MS015818 (gene) Bitter gourd (TR) v1

Overview


Name	MS015818
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	thylakoid lumenal 15.0 kDa protein 2, chloroplastic
Location	scaffold943_2: 165266 .. 167801 (-)
RNA-Seq Expression	MS015818
Synteny	MS015818

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGTCTATTCACCTTCATCACCATCTTCCCTCTGCATCTATCTCCCTTCCCAAAGCCAAAGCTTCACCGCCCCTTTGCGCACCACCACTCTCCGTCTCCGCATCATCTCGCTTCTCTCCGCCATCATTTCCGACAATAAACCTAAATTTAACTGGTTTCACCAACTGGCTTCTCCATTTTCCTCCAAAATCTTTCAGTTTCGCGCTCTCTGGTGCTCTTGCGCTCGGAATAGCTCTCTCTGGTAATCAATCTTGCAACCTATAATCGTTTAGATGAAAAGTGAATGTCGGATTCTGTCCCATTTTTTTTTAGGTTCTAAAGTCGGATTAGGAAATCTGTTTGTTTAGTGAAGGAATTAGCTATACCTTACCATAGAAGTTTTTAGAATTTGATCGAAATGTATGACGGTAATTCAGTGAGCGTGCCTCGTAGGAGTTGGATTTGCGGACGCCAAAGTTGGGGTTAACAAACCAGAACTGCTTCCTAAGGAGTTCACCTCTGTCATTGATGTCGCCGGGTTTCTATCTGATGGCCAGGTGTGCTTGCTTTGCTTAACTTTTTTGTTTTTCCCTTTATTTCTGGTATGTTCTTTGGTGTAATTTTGGTTATTTGATCATGCTCAAGTGGCCATTGCTGATTCTGGTCTGCTCTGAACAGGAAGTTAGGCTCAAACAAGAAATAGCCGAGATTGAGAAGGATACTGGATATAAATTGCGAGTTTTGGCGCAAAATTATCCTGTGACACCAGGTTTACTATATGTTTTATCGTCTTTGCCATCCAGCAAGTTTGATTTCTGGATTAAAACACGATTCTATTGTTTTTAATTTATGATTAGAACACATTCATTATACACTTTTAATGTATATATTGGAATCTTCTACTGCGGGCTCCAAAAAAGAAAAGGTCGTCACTTTTTTTTGCACTGCATTTTTTAACCTCTAGTAGACTATTGTGCTTCAACCAACGCGCCTCATACTTTAAAAAACACTTTTCAAATAGCAGATCATGGAATTACTTTCACTTTTAACAGTAAGGACTTCATCGTTTGGAGTAAATCTTATTAGAAGAGAGTAAATGTATTTTAACATTTCTTTGTTGATACTTCATATACTTTGAATGTCTCTCTCACACAAACAATTGAAGCTTGTTGAGTTTGACGGATTTTGATCTAAAAAGCACAAACAATCGATGTAATGATTTTTACAGGGCTGGCAGTCAAAGATTTTTGGCAAGTGGATGATAGAACAATCGTGTTTGTTGCCGATCCTACATTTGGTATGAACAATATTAGGATACCTCTCTGCACCTGTAACTTTGATGACATCTGTTGACATCTTCGCTCAGGTAACATATTGAACTTCAACGTTGGAGCGACTGTGGATTTGGACATTCCACGGAGCTTTTGGAGCCGTTTGGCCGGGAAATACGGAAACATATTTTACTGGAAAGAAAAGGTAAAATTTTTAAATTGATATTTTTGTACAAAGTCCTGGTCGTGAGCAATTGCTATGTTCAGCAATATACGGTCATATCAGCAGCTCATATAATCACTCTTGTGACTTAAACAGGGTGAAGATACATCTATTGAATCAGCTGTCATGGCTATATCTAATTGCTTGAGAGAACCAGTCGGCCCAAATAACTGTTCTGAGATAAAGTAACAGCATCGAACAATTGTGTACGTATGTCGAACTAGATTTGGATGTTCTGACAGTGATACATAATATATAGCCAATTTTCATGTCTTAAATGAAATCCTGTTCTTTTCCTCAGTCAAGAACATGGTGTAAGTCTATTACTTGAAAACACTGGGAGTAGTGATAAAAAAAAGGTTTGAAGGAATTTGATTAATTGTGTAGACATTTGTATCTCAACTGTGCAGAGACCAAGAGAAAAAAAAAAGGAGGTGCAATTTTTAGTTGGCTAATAACTAGTTATCATATGAACACTAGATGCAACCCACTCCCCATTTTTCTGTTTTCTTCTGTCTTCTAAAATCTTCTGTAGTTCCTCGGGTGGACAAGGGACTGTTAGAGCTCCCTTTTGTTGGAATCCATATTCTTCCTTAGCCAGCTCCAATAGCCTCAAGAATGCAGGGCTAGACAATAACTCCAAATTAATGACAAATCTCTTTCTTTCATCACCATCCACTGCAAACACCACAAAATGGCCTTCTTCCACGTCTTTTGGTACCGTAACTGCTGCTTCGAATTCTTCATCCAAACTTCCAGGGTTAGGTTCTTTAGATAGCAGTGGAGAGAGGCTCTTTTGGAGCATAGCGATGAATAACCTTAGCATCATCAAGCTGAGATTCCGAAGCCTGTGTATCAATATTTCTCTCTTGTTTGCCACTATTAGGTGTGGGAAACAACTGTTTGCCGTGAACTCGAGGCTTCGGATAGAGCAGAATGAGAGTTAGAGGAGATTTATACTAATATGGGGACGTACATCAGAAGTTGCAGTGAAGCTTCTGAGAGGGCCATGTCTGAACCATTCCATGTGGGTGGCAGCAACATATCATTTAATGCTCAC

