MS015456 (gene) Bitter gourd (TR) v1

Overview


Name	MS015456
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Serine-type endopeptidase inhibitor, putative
Location	scaffold424: 212357 .. 212509 (+)
RNA-Seq Expression	MS015456
Synteny	MS015456

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

AGACCCGCTAGAGGGTGCCCACTTTTCTGCATGGATGCCTCCTACATGACCTGCCTTGCCTCCGACGACCACCGCCTATCTCCGCCTTGCTACTGCTGCTTCGCCTCTAACGGCTGCACCATTTCCTTATCAAATGGAATCACCATCCGATGT

mRNA sequence

AGACCCGCTAGAGGGTGCCCACTTTTCTGCATGGATGCCTCCTACATGACCTGCCTTGCCTCCGACGACCACCGCCTATCTCCGCCTTGCTACTGCTGCTTCGCCTCTAACGGCTGCACCATTTCCTTATCAAATGGAATCACCATCCGATGT

Coding sequence (CDS)

AGACCCGCTAGAGGGTGCCCACTTTTCTGCATGGATGCCTCCTACATGACCTGCCTTGCCTCCGACGACCACCGCCTATCTCCGCCTTGCTACTGCTGCTTCGCCTCTAACGGCTGCACCATTTCCTTATCAAATGGAATCACCATCCGATGT

Protein sequence

RPARGCPLFCMDASYMTCLASDDHRLSPPCYCCFASNGCTISLSNGITIRC

Homology

[Close]

BLAST of MS015456 vs. NCBI nr
Match: KAF8025531.1 (hypothetical protein BT93_F2384 [Corymbia citriodora subsp. variegata])

HSP 1 Score: 65.9 bits (159), Expect = 1.2e-07
Identity = 25/49 (51.02%), Postives = 33/49 (67.35%), Query Frame = 0


Query: 3  ARGCPLFCMDASYMTCLASDDHRLSPPCYCCFASNGCTISLSNGITIRC 52
          A  CPL+C+D  YMTC ++ D  LSP C CC A  GCT+ LS+G ++ C
Sbjct: 32 ADACPLYCLDVDYMTCPSTGDEHLSPQCNCCLAPEGCTLHLSDGTSVYC 80

[Close]

BLAST of MS015456 vs. NCBI nr
Match: KAF7847095.1 (hypothetical protein BT93_L3368 [Corymbia citriodora subsp. variegata])

HSP 1 Score: 65.9 bits (159), Expect = 1.2e-07
Identity = 25/49 (51.02%), Postives = 33/49 (67.35%), Query Frame = 0


Query: 3  ARGCPLFCMDASYMTCLASDDHRLSPPCYCCFASNGCTISLSNGITIRC 52
          A  CPL+C+D  YMTC ++ D  LSP C CC A  GCT+ LS+G ++ C
Sbjct: 32 ADACPLYCLDVDYMTCPSTGDEHLSPQCNCCLAPEGCTLHLSDGTSVYC 80

[Close]

BLAST of MS015456 vs. NCBI nr
Match: KAF8025551.1 (hypothetical protein BT93_F2402 [Corymbia citriodora subsp. variegata])

HSP 1 Score: 65.9 bits (159), Expect = 1.2e-07
Identity = 24/49 (48.98%), Postives = 34/49 (69.39%), Query Frame = 0


Query: 3  ARGCPLFCMDASYMTCLASDDHRLSPPCYCCFASNGCTISLSNGITIRC 52
          A  CPL+C+D  YMTC ++ D  LSP C CC A  GCT+ L++G+++ C
Sbjct: 32 ADACPLYCLDVDYMTCPSTGDEHLSPQCNCCLAPEGCTLHLTDGMSVSC 80

[Close]

BLAST of MS015456 vs. NCBI nr
Match: KAF8025527.1 (hypothetical protein BT93_F2380 [Corymbia citriodora subsp. variegata])

HSP 1 Score: 65.9 bits (159), Expect = 1.2e-07
Identity = 24/49 (48.98%), Postives = 34/49 (69.39%), Query Frame = 0


Query: 3  ARGCPLFCMDASYMTCLASDDHRLSPPCYCCFASNGCTISLSNGITIRC 52
          A  CPL+C+D  YMTC ++ D  LSP C CC A  GCT+ L++G+++ C
Sbjct: 32 ADACPLYCLDVDYMTCPSTGDEHLSPQCNCCLAPEGCTLHLTDGMSVSC 80

[Close]

BLAST of MS015456 vs. NCBI nr
Match: KAF8025554.1 (hypothetical protein BT93_F2405 [Corymbia citriodora subsp. variegata])

HSP 1 Score: 64.7 bits (156), Expect = 2.6e-07
Identity = 24/49 (48.98%), Postives = 33/49 (67.35%), Query Frame = 0


Query: 3  ARGCPLFCMDASYMTCLASDDHRLSPPCYCCFASNGCTISLSNGITIRC 52
          A  CPL+C+D  YMTC ++ D  LSP C CC A  GCT+ L++G ++ C
Sbjct: 32 ADACPLYCLDVDYMTCPSTGDEHLSPQCNCCLAPEGCTLHLTDGTSVYC 80

[Close]

BLAST of MS015456 vs. ExPASy TrEMBL
Match: A0A067L586 (Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_02450 PE=3 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 1.7e-07
Identity = 25/49 (51.02%), Postives = 33/49 (67.35%), Query Frame = 0


Query: 3  ARGCPLFCMDASYMTCLASDDHRLSPPCYCCFASNGCTISLSNGITIRC 52
          A  CPL+C+D  YMTC +S + +LSP C CC A   CT+ LS+G +I C
Sbjct: 24 AEACPLYCLDVEYMTCESSGEEKLSPRCNCCLAPKNCTLHLSDGTSIFC 72

