MS015829 (gene) Bitter gourd (TR) v1

Overview
NameMS015829
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionHTH myb-type domain-containing protein
Locationscaffold943_2: 223719 .. 225232 (+)
RNA-Seq ExpressionMS015829
SyntenyMS015829
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATCAAGAAGTGCATTTCTGCCAGAAGTTCACAAATATGAAATCTCACTGGGTGAGAAATTTTTCATTATCAGAAAATTGCTTTTACCTTTAAAATGTTATTCATTAAATACCTTGAATGCATATCTTATATTGCTTGCCTCATCCTTCCAACATTGATACACGTAAATGCTTCCCCATGATTTGAGTCTACATCGTTTGAGTTTTTTTGAATGATAGAGGACAAATATAATGTATGGTGCCATTGTATCTGTACGTTAATATTGTGTAAACATCAAAACTTTGATAACACGATAGTATCGGCACCTTTGTAGGTCCTCAACAAAATTTTCCCCAATATCAATTCTATTAATTTTTCATTTAATATGCCATAGAATATTTAGCAAGGAGTTGGGTTAGTGGGAGGTGGTCATAAATAGAGAAAGTTAGACGTTTGGGATTTCTGGAAATAGTTTGTAGGAGAGTGATTGAAGTGCTTGAAAAACTTGTAATTTTTCTTCTTAATATCAATACTATTCTGTATTGATTTTCATTTATATTTCAAGTCGGTGGATCATCTCTTTATTCATTGTCCGTTCGCATTTACTGCTTGGTCTCATATTGCATCCCTGTTGTGTGTGTCCTTTTGTCCTCATAGAAAGATAGGTGATTTTTGTCCTCCTAAAAAGATAGGTGATTTTATCTCAAAAGGATTTGGGGGAGTAGCCCTTAAGGGTGAAGTGTTCACTCTCTGGAATTGTGCAGGGAGAGCCTTGATTTGGTTCCTTTGGAAAGAAAGAAACAATAGACCTTTCGAAGATAAGAAGTCCTTGGTGGATATTTTTTTTGTGTGAATATACAACATACGACTTCTTGATGAGCTACAATCCATAAGAAGGTTTTTTGTAACAATAGTCTTCAAATGATTATACGTGATTGGAAAGCTGTGATTGTTTAGTTCTTTGGGGAGGGTTCCTTCGACCCTCTGCCTTTAGGCTGTTTCTTTGTTTTTGTGGTTGAATATATGATGTTTGTTTCTTATTAAAAAAAAAAAAAAAAAGAGAGGGAGAGTCTGGGCTCTCAGAGTGTTTGGAAAACTATTTTCCTTCTTTTTTTGCGTACTATTTTCTGTTAGCTTTCTTTTCAATTTTTGATTCCTATCAGAGTAGTGGTTCTTTTAGCCCACATCTCCTCTCTAAATTGCTCTTTACCTTTCATTTTTTAATATTGGGGTGATTTTCTATCAATTCCAAATTGGCAGTTTGTATAGGTGATGCTTCTCTGCATGATCATAATTGAAACCTGATTCTTCTTCCTGGATATTATCTTTCTGACTTGTGCCAATTTTCTATTTTTTCTTCATAGGTAAAGGTGGATGGATCTTTTCTTCCTGCACCATTAAATGAACCAAATGAGGTTGAGCATTTACTTGTGGAGCCCAAAAGCAACCATGTTTTAGGAGATTGCTTGAGAGCTCAAGATTTCTCCTGTGACTTTGACTATGGGATACAAACAAATCGTGGTGATTTCTTA

mRNA sequence

ATGGATCAAGAAGTGCATTTCTGCCAGAAGTTCACAAATATGAAATCTCACTGGGTAAAGGTGGATGGATCTTTTCTTCCTGCACCATTAAATGAACCAAATGAGGTTGAGCATTTACTTGTGGAGCCCAAAAGCAACCATGTTTTAGGAGATTGCTTGAGAGCTCAAGATTTCTCCTGTGACTTTGACTATGGGATACAAACAAATCGTGGTGATTTCTTA

Coding sequence (CDS)