mRNA sequence

ATGGCGTCTATTCACCTTCATCACCATCTTCCCTCTGCATCTATCTCCCTTCCCAAAGCCAAAGCTTCACCGCCCCTTTGCGCACCACCACTCTCCGTCTCCGCATCATCTCGCTTCTCTCCGCCATCATTTCCGACAATAAACCTAAATTTAACTGGTTTCACCAACTGGCTTCTCCATTTTCCTCCAAAATCTTTCAGTTTCGCGCTCTCTGGTGCTCTTGCGCTCGGAATAGCTCTCTCTGGAGTTGGATTTGCGGACGCCAAAGTTGGGGTTAACAAACCAGAACTGCTTCCTAAGGAGTTCACCTCTGTCATTGATGTCGCCGGGTTTCTATCTGATGGCCAGGAAGTTAGGCTCAAACAAGAAATAGCCGAGATTGAGAAGGATACTGGATATAAATTGCGAGTTTTGGCGCAAAATTATCCTGTGACACCAGGGCTGGCAGTCAAAGATTTTTGGCAAGTGGATGATAGAACAATCGTGTTTGTTGCCGATCCTACATTTGGTAACATATTGAACTTCAACGTTGGAGCGACTGTGGATTTGGACATTCCACGGAGCTTTTGGAGCCGTTTGGCCGGGAAATACGGAAACATATTTTACTGGAAAGAAAAGGGTGAAGATACATCTATTGAATCAGCTGTCATGGCTATATCTAATTGCTTGAGAGAACCAGTCGGCCCAAATAACTGTTCTGAGATAAATTCCTCGGGTGGACAAGGGACTGTTAGAGCTCCCTTTTGTTGGAATCCATATTCTTCCTTAGCCAGCTCCAATAGCCTCAAGAATGCAGGGCTAGACAATAACTCCAAATTAATGACAAATCTCTTTCTTTCATCACCATCCACTGCAAACACCACAAAATGGCCTTCTTCCACGTCTTTTGGTACCGTAACTGCTGCTTCGAATTCTTCATCCAAACTTCCAGGGTTAGGTTCTTTAGATAGCAGTGGAGAGAGGCTCTTTTGGAGCATAGCGATGAATAACCTTAGCATCATCAAGCTGAGATTCCGAAGCCTGTGTATCAATATTTCTCTCTTGTTTGCCACTATTAGGTGTGGGAAACAACTGTTTGCCGTGAACTCGAGGCTTCGGATAGAGCAGAATGAGAGTGAGGAGATTTATACTAATATGGGGACGTACATCAGAAGTTGCAGTGAAGCTTCTGAGAGGGCCATGTCTGAACCATTCCATGTGGGTGGCAGCAACATATCATTTAATGCTCAC

Coding sequence (CDS)

ATGGCGTCTATTCACCTTCATCACCATCTTCCCTCTGCATCTATCTCCCTTCCCAAAGCCAAAGCTTCACCGCCCCTTTGCGCACCACCACTCTCCGTCTCCGCATCATCTCGCTTCTCTCCGCCATCATTTCCGACAATAAACCTAAATTTAACTGGTTTCACCAACTGGCTTCTCCATTTTCCTCCAAAATCTTTCAGTTTCGCGCTCTCTGGTGCTCTTGCGCTCGGAATAGCTCTCTCTGGAGTTGGATTTGCGGACGCCAAAGTTGGGGTTAACAAACCAGAACTGCTTCCTAAGGAGTTCACCTCTGTCATTGATGTCGCCGGGTTTCTATCTGATGGCCAGGAAGTTAGGCTCAAACAAGAAATAGCCGAGATTGAGAAGGATACTGGATATAAATTGCGAGTTTTGGCGCAAAATTATCCTGTGACACCAGGGCTGGCAGTCAAAGATTTTTGGCAAGTGGATGATAGAACAATCGTGTTTGTTGCCGATCCTACATTTGGTAACATATTGAACTTCAACGTTGGAGCGACTGTGGATTTGGACATTCCACGGAGCTTTTGGAGCCGTTTGGCCGGGAAATACGGAAACATATTTTACTGGAAAGAAAAGGGTGAAGATACATCTATTGAATCAGCTGTCATGGCTATATCTAATTGCTTGAGAGAACCAGTCGGCCCAAATAACTGTTCTGAGATAAATTCCTCGGGTGGACAAGGGACTGTTAGAGCTCCCTTTTGTTGGAATCCATATTCTTCCTTAGCCAGCTCCAATAGCCTCAAGAATGCAGGGCTAGACAATAACTCCAAATTAATGACAAATCTCTTTCTTTCATCACCATCCACTGCAAACACCACAAAATGGCCTTCTTCCACGTCTTTTGGTACCGTAACTGCTGCTTCGAATTCTTCATCCAAACTTCCAGGGTTAGGTTCTTTAGATAGCAGTGGAGAGAGGCTCTTTTGGAGCATAGCGATGAATAACCTTAGCATCATCAAGCTGAGATTCCGAAGCCTGTGTATCAATATTTCTCTCTTGTTTGCCACTATTAGGTGTGGGAAACAACTGTTTGCCGTGAACTCGAGGCTTCGGATAGAGCAGAATGAGAGTGAGGAGATTTATACTAATATGGGGACGTACATCAGAAGTTGCAGTGAAGCTTCTGAGAGGGCCATGTCTGAACCATTCCATGTGGGTGGCAGCAACATATCATTTAATGCTCAC

