MS015450 (gene) Bitter gourd (TR) v1

Overview


Name	MS015450
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Nicotinate phosphoribosyltransferase
Location	scaffold424: 91634 .. 91884 (+)
RNA-Seq Expression	MS015450
Synteny	MS015450

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

CCATTTGTAAATCTTATCAGTTATGTATCTTTAGTTGCTCCAAATGCCACTATTCATCAACTTGTGGCTAGAGCTATAAAATTCTTCTTGAGTTTGGTCTTCGGCGAGCTCAGGGACCTGATGGTGGAATTAGCAAATTATATTTCAGCTATATTGAAGGGTTTGTTGCAACAAGCAATGTTGCAGCTGGGAGGTTATTTGGCATACCATTTCGTGGAACAGGTTCCCATGTATTTGTTAGCTCACTAATG

mRNA sequence

CCATTTGTAAATCTTATCAGTTATGTATCTTTAGTTGCTCCAAATGCCACTATTCATCAACTTGTGGCTAGCTATAAAATTCTTCTTGAGTTTGGTCTTCGGCGAGCTCAGGGACCTGATGGTGGAATTAGCAAATTATATTTCAGCTATATTGAAGGGTTTGTTGCAACAAGCAATGTTGCAGCTGGGAGGTTATTTGGCATACCATTTCGTGGAACAGGTTCCCATGTATTTGTTAGCTCACTAATG

Coding sequence (CDS)

CCATTTGTAAATCTTATCAGTTATGTATCTTTAGTTGCTCCAAATGCCACTATTCATCAACTTGTGGCTAGCTATAAAATTCTTCTTGAGTTTGGTCTTCGGCGAGCTCAGGGACCTGATGGTGGAATTAGCAAATTATATTTCAGCTATATTGAAGGGTTTGTTGCAACAAGCAATGTTGCAGCTGGGAGGTTATTTGGCATACCATTTCGTGGAACAGGTTCCCATGTATTTGTTAGCTCACTAATG

Protein sequence

PFVNLISYVSLVAPNATIHQLVASYKILLEFGLRRAQGPDGGISKLYFSYIEGFVATSNVAAGRLFGIPFRGTGSHVFVSSLM

Homology

[Close]

BLAST of MS015450 vs. NCBI nr
Match: XP_008457761.1 (PREDICTED: nicotinate phosphoribosyltransferase 2 [Cucumis melo] >KAA0045776.1 nicotinate phosphoribosyltransferase 2 [Cucumis melo var. makuwa])

HSP 1 Score: 117.5 bits (293), Expect = 5.6e-23
Identity = 63/84 (75.00%), Postives = 66/84 (78.57%), Query Frame = 0


Query: 1   PFVNLISYVSLVAPNATIHQLVA-SYKILLEFGLRRAQGPDGGISKLYFSYIEGFVATSN 60
           PFVNLI+Y SLVA NA  H+ VA   KILLEFGLRRAQGPDGGIS   + YI GF ATSN
Sbjct: 150 PFVNLINYASLVATNAARHRFVAGKSKILLEFGLRRAQGPDGGISASKYCYIGGFDATSN 209

Query: 61  VAAGRLFGIPFRGTGSHVFVSSLM 84
           VAAGRLFGIP RGT SH FVSS M
Sbjct: 210 VAAGRLFGIPLRGTHSHAFVSSFM 233

[Close]

BLAST of MS015450 vs. NCBI nr
Match: XP_031736983.1 (nicotinate phosphoribosyltransferase 2 isoform X1 [Cucumis sativus])

HSP 1 Score: 117.5 bits (293), Expect = 5.6e-23
Identity = 63/84 (75.00%), Postives = 66/84 (78.57%), Query Frame = 0


Query: 1   PFVNLISYVSLVAPNATIHQLVA-SYKILLEFGLRRAQGPDGGISKLYFSYIEGFVATSN 60
           PFVNLI+Y SLVA NA  H+ VA   KILLEFGLRRAQGPDGGIS   + YI GF ATSN
Sbjct: 150 PFVNLINYASLVATNAARHRFVAGKSKILLEFGLRRAQGPDGGISASKYCYIGGFDATSN 209