ATGGATCAAGAAGTGCATTTCTGCCAGAAGTTCACAAATATGAAATCTCACTGGGTAAAGGTGGATGGATCTTTTCTTCCTGCACCATTAAATGAACCAAATGAGGTTGAGCATTTACTTGTGGAGCCCAAAAGCAACCATGTTTTAGGAGATTGCTTGAGAGCTCAAGATTTCTCCTGTGACTTTGACTATGGGATACAAACAAATCGTGGTGATTTCTTA

Protein sequence

MDQEVHFCQKFTNMKSHWVKVDGSFLPAPLNEPNEVEHLLVEPKSNHVLGDCLRAQDFSCDFDYGIQTNRGDFL
Homology
[Close]
BLAST of MS015829 vs. NCBI nr
Match: XP_022143737.1 (uncharacterized protein LOC111013581 isoform X1 [Momordica charantia])

HSP 1 Score: 160.2 bits (404), Expect = 6.7e-36
Identity = 71/71 (100.00%), Postives = 71/71 (100.00%), Query Frame = 0 

Query: 1  MDQEVHFCQKFTNMKSHWVKVDGSFLPAPLNEPNEVEHLLVEPKSNHVLGDCLRAQDFSC 60
          MDQEVHFCQKFTNMKSHWVKVDGSFLPAPLNEPNEVEHLLVEPKSNHVLGDCLRAQDFSC
Sbjct: 1  MDQEVHFCQKFTNMKSHWVKVDGSFLPAPLNEPNEVEHLLVEPKSNHVLGDCLRAQDFSC 60

Query: 61 DFDYGIQTNRG 72
          DFDYGIQTNRG
Sbjct: 61 DFDYGIQTNRG 71

[Close]
BLAST of MS015829 vs. NCBI nr
Match: XP_022143738.1 (uncharacterized protein LOC111013581 isoform X2 [Momordica charantia])

HSP 1 Score: 160.2 bits (404), Expect = 6.7e-36
Identity = 71/71 (100.00%), Postives = 71/71 (100.00%), Query Frame = 0 

Query: 1  MDQEVHFCQKFTNMKSHWVKVDGSFLPAPLNEPNEVEHLLVEPKSNHVLGDCLRAQDFSC 60
          MDQEVHFCQKFTNMKSHWVKVDGSFLPAPLNEPNEVEHLLVEPKSNHVLGDCLRAQDFSC
Sbjct: 1  MDQEVHFCQKFTNMKSHWVKVDGSFLPAPLNEPNEVEHLLVEPKSNHVLGDCLRAQDFSC 60

Query: 61 DFDYGIQTNRG 72
          DFDYGIQTNRG
Sbjct: 61 DFDYGIQTNRG 71

[Close]
BLAST of MS015829 vs. NCBI nr
Match: XP_038881569.1 (uncharacterized protein LOC120073047 isoform X3 [Benincasa hispida])

HSP 1 Score: 135.6 bits (340), Expect = 1.8e-28
Identity = 59/69 (85.51%), Postives = 64/69 (92.75%), Query Frame = 0 

Query: 1  MDQEVHFCQKFTNMKSHWVKVDGSFLPAPLNEPNEVEHLLVEPKSNHVLGDCLRAQDFSC 60
          MDQEVHFCQKFTNMKSHWV+V+G FLPAPLN+ NEVE LLVEPKS+HVLG+CLR QDFSC
Sbjct: 1  MDQEVHFCQKFTNMKSHWVRVEGPFLPAPLNDSNEVEDLLVEPKSDHVLGNCLRVQDFSC 60

Query: 61 DFDYGIQTN 70
          DF YGIQTN
Sbjct: 61 DFGYGIQTN 69

[Close]
BLAST of MS015829 vs. NCBI nr
Match: XP_038881566.1 (uncharacterized protein LOC120073047 isoform X1 [Benincasa hispida])

HSP 1 Score: 135.6 bits (340), Expect = 1.8e-28
Identity = 59/69 (85.51%), Postives = 64/69 (92.75%), Query Frame = 0 