Protein sequence

MASIHLHHHLPSASISLPKAKASPPLCAPPLSVSASSRFSPPSFPTINLNLTGFTNWLLHFPPKSFSFALSGALALGIALSGVGFADAKVGVNKPELLPKEFTSVIDVAGFLSDGQEVRLKQEIAEIEKDTGYKLRVLAQNYPVTPGLAVKDFWQVDDRTIVFVADPTFGNILNFNVGATVDLDIPRSFWSRLAGKYGNIFYWKEKGEDTSIESAVMAISNCLREPVGPNNCSEINSSGGQGTVRAPFCWNPYSSLASSNSLKNAGLDNNSKLMTNLFLSSPSTANTTKWPSSTSFGTVTAASNSSSKLPGLGSLDSSGERLFWSIAMNNLSIIKLRFRSLCINISLLFATIRCGKQLFAVNSRLRIEQNESEEIYTNMGTYIRSCSEASERAMSEPFHVGGSNISFNAH

Homology

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BLAST of MS015818 vs. NCBI nr
Match: XP_022143943.1 (thylakoid lumenal 15.0 kDa protein 2, chloroplastic [Momordica charantia])

HSP 1 Score: 475.3 bits (1222), Expect = 5.2e-130
Identity = 235/235 (100.00%), Postives = 235/235 (100.00%), Query Frame = 0


Query: 1   MASIHLHHHLPSASISLPKAKASPPLCAPPLSVSASSRFSPPSFPTINLNLTGFTNWLLH 60
           MASIHLHHHLPSASISLPKAKASPPLCAPPLSVSASSRFSPPSFPTINLNLTGFTNWLLH
Sbjct: 1   MASIHLHHHLPSASISLPKAKASPPLCAPPLSVSASSRFSPPSFPTINLNLTGFTNWLLH 60

Query: 61  FPPKSFSFALSGALALGIALSGVGFADAKVGVNKPELLPKEFTSVIDVAGFLSDGQEVRL 120
           FPPKSFSFALSGALALGIALSGVGFADAKVGVNKPELLPKEFTSVIDVAGFLSDGQEVRL
Sbjct: 61  FPPKSFSFALSGALALGIALSGVGFADAKVGVNKPELLPKEFTSVIDVAGFLSDGQEVRL 120

Query: 121 KQEIAEIEKDTGYKLRVLAQNYPVTPGLAVKDFWQVDDRTIVFVADPTFGNILNFNVGAT 180
           KQEIAEIEKDTGYKLRVLAQNYPVTPGLAVKDFWQVDDRTIVFVADPTFGNILNFNVGAT
Sbjct: 121 KQEIAEIEKDTGYKLRVLAQNYPVTPGLAVKDFWQVDDRTIVFVADPTFGNILNFNVGAT 180

Query: 181 VDLDIPRSFWSRLAGKYGNIFYWKEKGEDTSIESAVMAISNCLREPVGPNNCSEI 236
           VDLDIPRSFWSRLAGKYGNIFYWKEKGEDTSIESAVMAISNCLREPVGPNNCSEI
Sbjct: 181 VDLDIPRSFWSRLAGKYGNIFYWKEKGEDTSIESAVMAISNCLREPVGPNNCSEI 235

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BLAST of MS015818 vs. NCBI nr
Match: XP_023543502.1 (thylakoid lumenal 15.0 kDa protein 2, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 391.3 bits (1004), Expect = 9.9e-105
Identity = 198/235 (84.26%), Postives = 211/235 (89.79%), Query Frame = 0


Query: 1   MASIHLHHHLPSASISLPKAKASPPLCAPPLSVSASSRFSPPSFPTINLNLTGFTNWLLH 60
           MA +HLHH LPS S+S P   ASPP+     S+ ASSRFSPPS    + NLTGFTN LLH
Sbjct: 1   MAFMHLHHRLPSPSLSFP--GASPPVYRS--SIFASSRFSPPSVSFPSHNLTGFTNCLLH 60