Query: 61  VAAGRLFGIPFRGTGSHVFVSSLM 84
           VAAGRLFGIP RGT SH FVSS M
Sbjct: 210 VAAGRLFGIPLRGTHSHAFVSSFM 233

[Close]

BLAST of MS015450 vs. NCBI nr
Match: XP_022149494.1 (nicotinate phosphoribosyltransferase 2-like [Momordica charantia])

HSP 1 Score: 117.5 bits (293), Expect = 5.6e-23
Identity = 63/84 (75.00%), Postives = 66/84 (78.57%), Query Frame = 0


Query: 1   PFVNLISYVSLVAPNATIHQLVA-SYKILLEFGLRRAQGPDGGISKLYFSYIEGFVATSN 60
           PFVNLI+Y SLVA NA  H+ VA   KILLEFGLRRAQGPDGGIS   + YI GF ATSN
Sbjct: 152 PFVNLINYASLVATNAARHRFVAGKSKILLEFGLRRAQGPDGGISASKYCYIGGFDATSN 211

Query: 61  VAAGRLFGIPFRGTGSHVFVSSLM 84
           VAAGRLFGIP RGT SH FVSS M
Sbjct: 212 VAAGRLFGIPLRGTHSHAFVSSFM 235

[Close]

BLAST of MS015450 vs. NCBI nr
Match: XP_004149696.2 (nicotinate phosphoribosyltransferase 2 isoform X2 [Cucumis sativus] >KGN61978.1 hypothetical protein Csa_005906 [Cucumis sativus])

HSP 1 Score: 117.5 bits (293), Expect = 5.6e-23
Identity = 63/84 (75.00%), Postives = 66/84 (78.57%), Query Frame = 0


Query: 1   PFVNLISYVSLVAPNATIHQLVA-SYKILLEFGLRRAQGPDGGISKLYFSYIEGFVATSN 60
           PFVNLI+Y SLVA NA  H+ VA   KILLEFGLRRAQGPDGGIS   + YI GF ATSN
Sbjct: 150 PFVNLINYASLVATNAARHRFVAGKSKILLEFGLRRAQGPDGGISASKYCYIGGFDATSN 209

Query: 61  VAAGRLFGIPFRGTGSHVFVSSLM 84
           VAAGRLFGIP RGT SH FVSS M
Sbjct: 210 VAAGRLFGIPLRGTHSHAFVSSFM 233

[Close]

BLAST of MS015450 vs. NCBI nr
Match: XP_010263504.1 (PREDICTED: nicotinate phosphoribosyltransferase 2-like [Nelumbo nucifera] >XP_010263505.1 PREDICTED: nicotinate phosphoribosyltransferase 2-like [Nelumbo nucifera])

HSP 1 Score: 117.1 bits (292), Expect = 7.3e-23
Identity = 62/84 (73.81%), Postives = 66/84 (78.57%), Query Frame = 0


Query: 1   PFVNLISYVSLVAPNATIHQLVA-SYKILLEFGLRRAQGPDGGISKLYFSYIEGFVATSN 60
           PFVNLI+Y SLVA NA  H+ VA   K+LLEFGLRRAQGPDGGIS   + YI GF ATSN
Sbjct: 150 PFVNLINYASLVATNAARHRFVAGKSKVLLEFGLRRAQGPDGGISASKYCYIGGFDATSN 209

Query: 61  VAAGRLFGIPFRGTGSHVFVSSLM 84
           VAAGRLFGIP RGT SH FVSS M
Sbjct: 210 VAAGRLFGIPLRGTHSHAFVSSFM 233

[Close]

BLAST of MS015450 vs. ExPASy Swiss-Prot
Match: Q8RWM2 (Nicotinate phosphoribosyltransferase 1 OS=Arabidopsis thaliana OX=3702 GN=NAPRT1 PE=2 SV=1)

HSP 1 Score: 109.4 bits (272), Expect = 2.0e-23
Identity = 57/84 (67.86%), Postives = 64/84 (76.19%), Query Frame = 0


