 1.7e-11
Identity = 30/41 (73.17%), Postives = 34/41 (82.93%), Query Frame = 0


Query: 1   LKAGDVMVFPKELLHFCLNSGYEPAIIFSVFNSQNPGVVNI 42
           L+ GDV VFPK LLHFCL+ G+EPA  FS +NSQNPGVVNI
Sbjct: 138 LQKGDVFVFPKGLLHFCLSGGFEPATAFSFYNSQNPGVVNI 178

[Close]

BLAST of MS016209 vs. ExPASy Swiss-Prot
Match: Q2R352 (Germin-like protein 11-1 OS=Oryza sativa subsp. japonica OX=39947 GN=Os11g0537350 PE=2 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 2.2e-08
Identity = 27/46 (58.70%), Postives = 32/46 (69.57%), Query Frame = 0


Query: 1   LKAGDVMVFPKELLHFCLNSGYEPAIIFSVFNSQNPGVVNINGAMF 47
           L  GDV +FP+ L+HF +N G+  A  FSV NSQNPGVV I  AMF
Sbjct: 143 LAEGDVFIFPRGLVHFIMNYGFGLATTFSVLNSQNPGVVGITHAMF 188

[Close]

BLAST of MS016209 vs. ExPASy Swiss-Prot
Match: Q6ESF0 (Germin-like protein 2-4 OS=Oryza sativa subsp. japonica OX=39947 GN=Os02g0532500 PE=2 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 8.5e-08
Identity = 23/46 (50.00%), Postives = 33/46 (71.74%), Query Frame = 0


Query: 1   LKAGDVMVFPKELLHFCLNSGYEPAIIFSVFNSQNPGVVNINGAMF 47
           L+ G+VMVFP+ ++HF LN G  PA ++  FNS+NPG+V I   +F
Sbjct: 147 LEQGEVMVFPRAMVHFQLNVGDTPATVYGAFNSENPGIVRIPATVF 192

[Close]

BLAST of MS016209 vs. ExPASy Swiss-Prot
Match: Q9FMA6 (Putative germin-like protein subfamily 1 member 12 OS=Arabidopsis thaliana OX=3702 GN=At5g38960 PE=3 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 4.2e-07
Identity = 23/46 (50.00%), Postives = 32/46 (69.57%), Query Frame = 0


Query: 1   LKAGDVMVFPKELLHFCLNSGYEPAIIFSVFNSQNPGVVNINGAMF 47
           L  GDV VFP+ L+HF +N G +PA+ F+  +SQNPGV+ I   +F
Sbjct: 148 LNKGDVFVFPEGLIHFQVNIGKQPAVAFASLSSQNPGVIIIGNTLF 193

[Close]

BLAST of MS016209 vs. ExPASy Swiss-Prot
Match: Q7XSN6 (Germin-like protein 4-1 OS=Oryza sativa subsp. japonica OX=39947 GN=Os04g0617900 PE=2 SV=2)

HSP 1 Score: 54.3 bits (129), Expect = 4.2e-07
Identity = 24/46 (52.17%), Postives = 32/46 (69.57%), Query Frame = 0


Query: 1   LKAGDVMVFPKELLHFCLNSGYEPAIIFSVFNSQNPGVVNINGAMF 47
           L  GDV VFP+ L+HF LN+G  PA+  +  +SQNPGV+ I  A+F
Sbjct: 152 LGPGDVFVFPQGLIHFQLNNGAVPAVAIAALSSQNPGVITIANAVF 197

[Close]

BLAST of MS016209 vs. ExPASy TrEMBL
Match: A0A6J1DJ19 (Germin-like protein OS=Momordica charantia OX=3673 GN=LOC111020943 PE=3 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 3.6e-17
Identity = 45/46 (97.83%), Postives = 45/46 (97.83%), Query Frame = 0


Query: 1   LKAGDVMVFPKELLHFCLNSGYEPAIIFSVFNSQNPGVVNINGAMF 47
           LKAGDVMVFPK LLHFCLNSGYEPAIIFSVFNSQNPGVVNINGAMF
Sbjct: 144 LKAGDVMVFPKGLLHFCLNSGYEPAIIFSVFNSQNPGVVNINGAMF 189

[Close]

BLAST of MS016209 vs. ExPASy TrEMBL
Match: A0A5D3DCK1 (Germin-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1199G00230 PE=3 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 3.4e-15
Identity = 41/46 (89.13%), Postives = 44/46 (95.65%), Query Frame = 0


Query: 1   LKAGDVMVFPKELLHFCLNSGYEPAIIFSVFNSQNPGVVNINGAMF 47
           LKAGDV+VFPK LLHFCLNSGYEPAI FSV+NSQNPGVVNINGA+F
Sbjct: 145 LKAGDVIVFPKGLLHFCLNSGYEPAISFSVYNSQNPGVVNINGAVF 190