Query: 61  FPPKSFSFALSGALALGIALSGVGFADAKVGVNKPELLPKEFTSVIDVAGFLSDGQEVRL 120
            PPKS SFALS  LALG+ALSGVGFADAKVGVNKPELLPKEFTSVIDVAGFLSDGQE+RL
Sbjct: 61  LPPKSLSFALSWTLALGVALSGVGFADAKVGVNKPELLPKEFTSVIDVAGFLSDGQELRL 120

Query: 121 KQEIAEIEKDTGYKLRVLAQNYPVTPGLAVKDFWQVDDRTIVFVADPTFGNILNFNVGAT 180
           KQEIA+IEKDTGYKLRVLAQNYPVTPGLA+KDFWQVDD+TIVFVADPTFGNILNFNVGA+
Sbjct: 121 KQEIADIEKDTGYKLRVLAQNYPVTPGLAIKDFWQVDDKTIVFVADPTFGNILNFNVGAS 180

Query: 181 VDLDIPRSFWSRLAGKYGNIFYWKEKGEDTSIESAVMAISNCLREPVGPNNCSEI 236
           VDLDIPRSFWSRLAGKYGNIFYWKEKGE+ SIE+AVMAISNCLREPVGPNNCSEI
Sbjct: 181 VDLDIPRSFWSRLAGKYGNIFYWKEKGEEASIEAAVMAISNCLREPVGPNNCSEI 231

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BLAST of MS015818 vs. NCBI nr
Match: XP_038881208.1 (thylakoid lumenal 15.0 kDa protein 2, chloroplastic [Benincasa hispida])

HSP 1 Score: 390.2 bits (1001), Expect = 2.2e-104
Identity = 196/235 (83.40%), Postives = 207/235 (88.09%), Query Frame = 0


Query: 1   MASIHLHHHLPSASISLPKAKASPPLCAPPLSVSASSRFSPPSFPTINLNLTGFTNWLLH 60
           MA +HLHHHLPS S+S    + SPP+        +S RFSPPSF   +   T F+NWLLH
Sbjct: 1   MAFMHLHHHLPSPSLSF--FRPSPPV------FRSSFRFSPPSFSFPSQKCTDFSNWLLH 60

Query: 61  FPPKSFSFALSGALALGIALSGVGFADAKVGVNKPELLPKEFTSVIDVAGFLSDGQEVRL 120
           FP KS SFA SGALALGIALSGVGFADAKVGVNKPELLPKEFTSVIDVAGFLSDGQE+RL
Sbjct: 61  FPKKSLSFAFSGALALGIALSGVGFADAKVGVNKPELLPKEFTSVIDVAGFLSDGQEIRL 120

Query: 121 KQEIAEIEKDTGYKLRVLAQNYPVTPGLAVKDFWQVDDRTIVFVADPTFGNILNFNVGAT 180
           KQEIA IEKDTGYKLRVLAQNYP+TPGLA+KDFW+VDDRTIVFVADPTFGNILNFNVGAT
Sbjct: 121 KQEIANIEKDTGYKLRVLAQNYPLTPGLAIKDFWKVDDRTIVFVADPTFGNILNFNVGAT 180

Query: 181 VDLDIPRSFWSRLAGKYGNIFYWKEKGEDTSIESAVMAISNCLREPVGPNNCSEI 236
           VDLDIPRSFWSRLAGKYGNIFYWKEKGED SIESAVMAISNCLREPVGPNNCSEI
Sbjct: 181 VDLDIPRSFWSRLAGKYGNIFYWKEKGEDASIESAVMAISNCLREPVGPNNCSEI 227

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BLAST of MS015818 vs. NCBI nr
Match: XP_004143269.1 (thylakoid lumenal 15.0 kDa protein 2, chloroplastic [Cucumis sativus] >KGN48184.1 hypothetical protein Csa_003336 [Cucumis sativus])

HSP 1 Score: 386.7 bits (992), Expect = 2.4e-103
Identity = 195/235 (82.98%), Postives = 208/235 (88.51%), Query Frame = 0


Query: 1   MASIHLHHHLPSASISLPKAKASPPLCAPPLSVSASSRFSPPSFPTINLNLTGFTNWLLH 60
           MA +HLHHHLPS S+S   ++ SPPLC       +SSRFSPPS P  +   T F++ LLH
Sbjct: 1   MAFMHLHHHLPSPSLSF--SRPSPPLC------RSSSRFSPPSSPLPSQKYTDFSHRLLH 60

Query: 61  FPPKSFSFALSGALALGIALSGVGFADAKVGVNKPELLPKEFTSVIDVAGFLSDGQEVRL 120
            P KS SF LSGALALGI LSGVGFADAKVGVNKPELLPKEFTSVIDVAGFLSDGQE+RL
Sbjct: 61  LPQKSLSFVLSGALALGITLSGVGFADAKVGVNKPELLPKEFTSVIDVAGFLSDGQEIRL 120