Query: 1   PFVNLISYVSLVAPNATIHQLVA-SYKILLEFGLRRAQGPDGGISKLYFSYIEGFVATSN 60
           PF+NLI+Y SLVA NA  H+ VA   K+LLEFG RRAQGPDG IS   + Y+ GF ATSN
Sbjct: 148 PFLNLINYASLVATNAARHRFVAGKSKLLLEFGARRAQGPDGAISASKYCYLGGFDATSN 207

Query: 61  VAAGRLFGIPFRGTGSHVFVSSLM 84
           VAAG+LFGIP RGT SH FVSS M
Sbjct: 208 VAAGKLFGIPLRGTHSHAFVSSFM 231

[Close]

BLAST of MS015450 vs. ExPASy Swiss-Prot
Match: Q84WV8 (Nicotinate phosphoribosyltransferase 2 OS=Arabidopsis thaliana OX=3702 GN=NAPRT2 PE=2 SV=1)

HSP 1 Score: 104.8 bits (260), Expect = 4.9e-22
Identity = 54/84 (64.29%), Postives = 63/84 (75.00%), Query Frame = 0


Query: 1   PFVNLISYVSLVAPNATIHQLVA-SYKILLEFGLRRAQGPDGGISKLYFSYIEGFVATSN 60
           PF+NL+++ SLVA NA  H+ VA   K LLEFG RRAQGPDG IS   + Y+ GF ATSN
Sbjct: 146 PFLNLVNFASLVATNAARHRFVAGKSKSLLEFGARRAQGPDGAISASKYCYLGGFDATSN 205

Query: 61  VAAGRLFGIPFRGTGSHVFVSSLM 84
           VAAG+LFGIP RGT SH +VSS M
Sbjct: 206 VAAGKLFGIPLRGTHSHAYVSSFM 229

[Close]

BLAST of MS015450 vs. ExPASy Swiss-Prot
Match: Q95XX1 (Nicotinate phosphoribosyltransferase OS=Caenorhabditis elegans OX=6239 GN=nprt-1 PE=3 SV=3)

HSP 1 Score: 89.7 bits (221), Expect = 1.6e-17
Identity = 45/80 (56.25%), Postives = 60/80 (75.00%), Query Frame = 0


Query: 3   VNLISYVSLVAPNATIHQLVASYKI-LLEFGLRRAQGPDGGISKLYFSYIEGFVATSNVA 62
           +NL++Y SLVA NA   +  + +KI LLEFGLRRAQGP+GG++   + YI GF ATSNV 
Sbjct: 154 LNLVNYASLVATNAARFRQASGWKIQLLEFGLRRAQGPNGGLTASKYCYIGGFDATSNVL 213

Query: 63  AGRLFGIPFRGTGSHVFVSS 82
           AG+L+GIP +GT +H F+ S
Sbjct: 214 AGKLYGIPVKGTQAHSFICS 233

[Close]

BLAST of MS015450 vs. ExPASy Swiss-Prot
Match: Q9VQX4 (Nicotinate phosphoribosyltransferase OS=Drosophila melanogaster OX=7227 GN=Naprt PE=2 SV=2)

HSP 1 Score: 88.2 bits (217), Expect = 4.8e-17
Identity = 43/80 (53.75%), Postives = 59/80 (73.75%), Query Frame = 0


Query: 3   VNLISYVSLVAPNATIHQLVASYKI-LLEFGLRRAQGPDGGISKLYFSYIEGFVATSNVA 62
           + L++Y SL+A NA  +++VA   + LLEFGLRRAQGPDGG+S   +SY  GF  TSNV 
Sbjct: 151 LTLVNYASLMATNAARYRMVAGKHVKLLEFGLRRAQGPDGGLSASKYSYTGGFDGTSNVL 210

Query: 63  AGRLFGIPFRGTGSHVFVSS 82
           AG+LF IP +GT +H +++S
Sbjct: 211 AGKLFNIPVKGTHAHAYITS 230

[Close]

BLAST of MS015450 vs. ExPASy Swiss-Prot
Match: A5PK51 (Nicotinate phosphoribosyltransferase OS=Bos taurus OX=9913 GN=NAPRT PE=2 SV=2)