[Close]

BLAST of MS016209 vs. ExPASy TrEMBL
Match: A0A1S3CNX7 (Germin-like protein OS=Cucumis melo OX=3656 GN=LOC103503059 PE=3 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 3.4e-15
Identity = 41/46 (89.13%), Postives = 44/46 (95.65%), Query Frame = 0


Query: 1   LKAGDVMVFPKELLHFCLNSGYEPAIIFSVFNSQNPGVVNINGAMF 47
           LKAGDV+VFPK LLHFCLNSGYEPAI FSV+NSQNPGVVNINGA+F
Sbjct: 145 LKAGDVIVFPKGLLHFCLNSGYEPAISFSVYNSQNPGVVNINGAVF 190

[Close]

BLAST of MS016209 vs. ExPASy TrEMBL
Match: A0A6J1GAI2 (Germin-like protein OS=Cucurbita moschata OX=3662 GN=LOC111452269 PE=3 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 3.7e-14
Identity = 39/46 (84.78%), Postives = 42/46 (91.30%), Query Frame = 0


Query: 1   LKAGDVMVFPKELLHFCLNSGYEPAIIFSVFNSQNPGVVNINGAMF 47
           LK GDV+VFPK LLHFCLNSGYE A IFSV+NSQNPGVVN+NGAMF
Sbjct: 142 LKPGDVIVFPKGLLHFCLNSGYETATIFSVYNSQNPGVVNVNGAMF 187

[Close]

BLAST of MS016209 vs. ExPASy TrEMBL
Match: A0A6J1KCN7 (Germin-like protein OS=Cucurbita maxima OX=3661 GN=LOC111493105 PE=3 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 3.7e-14
Identity = 39/46 (84.78%), Postives = 42/46 (91.30%), Query Frame = 0


Query: 1   LKAGDVMVFPKELLHFCLNSGYEPAIIFSVFNSQNPGVVNINGAMF 47
           LK GDV+VFPK LLHFCLNSGYE A IFSV+NSQNPGVVN+NGAMF
Sbjct: 142 LKPGDVIVFPKGLLHFCLNSGYETATIFSVYNSQNPGVVNVNGAMF 187

[Close]

BLAST of MS016209 vs. TAIR 10
Match: AT5G61750.1 (RmlC-like cupins superfamily protein )

HSP 1 Score: 68.9 bits (167), Expect = 1.2e-12
Identity = 30/41 (73.17%), Postives = 34/41 (82.93%), Query Frame = 0


Query: 1   LKAGDVMVFPKELLHFCLNSGYEPAIIFSVFNSQNPGVVNI 42
           L+ GDV VFPK LLHFCL+ G+EPA  FS +NSQNPGVVNI
Sbjct: 138 LQKGDVFVFPKGLLHFCLSGGFEPATAFSFYNSQNPGVVNI 178

[Close]

BLAST of MS016209 vs. TAIR 10
Match: AT5G38960.1 (RmlC-like cupins superfamily protein )

HSP 1 Score: 54.3 bits (129), Expect = 3.0e-08
Identity = 23/46 (50.00%), Postives = 32/46 (69.57%), Query Frame = 0


Query: 1   LKAGDVMVFPKELLHFCLNSGYEPAIIFSVFNSQNPGVVNINGAMF 47
           L  GDV VFP+ L+HF +N G +PA+ F+  +SQNPGV+ I   +F
Sbjct: 146 LNKGDVFVFPEGLIHFQVNIGKQPAVAFASLSSQNPGVIIIGNTLF 191

[Close]

BLAST of MS016209 vs. TAIR 10
Match: AT5G38910.1 (RmlC-like cupins superfamily protein )

HSP 1 Score: 51.2 bits (121), Expect = 2.5e-07
Identity = 23/46 (50.00%), Postives = 31/46 (67.39%), Query Frame = 0


Query: 1   LKAGDVMVFPKELLHFCLNSGYEPAIIFSVFNSQNPGVVNINGAMF 47
           L  GDV VFP+ L+HF +N G  PA+ F+  +SQNPGV+ I   +F
Sbjct: 145 LYEGDVFVFPQGLIHFQVNVGKYPAVAFAGLSSQNPGVITIADTVF 190

[Close]

BLAST of MS016209 vs. TAIR 10
Match: AT1G02335.1 (germin-like protein subfamily 2 member 2 precursor )

HSP 1 Score: 50.8 bits (120), Expect = 3.3e-07
Identity = 21/46 (45.65%), Postives = 30/46 (65.22%), Query Frame = 0