Query: 121 KQEIAEIEKDTGYKLRVLAQNYPVTPGLAVKDFWQVDDRTIVFVADPTFGNILNFNVGAT 180
           KQEIA+IEKDTGYKLRVLAQNYPVTPGLA+KDFWQVDDRTIVFVADPTFGNILNFNVGAT
Sbjct: 121 KQEIADIEKDTGYKLRVLAQNYPVTPGLAIKDFWQVDDRTIVFVADPTFGNILNFNVGAT 180

Query: 181 VDLDIPRSFWSRLAGKYGNIFYWKEKGEDTSIESAVMAISNCLREPVGPNNCSEI 236
           VDLDIPRSFWSRLAGKYGNIFYWKEKGED+SIESAVMAIS+CLREPVG NNCSEI
Sbjct: 181 VDLDIPRSFWSRLAGKYGNIFYWKEKGEDSSIESAVMAISSCLREPVGANNCSEI 227

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BLAST of MS015818 vs. NCBI nr
Match: XP_022979097.1 (thylakoid lumenal 15.0 kDa protein 2, chloroplastic-like [Cucurbita maxima])

HSP 1 Score: 384.0 bits (985), Expect = 1.6e-102
Identity = 195/235 (82.98%), Postives = 208/235 (88.51%), Query Frame = 0


Query: 1   MASIHLHHHLPSASISLPKAKASPPLCAPPLSVSASSRFSPPSFPTINLNLTGFTNWLLH 60
           MA +HLHH LPS S+S P   ASPP+     S+ ASSRFSPPS    +  LT FTN LLH
Sbjct: 1   MAFMHLHHRLPSPSLSFP--GASPPVYRS--SIFASSRFSPPSVSFPSHKLTDFTNCLLH 60

Query: 61  FPPKSFSFALSGALALGIALSGVGFADAKVGVNKPELLPKEFTSVIDVAGFLSDGQEVRL 120
            PPKS SFALS  LALG+ALSGVGFADAKVGVNKPELLPKEFTSVIDVAGFLSDGQE RL
Sbjct: 61  LPPKSLSFALSWTLALGVALSGVGFADAKVGVNKPELLPKEFTSVIDVAGFLSDGQEFRL 120

Query: 121 KQEIAEIEKDTGYKLRVLAQNYPVTPGLAVKDFWQVDDRTIVFVADPTFGNILNFNVGAT 180
           KQEIA+IEKDTGYKLRVLAQN+PVTPGLA+KDFWQVDD+TIVFVADPTFGNILNFNVGA+
Sbjct: 121 KQEIADIEKDTGYKLRVLAQNFPVTPGLAIKDFWQVDDKTIVFVADPTFGNILNFNVGAS 180

Query: 181 VDLDIPRSFWSRLAGKYGNIFYWKEKGEDTSIESAVMAISNCLREPVGPNNCSEI 236
           VDLDIPRSFWSRLAGKYGNIFYWKEKGE+ SIE+AVMAISNCLREPVGPNNCSEI
Sbjct: 181 VDLDIPRSFWSRLAGKYGNIFYWKEKGEEASIEAAVMAISNCLREPVGPNNCSEI 231

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BLAST of MS015818 vs. ExPASy Swiss-Prot
Match: Q9LVV5 (Thylakoid lumenal 15.0 kDa protein 2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At5g52970 PE=1 SV=2)

HSP 1 Score: 320.1 bits (819), Expect = 3.7e-86
Identity = 161/204 (78.92%), Postives = 175/204 (85.78%), Query Frame = 0


Query: 33  VSASSRFSPPSFPTINLNLTG-FTNWLLHFPPKSFSFALSGALALGIALSGVGFADAKVG 92
           VS+SSR S        L  +G   NW+  F  KS S   SGALALG++LSGVGFADAKVG
Sbjct: 27  VSSSSRLS--------LKTSGDEENWVSRFRSKSLSLVFSGALALGLSLSGVGFADAKVG 86

Query: 93  VNKPELLPKEFTSVIDVAGFLSDGQEVRLKQEIAEIEKDTGYKLRVLAQNYPVTPGLAVK 152
           VNKPELLPKEFTSVIDVA FLS+GQE R+ QEIA +EKDTG+KLRVLAQNYPVTPGLA+K
Sbjct: 87  VNKPELLPKEFTSVIDVADFLSNGQEKRIAQEIANLEKDTGFKLRVLAQNYPVTPGLAIK 146

Query: 153 DFWQVDDRTIVFVADPTFGNILNFNVGATVDLDIPRSFWSRLAGKYGNIFYWKEKGEDTS 212
           DFWQVDD TIVFVADPTFGNILNFNVGATVDLDIPRSFWSRLAGKYGN+FYWKEKGED S
Sbjct: 147 DFWQVDDSTIVFVADPTFGNILNFNVGATVDLDIPRSFWSRLAGKYGNMFYWKEKGEDAS 206