HSP 1 Score: 84.3 bits (207), Expect = 6.9e-16
Identity = 45/82 (54.88%), Postives = 59/82 (71.95%), Query Frame = 0


Query: 1   PFVNLISYVSLVAPNATIHQLVAS-YKILLEFGLRRAQGPDGGISKLYFSYIEGFVATSN 60
           P + L+SY SL+A NA   +L+A   K LLE GLRRAQGPDGG++   +SY+ GF A+SN
Sbjct: 137 PLLCLVSYASLIATNAARLRLIAGPDKRLLEMGLRRAQGPDGGLTASTYSYLGGFDASSN 196

Query: 61  VAAGRLFGIPFRGTGSHVFVSS 82
           V AG+L G+P  GT +H FV+S
Sbjct: 197 VLAGQLRGVPVAGTLAHSFVTS 218

[Close]

BLAST of MS015450 vs. ExPASy TrEMBL
Match: A0A5A7TUG1 (Nicotinate phosphoribosyltransferase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold243G002970 PE=3 SV=1)

HSP 1 Score: 117.5 bits (293), Expect = 2.7e-23
Identity = 63/84 (75.00%), Postives = 66/84 (78.57%), Query Frame = 0


Query: 1   PFVNLISYVSLVAPNATIHQLVA-SYKILLEFGLRRAQGPDGGISKLYFSYIEGFVATSN 60
           PFVNLI+Y SLVA NA  H+ VA   KILLEFGLRRAQGPDGGIS   + YI GF ATSN
Sbjct: 150 PFVNLINYASLVATNAARHRFVAGKSKILLEFGLRRAQGPDGGISASKYCYIGGFDATSN 209

Query: 61  VAAGRLFGIPFRGTGSHVFVSSLM 84
           VAAGRLFGIP RGT SH FVSS M
Sbjct: 210 VAAGRLFGIPLRGTHSHAFVSSFM 233

[Close]

BLAST of MS015450 vs. ExPASy TrEMBL
Match: A0A0A0LJM4 (Nicotinate phosphoribosyltransferase OS=Cucumis sativus OX=3659 GN=Csa_2G279170 PE=3 SV=1)

HSP 1 Score: 117.5 bits (293), Expect = 2.7e-23
Identity = 63/84 (75.00%), Postives = 66/84 (78.57%), Query Frame = 0


Query: 1   PFVNLISYVSLVAPNATIHQLVA-SYKILLEFGLRRAQGPDGGISKLYFSYIEGFVATSN 60
           PFVNLI+Y SLVA NA  H+ VA   KILLEFGLRRAQGPDGGIS   + YI GF ATSN
Sbjct: 150 PFVNLINYASLVATNAARHRFVAGKSKILLEFGLRRAQGPDGGISASKYCYIGGFDATSN 209

Query: 61  VAAGRLFGIPFRGTGSHVFVSSLM 84
           VAAGRLFGIP RGT SH FVSS M
Sbjct: 210 VAAGRLFGIPLRGTHSHAFVSSFM 233

[Close]

BLAST of MS015450 vs. ExPASy TrEMBL
Match: A0A6J1D773 (Nicotinate phosphoribosyltransferase OS=Momordica charantia OX=3673 GN=LOC111017912 PE=3 SV=1)

HSP 1 Score: 117.5 bits (293), Expect = 2.7e-23
Identity = 63/84 (75.00%), Postives = 66/84 (78.57%), Query Frame = 0


Query: 1   PFVNLISYVSLVAPNATIHQLVA-SYKILLEFGLRRAQGPDGGISKLYFSYIEGFVATSN 60
           PFVNLI+Y SLVA NA  H+ VA   KILLEFGLRRAQGPDGGIS   + YI GF ATSN
Sbjct: 152 PFVNLINYASLVATNAARHRFVAGKSKILLEFGLRRAQGPDGGISASKYCYIGGFDATSN 211

Query: 61  VAAGRLFGIPFRGTGSHVFVSSLM 84
           VAAGRLFGIP RGT SH FVSS M
Sbjct: 212 VAAGRLFGIPLRGTHSHAFVSSFM 235

[Close]