[Close]

BLAST of MS015456 vs. ExPASy TrEMBL
Match: B9S759 (Serine-type endopeptidase inhibitor, putative OS=Ricinus communis OX=3988 GN=RCOM_1334010 PE=3 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 2.2e-07
Identity = 23/48 (47.92%), Postives = 33/48 (68.75%), Query Frame = 0


Query: 4  RGCPLFCMDASYMTCLASDDHRLSPPCYCCFASNGCTISLSNGITIRC 52
          + CPL+C+D  YMTC +S D +L+P C CC A   CT+ LS+G ++ C
Sbjct: 25 KACPLYCLDVEYMTCQSSGDEKLNPSCNCCLAPKNCTLHLSDGTSLFC 72

[Close]

BLAST of MS015456 vs. ExPASy TrEMBL
Match: R0GJB3 (Uncharacterized protein OS=Capsella rubella OX=81985 GN=CARUB_v10021230mg PE=3 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 2.2e-07
Identity = 24/51 (47.06%), Postives = 33/51 (64.71%), Query Frame = 0


Query: 1  RPARGCPLFCMDASYMTCLASDDHRLSPPCYCCFASNGCTISLSNGITIRC 52
          + A+ CPL+C+   YMTCL+S D +L P C CC A   CT+ LS+  +I C
Sbjct: 29 KTAKACPLYCLQVEYMTCLSSGDAKLPPRCNCCLAPKNCTLHLSDSTSIHC 79

[Close]

BLAST of MS015456 vs. ExPASy TrEMBL
Match: A0A6L5BAJ4 (Uncharacterized protein OS=Apium graveolens OX=4045 GN=AG4045_008307 PE=3 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 2.2e-07
Identity = 24/49 (48.98%), Postives = 33/49 (67.35%), Query Frame = 0


Query: 3  ARGCPLFCMDASYMTCLASDDHRLSPPCYCCFASNGCTISLSNGITIRC 52
          A+ CPL+C++  YMTC +S D +L P C CC A  GCT+ LS G ++ C
Sbjct: 24 AKACPLYCLEVDYMTCPSSGDTKLDPKCNCCLAPKGCTLHLSTGTSMFC 72

[Close]

BLAST of MS015456 vs. ExPASy TrEMBL
Match: A0A059BUH3 (Uncharacterized protein OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_F03003 PE=3 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 3.7e-07
Identity = 24/49 (48.98%), Postives = 32/49 (65.31%), Query Frame = 0


Query: 3  ARGCPLFCMDASYMTCLASDDHRLSPPCYCCFASNGCTISLSNGITIRC 52
          A  CPL C+D  YMTC ++ D  LSP C CC A  GCT+ L++G ++ C
Sbjct: 31 AVACPLVCLDVDYMTCPSTGDEHLSPQCNCCLAPKGCTLHLTDGTSVSC 79

[Close]

BLAST of MS015456 vs. TAIR 10
Match: AT1G72060.1 (serine-type endopeptidase inhibitors )

HSP 1 Score: 58.2 bits (139), Expect = 2.3e-09
Identity = 23/51 (45.10%), Postives = 30/51 (58.82%), Query Frame = 0


Query: 1  RPARGCPLFCMDASYMTCLASDDHRLSPPCYCCFASNGCTISLSNGITIRC 52
          + A  CPL+C+   YMTC +S   +L P C CC A   CT+ LS+  TI C
Sbjct: 29 KTAIACPLYCLQVEYMTCPSSGADKLPPRCNCCLAPKNCTLHLSDSTTIHC 79

The following BLAST results are available for this feature:

BLAST of MS015456 vs. NCBI nr


Match Name	E-value	Identity	Description
KAF8025531.1	1.2e-07	51.02	hypothetical protein BT93_F2384 [Corymbia citriodora subsp. variegata]	[more]
KAF7847095.1	1.2e-07	51.02	hypothetical protein BT93_L3368 [Corymbia citriodora subsp. variegata]	[more]
KAF8025551.1	1.2e-07	48.98	hypothetical protein BT93_F2402 [Corymbia citriodora subsp. variegata]	[more]
KAF8025527.1	1.2e-07	48.98	hypothetical protein BT93_F2380 [Corymbia citriodora subsp. variegata]	[more]
KAF8025554.1	2.6e-07	48.98	hypothetical protein BT93_F2405 [Corymbia citriodora subsp. variegata]	[more]

BLAST of MS015456 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MS015456 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A067L586	1.7e-07	51.02	Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_02450 PE=3 SV=1	[more]
B9S759	2.2e-07	47.92	Serine-type endopeptidase inhibitor, putative OS=Ricinus communis OX=3988 GN=RCO...	[more]
R0GJB3	2.2e-07	47.06	Uncharacterized protein OS=Capsella rubella OX=81985 GN=CARUB_v10021230mg PE=3 S...	[more]
A0A6L5BAJ4	2.2e-07	48.98	Uncharacterized protein OS=Apium graveolens OX=4045 GN=AG4045_008307 PE=3 SV=1	[more]
A0A059BUH3	3.7e-07	48.98	Uncharacterized protein OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_F03003 PE=3 SV...	[more]

BLAST of MS015456 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G72060.1	2.3e-09	45.10	serine-type endopeptidase inhibitors	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003465	Proteinase inhibitor I20	PFAM	PF02428	Prot_inhib_II	coord: 6..49 e-value: 4.6E-6 score: 26.9
None	No IPR available	SUPERFAMILY	100897	Plant proteinase inhibitors	coord: 3..51

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS015456.1	MS015456.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0004867	serine-type endopeptidase inhibitor activity