Query: 213 IESAVMAISNCLREPVGPNNCSEI 236
           IE+AVMAIS+CLREPVG NNC+EI
Sbjct: 207 IEAAVMAISSCLREPVGRNNCAEI 222

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BLAST of MS015818 vs. ExPASy TrEMBL
Match: A0A6J1CRY9 (thylakoid lumenal 15.0 kDa protein 2, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111013734 PE=4 SV=1)

HSP 1 Score: 475.3 bits (1222), Expect = 2.5e-130
Identity = 235/235 (100.00%), Postives = 235/235 (100.00%), Query Frame = 0


Query: 1   MASIHLHHHLPSASISLPKAKASPPLCAPPLSVSASSRFSPPSFPTINLNLTGFTNWLLH 60
           MASIHLHHHLPSASISLPKAKASPPLCAPPLSVSASSRFSPPSFPTINLNLTGFTNWLLH
Sbjct: 1   MASIHLHHHLPSASISLPKAKASPPLCAPPLSVSASSRFSPPSFPTINLNLTGFTNWLLH 60

Query: 61  FPPKSFSFALSGALALGIALSGVGFADAKVGVNKPELLPKEFTSVIDVAGFLSDGQEVRL 120
           FPPKSFSFALSGALALGIALSGVGFADAKVGVNKPELLPKEFTSVIDVAGFLSDGQEVRL
Sbjct: 61  FPPKSFSFALSGALALGIALSGVGFADAKVGVNKPELLPKEFTSVIDVAGFLSDGQEVRL 120

Query: 121 KQEIAEIEKDTGYKLRVLAQNYPVTPGLAVKDFWQVDDRTIVFVADPTFGNILNFNVGAT 180
           KQEIAEIEKDTGYKLRVLAQNYPVTPGLAVKDFWQVDDRTIVFVADPTFGNILNFNVGAT
Sbjct: 121 KQEIAEIEKDTGYKLRVLAQNYPVTPGLAVKDFWQVDDRTIVFVADPTFGNILNFNVGAT 180

Query: 181 VDLDIPRSFWSRLAGKYGNIFYWKEKGEDTSIESAVMAISNCLREPVGPNNCSEI 236
           VDLDIPRSFWSRLAGKYGNIFYWKEKGEDTSIESAVMAISNCLREPVGPNNCSEI
Sbjct: 181 VDLDIPRSFWSRLAGKYGNIFYWKEKGEDTSIESAVMAISNCLREPVGPNNCSEI 235

[Close]

BLAST of MS015818 vs. ExPASy TrEMBL
Match: A0A0A0KH91 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G446440 PE=4 SV=1)

HSP 1 Score: 386.7 bits (992), Expect = 1.2e-103
Identity = 195/235 (82.98%), Postives = 208/235 (88.51%), Query Frame = 0


Query: 1   MASIHLHHHLPSASISLPKAKASPPLCAPPLSVSASSRFSPPSFPTINLNLTGFTNWLLH 60
           MA +HLHHHLPS S+S   ++ SPPLC       +SSRFSPPS P  +   T F++ LLH
Sbjct: 1   MAFMHLHHHLPSPSLSF--SRPSPPLC------RSSSRFSPPSSPLPSQKYTDFSHRLLH 60

Query: 61  FPPKSFSFALSGALALGIALSGVGFADAKVGVNKPELLPKEFTSVIDVAGFLSDGQEVRL 120
            P KS SF LSGALALGI LSGVGFADAKVGVNKPELLPKEFTSVIDVAGFLSDGQE+RL
Sbjct: 61  LPQKSLSFVLSGALALGITLSGVGFADAKVGVNKPELLPKEFTSVIDVAGFLSDGQEIRL 120

Query: 121 KQEIAEIEKDTGYKLRVLAQNYPVTPGLAVKDFWQVDDRTIVFVADPTFGNILNFNVGAT 180
           KQEIA+IEKDTGYKLRVLAQNYPVTPGLA+KDFWQVDDRTIVFVADPTFGNILNFNVGAT
Sbjct: 121 KQEIADIEKDTGYKLRVLAQNYPVTPGLAIKDFWQVDDRTIVFVADPTFGNILNFNVGAT 180

Query: 181 VDLDIPRSFWSRLAGKYGNIFYWKEKGEDTSIESAVMAISNCLREPVGPNNCSEI 236
           VDLDIPRSFWSRLAGKYGNIFYWKEKGED+SIESAVMAIS+CLREPVG NNCSEI
Sbjct: 181 VDLDIPRSFWSRLAGKYGNIFYWKEKGEDSSIESAVMAISSCLREPVGANNCSEI 227

[Close]

BLAST of MS015818 vs. ExPASy TrEMBL
Match: A0A6J1IMV5 (thylakoid lumenal 15.0 kDa protein 2, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111478838 PE=4 SV=1)

HSP 1 Score: 384.0 bits (985), Expect = 7.7e-103
Identity = 195/235 (82.98%), Postives = 208/235 (88.51%), Query Frame = 0


Query: 1   MASIHLHHHLPSASISLPKAKASPPLCAPPLSVSASSRFSPPSFPTINLNLTGFTNWLLH 60
           MA +HLHH LPS S+S P   ASPP+     S+ ASSRFSPPS    +  LT FTN LLH
Sbjct: 1   MAFMHLHHRLPSPSLSFP--GASPPVYRS--SIFASSRFSPPSVSFPSHKLTDFTNCLLH 60