BLAST of MS015450 vs. ExPASy TrEMBL
Match: A0A1S3C5U4 (Nicotinate phosphoribosyltransferase OS=Cucumis melo OX=3656 GN=LOC103497376 PE=3 SV=1)

HSP 1 Score: 117.5 bits (293), Expect = 2.7e-23
Identity = 63/84 (75.00%), Postives = 66/84 (78.57%), Query Frame = 0


Query: 1   PFVNLISYVSLVAPNATIHQLVA-SYKILLEFGLRRAQGPDGGISKLYFSYIEGFVATSN 60
           PFVNLI+Y SLVA NA  H+ VA   KILLEFGLRRAQGPDGGIS   + YI GF ATSN
Sbjct: 150 PFVNLINYASLVATNAARHRFVAGKSKILLEFGLRRAQGPDGGISASKYCYIGGFDATSN 209

Query: 61  VAAGRLFGIPFRGTGSHVFVSSLM 84
           VAAGRLFGIP RGT SH FVSS M
Sbjct: 210 VAAGRLFGIPLRGTHSHAFVSSFM 233

[Close]

BLAST of MS015450 vs. ExPASy TrEMBL
Match: A0A1U8A9V6 (Nicotinate phosphoribosyltransferase OS=Nelumbo nucifera OX=4432 GN=LOC104601745 PE=3 SV=1)

HSP 1 Score: 117.1 bits (292), Expect = 3.5e-23
Identity = 62/84 (73.81%), Postives = 66/84 (78.57%), Query Frame = 0


Query: 1   PFVNLISYVSLVAPNATIHQLVA-SYKILLEFGLRRAQGPDGGISKLYFSYIEGFVATSN 60
           PFVNLI+Y SLVA NA  H+ VA   K+LLEFGLRRAQGPDGGIS   + YI GF ATSN
Sbjct: 150 PFVNLINYASLVATNAARHRFVAGKSKVLLEFGLRRAQGPDGGISASKYCYIGGFDATSN 209

Query: 61  VAAGRLFGIPFRGTGSHVFVSSLM 84
           VAAGRLFGIP RGT SH FVSS M
Sbjct: 210 VAAGRLFGIPLRGTHSHAFVSSFM 233

[Close]

BLAST of MS015450 vs. TAIR 10
Match: AT4G36940.1 (nicotinate phosphoribosyltransferase 1 )

HSP 1 Score: 109.4 bits (272), Expect = 1.4e-24
Identity = 57/84 (67.86%), Postives = 64/84 (76.19%), Query Frame = 0


Query: 1   PFVNLISYVSLVAPNATIHQLVA-SYKILLEFGLRRAQGPDGGISKLYFSYIEGFVATSN 60
           PF+NLI+Y SLVA NA  H+ VA   K+LLEFG RRAQGPDG IS   + Y+ GF ATSN
Sbjct: 148 PFLNLINYASLVATNAARHRFVAGKSKLLLEFGARRAQGPDGAISASKYCYLGGFDATSN 207

Query: 61  VAAGRLFGIPFRGTGSHVFVSSLM 84
           VAAG+LFGIP RGT SH FVSS M
Sbjct: 208 VAAGKLFGIPLRGTHSHAFVSSFM 231

[Close]

BLAST of MS015450 vs. TAIR 10
Match: AT2G23420.1 (nicotinate phosphoribosyltransferase 2 )

HSP 1 Score: 104.8 bits (260), Expect = 3.5e-23
Identity = 54/84 (64.29%), Postives = 63/84 (75.00%), Query Frame = 0


Query: 1   PFVNLISYVSLVAPNATIHQLVA-SYKILLEFGLRRAQGPDGGISKLYFSYIEGFVATSN 60
           PF+NL+++ SLVA NA  H+ VA   K LLEFG RRAQGPDG IS   + Y+ GF ATSN
Sbjct: 146 PFLNLVNFASLVATNAARHRFVAGKSKSLLEFGARRAQGPDGAISASKYCYLGGFDATSN 205