Query: 1  MDQEVHFCQKFTNMKSHWVKVDGSFLPAPLNEPNEVEHLLVEPKSNHVLGDCLRAQDFSC 60
          MDQEVHFCQKFTNMKSHWV+V+G FLPAPLN+ NEVE LLVEPKS+HVLG+CLR QDFSC
Sbjct: 1  MDQEVHFCQKFTNMKSHWVRVEGPFLPAPLNDSNEVEDLLVEPKSDHVLGNCLRVQDFSC 60

Query: 61 DFDYGIQTN 70
          DF YGIQTN
Sbjct: 61 DFGYGIQTN 69

[Close]
BLAST of MS015829 vs. NCBI nr
Match: XP_038881570.1 (uncharacterized protein LOC120073047 isoform X4 [Benincasa hispida])

HSP 1 Score: 135.6 bits (340), Expect = 1.8e-28
Identity = 59/69 (85.51%), Postives = 64/69 (92.75%), Query Frame = 0 

Query: 1  MDQEVHFCQKFTNMKSHWVKVDGSFLPAPLNEPNEVEHLLVEPKSNHVLGDCLRAQDFSC 60
          MDQEVHFCQKFTNMKSHWV+V+G FLPAPLN+ NEVE LLVEPKS+HVLG+CLR QDFSC
Sbjct: 1  MDQEVHFCQKFTNMKSHWVRVEGPFLPAPLNDSNEVEDLLVEPKSDHVLGNCLRVQDFSC 60

Query: 61 DFDYGIQTN 70
          DF YGIQTN
Sbjct: 61 DFGYGIQTN 69

[Close]
BLAST of MS015829 vs. ExPASy TrEMBL
Match: A0A6J1CRQ1 (uncharacterized protein LOC111013581 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111013581 PE=4 SV=1)

HSP 1 Score: 160.2 bits (404), Expect = 3.3e-36
Identity = 71/71 (100.00%), Postives = 71/71 (100.00%), Query Frame = 0 

Query: 1  MDQEVHFCQKFTNMKSHWVKVDGSFLPAPLNEPNEVEHLLVEPKSNHVLGDCLRAQDFSC 60
          MDQEVHFCQKFTNMKSHWVKVDGSFLPAPLNEPNEVEHLLVEPKSNHVLGDCLRAQDFSC
Sbjct: 1  MDQEVHFCQKFTNMKSHWVKVDGSFLPAPLNEPNEVEHLLVEPKSNHVLGDCLRAQDFSC 60

Query: 61 DFDYGIQTNRG 72
          DFDYGIQTNRG
Sbjct: 61 DFDYGIQTNRG 71

[Close]
BLAST of MS015829 vs. ExPASy TrEMBL
Match: A0A6J1CRG2 (uncharacterized protein LOC111013581 isoform X2 OS=Momordica charantia OX=3673 GN=LOC111013581 PE=4 SV=1)

HSP 1 Score: 160.2 bits (404), Expect = 3.3e-36
Identity = 71/71 (100.00%), Postives = 71/71 (100.00%), Query Frame = 0 

Query: 1  MDQEVHFCQKFTNMKSHWVKVDGSFLPAPLNEPNEVEHLLVEPKSNHVLGDCLRAQDFSC 60
          MDQEVHFCQKFTNMKSHWVKVDGSFLPAPLNEPNEVEHLLVEPKSNHVLGDCLRAQDFSC
Sbjct: 1  MDQEVHFCQKFTNMKSHWVKVDGSFLPAPLNEPNEVEHLLVEPKSNHVLGDCLRAQDFSC 60

Query: 61 DFDYGIQTNRG 72
          DFDYGIQTNRG
Sbjct: 61 DFDYGIQTNRG 71

[Close]
BLAST of MS015829 vs. ExPASy TrEMBL
Match: A0A1S3BLJ8 (uncharacterized protein LOC103491166 isoform X3 OS=Cucumis melo OX=3656 GN=LOC103491166 PE=4 SV=1)

HSP 1 Score: 134.8 bits (338), Expect = 1.5e-28
Identity = 60/71 (84.51%), Postives = 63/71 (88.73%), Query Frame = 0 