Query: 1   LKAGDVMVFPKELLHFCLNSGYEPAIIFSVFNSQNPGVVNINGAMF 47
           +K G+V VFP+ L+HF  N+G  PA + S FNSQ PG  ++   +F
Sbjct: 141 IKIGEVFVFPRGLVHFQKNNGKSPASVLSAFNSQLPGTASVAATLF 186

[Close]

BLAST of MS016209 vs. TAIR 10
Match: AT1G09560.1 (germin-like protein 5 )

HSP 1 Score: 50.1 bits (118), Expect = 5.7e-07
Identity = 22/46 (47.83%), Postives = 29/46 (63.04%), Query Frame = 0


Query: 1   LKAGDVMVFPKELLHFCLNSGYEPAIIFSVFNSQNPGVVNINGAMF 47
           LK GDV  FPK L+HF  N+G  PA + + FNSQ PG  ++   +F
Sbjct: 141 LKKGDVFAFPKGLVHFQKNNGDVPASVIAAFNSQLPGTQSLGATLF 186

The following BLAST results are available for this feature:

BLAST of MS016209 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022153439.1	7.4e-17	97.83	germin-like protein subfamily 3 member 4 [Momordica charantia]	[more]
XP_038905670.1	2.4e-15	91.30	germin-like protein subfamily 3 member 4 [Benincasa hispida]	[more]
XP_008465454.1	6.9e-15	89.13	PREDICTED: germin-like protein subfamily 3 member 4 [Cucumis melo] >KAA0034959.1...	[more]
XP_022998490.1	7.7e-14	84.78	germin-like protein subfamily 3 member 4 [Cucurbita maxima]	[more]
XP_023522282.1	7.7e-14	84.78	germin-like protein subfamily 3 member 4 [Cucurbita pepo subsp. pepo]	[more]

BLAST of MS016209 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FLT3	1.7e-11	73.17	Germin-like protein subfamily 3 member 4 OS=Arabidopsis thaliana OX=3702 GN=At5g...	[more]
Q2R352	2.2e-08	58.70	Germin-like protein 11-1 OS=Oryza sativa subsp. japonica OX=39947 GN=Os11g053735...	[more]
Q6ESF0	8.5e-08	50.00	Germin-like protein 2-4 OS=Oryza sativa subsp. japonica OX=39947 GN=Os02g0532500...	[more]
Q9FMA6	4.2e-07	50.00	Putative germin-like protein subfamily 1 member 12 OS=Arabidopsis thaliana OX=37...	[more]
Q7XSN6	4.2e-07	52.17	Germin-like protein 4-1 OS=Oryza sativa subsp. japonica OX=39947 GN=Os04g0617900...	[more]

BLAST of MS016209 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DJ19	3.6e-17	97.83	Germin-like protein OS=Momordica charantia OX=3673 GN=LOC111020943 PE=3 SV=1	[more]
A0A5D3DCK1	3.4e-15	89.13	Germin-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1199...	[more]
A0A1S3CNX7	3.4e-15	89.13	Germin-like protein OS=Cucumis melo OX=3656 GN=LOC103503059 PE=3 SV=1	[more]
A0A6J1GAI2	3.7e-14	84.78	Germin-like protein OS=Cucurbita moschata OX=3662 GN=LOC111452269 PE=3 SV=1	[more]
A0A6J1KCN7	3.7e-14	84.78	Germin-like protein OS=Cucurbita maxima OX=3661 GN=LOC111493105 PE=3 SV=1	[more]

BLAST of MS016209 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G61750.1	1.2e-12	73.17	RmlC-like cupins superfamily protein	[more]
AT5G38960.1	3.0e-08	50.00	RmlC-like cupins superfamily protein	[more]
AT5G38910.1	2.5e-07	50.00	RmlC-like cupins superfamily protein	[more]
AT1G02335.1	3.3e-07	45.65	germin-like protein subfamily 2 member 2 precursor	[more]
AT1G09560.1	5.7e-07	47.83	germin-like protein 5	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006045	Cupin 1	PFAM	PF00190	Cupin_1	coord: 1..42 e-value: 3.2E-11 score: 43.0
IPR014710	RmlC-like jelly roll fold	GENE3D	2.60.120.10	Jelly Rolls	coord: 1..46 e-value: 1.1E-15 score: 59.6
None	No IPR available	PANTHER	PTHR31238	GERMIN-LIKE PROTEIN SUBFAMILY 3 MEMBER 3	coord: 1..46
None	No IPR available	PANTHER	PTHR31238:SF3	GERMIN-LIKE PROTEIN SUBFAMILY 3 MEMBER 4	coord: 1..46
IPR011051	RmlC-like cupin domain superfamily	SUPERFAMILY	51182	RmlC-like cupins	coord: 1..42

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS016209.1	MS016209.1	mRNA