Query: 61  FPPKSFSFALSGALALGIALSGVGFADAKVGVNKPELLPKEFTSVIDVAGFLSDGQEVRL 120
            PPKS SFALS  LALG+ALSGVGFADAKVGVNKPELLPKEFTSVIDVAGFLSDGQE RL
Sbjct: 61  LPPKSLSFALSWTLALGVALSGVGFADAKVGVNKPELLPKEFTSVIDVAGFLSDGQEFRL 120

Query: 121 KQEIAEIEKDTGYKLRVLAQNYPVTPGLAVKDFWQVDDRTIVFVADPTFGNILNFNVGAT 180
           KQEIA+IEKDTGYKLRVLAQN+PVTPGLA+KDFWQVDD+TIVFVADPTFGNILNFNVGA+
Sbjct: 121 KQEIADIEKDTGYKLRVLAQNFPVTPGLAIKDFWQVDDKTIVFVADPTFGNILNFNVGAS 180

Query: 181 VDLDIPRSFWSRLAGKYGNIFYWKEKGEDTSIESAVMAISNCLREPVGPNNCSEI 236
           VDLDIPRSFWSRLAGKYGNIFYWKEKGE+ SIE+AVMAISNCLREPVGPNNCSEI
Sbjct: 181 VDLDIPRSFWSRLAGKYGNIFYWKEKGEEASIEAAVMAISNCLREPVGPNNCSEI 231

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BLAST of MS015818 vs. ExPASy TrEMBL
Match: A0A1S3CH24 (thylakoid lumenal 15.0 kDa protein 2, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103500819 PE=4 SV=1)

HSP 1 Score: 382.1 bits (980), Expect = 2.9e-102
Identity = 194/235 (82.55%), Postives = 206/235 (87.66%), Query Frame = 0


Query: 1   MASIHLHHHLPSASISLPKAKASPPLCAPPLSVSASSRFSPPSFPTINLNLTGFTNWLLH 60
           MA +HLHHHLPS S+S   +++S PLC       +SSRFSPPS P  +   T F + LLH
Sbjct: 1   MAFMHLHHHLPSPSLSF--SRSSLPLC------RSSSRFSPPSSPFPSKKYTDFGDRLLH 60

Query: 61  FPPKSFSFALSGALALGIALSGVGFADAKVGVNKPELLPKEFTSVIDVAGFLSDGQEVRL 120
            P K  SF LSGALALGI LSGVGFADAKVGVNKPELLPKEFTSVIDVAGFLSDGQE+RL
Sbjct: 61  LPQKPLSFVLSGALALGITLSGVGFADAKVGVNKPELLPKEFTSVIDVAGFLSDGQEIRL 120

Query: 121 KQEIAEIEKDTGYKLRVLAQNYPVTPGLAVKDFWQVDDRTIVFVADPTFGNILNFNVGAT 180
           KQEIA+IEKDTGYKLRVLAQNYP TPGLAVKDFWQVDDRTIVFVADPTFGNILNFNVGAT
Sbjct: 121 KQEIADIEKDTGYKLRVLAQNYPATPGLAVKDFWQVDDRTIVFVADPTFGNILNFNVGAT 180

Query: 181 VDLDIPRSFWSRLAGKYGNIFYWKEKGEDTSIESAVMAISNCLREPVGPNNCSEI 236
           VDLDIPRSFWSRLAGKYGNIFYWKEKGED+SIESAVMAIS+CLREPVGPNNCSEI
Sbjct: 181 VDLDIPRSFWSRLAGKYGNIFYWKEKGEDSSIESAVMAISSCLREPVGPNNCSEI 227

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BLAST of MS015818 vs. ExPASy TrEMBL
Match: A0A6J1EJL7 (thylakoid lumenal 15.0 kDa protein 2, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111433197 PE=4 SV=1)

HSP 1 Score: 380.2 bits (975), Expect = 1.1e-101
Identity = 193/235 (82.13%), Postives = 206/235 (87.66%), Query Frame = 0


Query: 1   MASIHLHHHLPSASISLPKAKASPPLCAPPLSVSASSRFSPPSFPTINLNLTGFTNWLLH 60
           MA +HLHH LPS S+S P   ASPP+     S+ A SRFSPPS    +   T FTN LLH
Sbjct: 1   MAFMHLHHRLPSPSLSFP--GASPPVYRS--SIFALSRFSPPSVSFPSHKFTDFTNCLLH 60

Query: 61  FPPKSFSFALSGALALGIALSGVGFADAKVGVNKPELLPKEFTSVIDVAGFLSDGQEVRL 120
            PPKS SFALS  LALG+ALSGVGFADAKVGVNKPELLPKEFTSVIDVAGFLSDGQE RL
Sbjct: 61  LPPKSLSFALSWTLALGVALSGVGFADAKVGVNKPELLPKEFTSVIDVAGFLSDGQEFRL 120