Query: 1  MDQEVHFCQKFTNMKSHWVKVDGSFLPAPLNEPNEVEHLLVEPKSNHVLGDCLRAQDFSC 60
          MDQEVHFCQKFTNMKSHWVKV+G FLPAPLN+ NEVE LLVE KS HVLG+CLR QDFSC
Sbjct: 1  MDQEVHFCQKFTNMKSHWVKVEGPFLPAPLNDSNEVEDLLVESKSEHVLGNCLRVQDFSC 60

Query: 61 DFDYGIQTNRG 72
          DF YGIQTN G
Sbjct: 61 DFGYGIQTNGG 71

[Close]
BLAST of MS015829 vs. ExPASy TrEMBL
Match: A0A1S3BKX9 (uncharacterized protein LOC103491166 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103491166 PE=4 SV=1)

HSP 1 Score: 134.8 bits (338), Expect = 1.5e-28
Identity = 60/71 (84.51%), Postives = 63/71 (88.73%), Query Frame = 0 

Query: 1  MDQEVHFCQKFTNMKSHWVKVDGSFLPAPLNEPNEVEHLLVEPKSNHVLGDCLRAQDFSC 60
          MDQEVHFCQKFTNMKSHWVKV+G FLPAPLN+ NEVE LLVE KS HVLG+CLR QDFSC
Sbjct: 1  MDQEVHFCQKFTNMKSHWVKVEGPFLPAPLNDSNEVEDLLVESKSEHVLGNCLRVQDFSC 60

Query: 61 DFDYGIQTNRG 72
          DF YGIQTN G
Sbjct: 61 DFGYGIQTNGG 71

[Close]
BLAST of MS015829 vs. ExPASy TrEMBL
Match: A0A1S3BLK0 (uncharacterized protein LOC103491166 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103491166 PE=4 SV=1)

HSP 1 Score: 134.8 bits (338), Expect = 1.5e-28
Identity = 60/71 (84.51%), Postives = 63/71 (88.73%), Query Frame = 0 

Query: 1  MDQEVHFCQKFTNMKSHWVKVDGSFLPAPLNEPNEVEHLLVEPKSNHVLGDCLRAQDFSC 60
          MDQEVHFCQKFTNMKSHWVKV+G FLPAPLN+ NEVE LLVE KS HVLG+CLR QDFSC
Sbjct: 1  MDQEVHFCQKFTNMKSHWVKVEGPFLPAPLNDSNEVEDLLVESKSEHVLGNCLRVQDFSC 60

Query: 61 DFDYGIQTNRG 72
          DF YGIQTN G
Sbjct: 61 DFGYGIQTNGG 71

The following BLAST results are available for this feature:
BLAST of MS015829 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022143737.16.7e-36100.00uncharacterized protein LOC111013581 isoform X1 [Momordica charantia][more]
XP_022143738.16.7e-36100.00uncharacterized protein LOC111013581 isoform X2 [Momordica charantia][more]
XP_038881569.11.8e-2885.51uncharacterized protein LOC120073047 isoform X3 [Benincasa hispida][more]
XP_038881566.11.8e-2885.51uncharacterized protein LOC120073047 isoform X1 [Benincasa hispida][more]
XP_038881570.11.8e-2885.51uncharacterized protein LOC120073047 isoform X4 [Benincasa hispida][more]
BLAST of MS015829 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of MS015829 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1CRQ13.3e-36100.00uncharacterized protein LOC111013581 isoform X1 OS=Momordica charantia OX=3673 G... [more]
A0A6J1CRG23.3e-36100.00uncharacterized protein LOC111013581 isoform X2 OS=Momordica charantia OX=3673 G... [more]
A0A1S3BLJ81.5e-2884.51uncharacterized protein LOC103491166 isoform X3 OS=Cucumis melo OX=3656 GN=LOC10... [more]
A0A1S3BKX91.5e-2884.51uncharacterized protein LOC103491166 isoform X1 OS=Cucumis melo OX=3656 GN=LOC10... [more]
A0A1S3BLK01.5e-2884.51uncharacterized protein LOC103491166 isoform X2 OS=Cucumis melo OX=3656 GN=LOC10... [more]
BLAST of MS015829 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS015829.1MS015829.1mRNA