Query: 61  VAAGRLFGIPFRGTGSHVFVSSLM 84
           VAAG+LFGIP RGT SH +VSS M
Sbjct: 206 VAAGKLFGIPLRGTHSHAYVSSFM 229

The following BLAST results are available for this feature:

BLAST of MS015450 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008457761.1	5.6e-23	75.00	PREDICTED: nicotinate phosphoribosyltransferase 2 [Cucumis melo] >KAA0045776.1 n...	[more]
XP_031736983.1	5.6e-23	75.00	nicotinate phosphoribosyltransferase 2 isoform X1 [Cucumis sativus]	[more]
XP_022149494.1	5.6e-23	75.00	nicotinate phosphoribosyltransferase 2-like [Momordica charantia]	[more]
XP_004149696.2	5.6e-23	75.00	nicotinate phosphoribosyltransferase 2 isoform X2 [Cucumis sativus] >KGN61978.1 ...	[more]
XP_010263504.1	7.3e-23	73.81	PREDICTED: nicotinate phosphoribosyltransferase 2-like [Nelumbo nucifera] >XP_01...	[more]

BLAST of MS015450 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8RWM2	2.0e-23	67.86	Nicotinate phosphoribosyltransferase 1 OS=Arabidopsis thaliana OX=3702 GN=NAPRT1...	[more]
Q84WV8	4.9e-22	64.29	Nicotinate phosphoribosyltransferase 2 OS=Arabidopsis thaliana OX=3702 GN=NAPRT2...	[more]
Q95XX1	1.6e-17	56.25	Nicotinate phosphoribosyltransferase OS=Caenorhabditis elegans OX=6239 GN=nprt-1...	[more]
Q9VQX4	4.8e-17	53.75	Nicotinate phosphoribosyltransferase OS=Drosophila melanogaster OX=7227 GN=Naprt...	[more]
A5PK51	6.9e-16	54.88	Nicotinate phosphoribosyltransferase OS=Bos taurus OX=9913 GN=NAPRT PE=2 SV=2	[more]

BLAST of MS015450 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TUG1	2.7e-23	75.00	Nicotinate phosphoribosyltransferase OS=Cucumis melo var. makuwa OX=1194695 GN=E...	[more]
A0A0A0LJM4	2.7e-23	75.00	Nicotinate phosphoribosyltransferase OS=Cucumis sativus OX=3659 GN=Csa_2G279170 ...	[more]
A0A6J1D773	2.7e-23	75.00	Nicotinate phosphoribosyltransferase OS=Momordica charantia OX=3673 GN=LOC111017...	[more]
A0A1S3C5U4	2.7e-23	75.00	Nicotinate phosphoribosyltransferase OS=Cucumis melo OX=3656 GN=LOC103497376 PE=...	[more]
A0A1U8A9V6	3.5e-23	73.81	Nicotinate phosphoribosyltransferase OS=Nelumbo nucifera OX=4432 GN=LOC104601745...	[more]

BLAST of MS015450 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G36940.1	1.4e-24	67.86	nicotinate phosphoribosyltransferase 1	[more]
AT2G23420.1	3.5e-23	64.29	nicotinate phosphoribosyltransferase 2	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013785	Aldolase-type TIM barrel	GENE3D	3.20.20.70	Aldolase class I	coord: 25..83 e-value: 1.5E-16 score: 63.0
None	No IPR available	PANTHER	PTHR11098:SF25	NICOTINATE PHOSPHORIBOSYLTRANSFERASE	coord: 1..83
IPR007229	Nicotinate phosphoribosyltransferase family	PANTHER	PTHR11098	NICOTINATE PHOSPHORIBOSYLTRANSFERASE	coord: 1..83
IPR036068	Nicotinate phosphoribosyltransferase-like, C-terminal	SUPERFAMILY	51690	Nicotinate/Quinolinate PRTase C-terminal domain-like	coord: 12..80

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS015450.1	MS015450.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009435	NAD biosynthetic process
molecular_function	GO:0003824	catalytic activity
molecular_function	GO:0004514	nicotinate-nucleotide diphosphorylase (carboxylating) activity