Query: 121 KQEIAEIEKDTGYKLRVLAQNYPVTPGLAVKDFWQVDDRTIVFVADPTFGNILNFNVGAT 180
           KQEIA+IEK+TGYKLRVLAQNYPVTPGLA+KDFWQVDD+TIVFVADPTFGNILNFNVGA+
Sbjct: 121 KQEIADIEKETGYKLRVLAQNYPVTPGLAIKDFWQVDDKTIVFVADPTFGNILNFNVGAS 180

Query: 181 VDLDIPRSFWSRLAGKYGNIFYWKEKGEDTSIESAVMAISNCLREPVGPNNCSEI 236
           VDLDIPRSFWSRLAGKYGNIFYWKEKGE+ SIE+AVMAISNCLREPVGPNNCSEI
Sbjct: 181 VDLDIPRSFWSRLAGKYGNIFYWKEKGEEASIEAAVMAISNCLREPVGPNNCSEI 231

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BLAST of MS015818 vs. TAIR 10
Match: AT5G52970.1 (thylakoid lumen 15.0 kDa protein )

HSP 1 Score: 320.1 bits (819), Expect = 2.6e-87
Identity = 161/204 (78.92%), Postives = 175/204 (85.78%), Query Frame = 0


Query: 33  VSASSRFSPPSFPTINLNLTG-FTNWLLHFPPKSFSFALSGALALGIALSGVGFADAKVG 92
           VS+SSR S        L  +G   NW+  F  KS S   SGALALG++LSGVGFADAKVG
Sbjct: 27  VSSSSRLS--------LKTSGDEENWVSRFRSKSLSLVFSGALALGLSLSGVGFADAKVG 86

Query: 93  VNKPELLPKEFTSVIDVAGFLSDGQEVRLKQEIAEIEKDTGYKLRVLAQNYPVTPGLAVK 152
           VNKPELLPKEFTSVIDVA FLS+GQE R+ QEIA +EKDTG+KLRVLAQNYPVTPGLA+K
Sbjct: 87  VNKPELLPKEFTSVIDVADFLSNGQEKRIAQEIANLEKDTGFKLRVLAQNYPVTPGLAIK 146

Query: 153 DFWQVDDRTIVFVADPTFGNILNFNVGATVDLDIPRSFWSRLAGKYGNIFYWKEKGEDTS 212
           DFWQVDD TIVFVADPTFGNILNFNVGATVDLDIPRSFWSRLAGKYGN+FYWKEKGED S
Sbjct: 147 DFWQVDDSTIVFVADPTFGNILNFNVGATVDLDIPRSFWSRLAGKYGNMFYWKEKGEDAS 206

Query: 213 IESAVMAISNCLREPVGPNNCSEI 236
           IE+AVMAIS+CLREPVG NNC+EI
Sbjct: 207 IEAAVMAISSCLREPVGRNNCAEI 222

The following BLAST results are available for this feature:

BLAST of MS015818 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022143943.1	5.2e-130	100.00	thylakoid lumenal 15.0 kDa protein 2, chloroplastic [Momordica charantia]	[more]
XP_023543502.1	9.9e-105	84.26	thylakoid lumenal 15.0 kDa protein 2, chloroplastic-like [Cucurbita pepo subsp. ...	[more]
XP_038881208.1	2.2e-104	83.40	thylakoid lumenal 15.0 kDa protein 2, chloroplastic [Benincasa hispida]	[more]
XP_004143269.1	2.4e-103	82.98	thylakoid lumenal 15.0 kDa protein 2, chloroplastic [Cucumis sativus] >KGN48184....	[more]
XP_022979097.1	1.6e-102	82.98	thylakoid lumenal 15.0 kDa protein 2, chloroplastic-like [Cucurbita maxima]	[more]

BLAST of MS015818 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LVV5	3.7e-86	78.92	Thylakoid lumenal 15.0 kDa protein 2, chloroplastic OS=Arabidopsis thaliana OX=3...	[more]

BLAST of MS015818 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CRY9	2.5e-130	100.00	thylakoid lumenal 15.0 kDa protein 2, chloroplastic OS=Momordica charantia OX=36...	[more]
A0A0A0KH91	1.2e-103	82.98	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G446440 PE=4 SV=1	[more]
A0A6J1IMV5	7.7e-103	82.98	thylakoid lumenal 15.0 kDa protein 2, chloroplastic-like OS=Cucurbita maxima OX=...	[more]
A0A1S3CH24	2.9e-102	82.55	thylakoid lumenal 15.0 kDa protein 2, chloroplastic OS=Cucumis melo OX=3656 GN=L...	[more]
A0A6J1EJL7	1.1e-101	82.13	thylakoid lumenal 15.0 kDa protein 2, chloroplastic-like OS=Cucurbita moschata O...	[more]

BLAST of MS015818 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G52970.1	2.6e-87	78.92	thylakoid lumen 15.0 kDa protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR35514	FAMILY NOT NAMED	coord: 47..235

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS015818.1	MS015818.1	mRNA