MS015344 (gene) Bitter gourd (TR) v1

Overview
NameMS015344
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionUnknown protein
Locationscaffold2: 2737074 .. 2737257 (-)
RNA-Seq ExpressionMS015344
SyntenyMS015344
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
CATGATTTCCGTCTCCGCAATGGTGATCCAATGCATGCGCCTATTTGGGGCGACCCCATCCGCCTATTGTCTTCTTCTTTGAGTTTCGCCTATTTTCTATCGTCTCGACTTTCGGAATTGGCCTGACCCTTGAAGGTCCTACGATAACTCAAAACAAACTCTCACAATAAAGCTAGGGTTTGTG

mRNA sequence

CATGATTTCCGTCTCCGCAATGGTGATCCAATGCATGCGCCTATTTGGCGACCCCATCCGCCTATTGTCTTCTTCTTTGAGTTTCGCCTATTTTCTATCGTCTCGACTTTCGGAATTGGCCTGACCCTTGAAGGTCCTACGATATCAAAACAAACTCTCACAATAAAGCTAGGGTTTGTG

Coding sequence (CDS)

CATGATTTCCGTCTCCGCAATGGTGATCCAATGCATGCGCCTATTTGGCGACCCCATCCGCCTATTGTCTTCTTCTTTGAGTTTCGCCTATTTTCTATCGTCTCGACTTTCGGAATTGGCCTGACCCTTGAAGGTCCTACGATATCAAAACAAACTCTCACAATAAAGCTAGGGTTTGTG

Protein sequence

HDFRLRNGDPMHAPIWRPHPPIVFFFEFRLFSIVSTFGIGLTLEGPTISKQTLTIKLGFV
Homology
BLAST of MS015344 vs. NCBI nr
Match: VVA33529.1 (PREDICTED: IST1 [Prunus dulcis])

HSP 1 Score: 94.4 bits (233), Expect = 3.7e-16
Identity = 44/49 (89.80%), Postives = 45/49 (91.84%), Query Frame = 0

Query: 1   HDFRLRNGDPMHAPIW--RPHPPIVFFFEFRLFSIVSTFGIGLTLEGPT 48
           HDFRLRNGDPMHAPIW  RPH PIVFFFEFRLFSIVS FGIGLTL+GPT
Sbjct: 145 HDFRLRNGDPMHAPIWVSRPHLPIVFFFEFRLFSIVSFFGIGLTLDGPT 193

BLAST of MS015344 vs. NCBI nr
Match: WP_131796640.1 (DUF4283 domain-containing protein [Candidatus Frankia datiscae])

HSP 1 Score: 93.2 bits (230), Expect = 8.2e-16
Identity = 44/49 (89.80%), Postives = 44/49 (89.80%), Query Frame = 0

Query: 1  HDFRLRNGDPMHAPIW--RPHPPIVFFFEFRLFSIVSTFGIGLTLEGPT 48
          HDFRLRNGDPMHAPIW  RPH P VFFFEF LFSIVSTFGIGLTLEGPT
Sbjct: 14 HDFRLRNGDPMHAPIWVSRPHLPRVFFFEFSLFSIVSTFGIGLTLEGPT 62

BLAST of MS015344 vs. ExPASy TrEMBL
Match: A0A5E4G1B8 (PREDICTED: IST1 OS=Prunus dulcis OX=3755 GN=ALMOND_2B000361 PE=3 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 1.8e-16
Identity = 44/49 (89.80%), Postives = 45/49 (91.84%), Query Frame = 0

Query: 1   HDFRLRNGDPMHAPIW--RPHPPIVFFFEFRLFSIVSTFGIGLTLEGPT 48
           HDFRLRNGDPMHAPIW  RPH PIVFFFEFRLFSIVS FGIGLTL+GPT
Sbjct: 145 HDFRLRNGDPMHAPIWVSRPHLPIVFFFEFRLFSIVSFFGIGLTLDGPT 193

BLAST of MS015344 vs. ExPASy TrEMBL
Match: A0A5A7UWF6 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold48829G00010 PE=4 SV=1)

HSP 1 Score: 52.4 bits (124), Expect = 7.7e-04
Identity = 30/44 (68.18%), Postives = 32/44 (72.73%), Query Frame = 0

Query: 17  RPHPPIVFFFEFRLFSIVSTFGIGLTLEGPT--ISKQTLTIKLG 59
           R HPPIVFFF    F  VSTFGIGLTLEGPT  +S+  L IKLG
Sbjct: 121 RLHPPIVFFF----FFAVSTFGIGLTLEGPTKLVSRPPLRIKLG 160

BLAST of MS015344 vs. ExPASy TrEMBL
Match: A0A5D3BZC3 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold84043G00010 PE=4 SV=1)

HSP 1 Score: 52.4 bits (124), Expect = 7.7e-04
Identity = 30/44 (68.18%), Postives = 32/44 (72.73%), Query Frame = 0

Query: 17  RPHPPIVFFFEFRLFSIVSTFGIGLTLEGPT--ISKQTLTIKLG 59
           R HPPIVFFF    F  VSTFGIGLTLEGPT  +S+  L IKLG
Sbjct: 191 RLHPPIVFFF----FFAVSTFGIGLTLEGPTKLVSRPPLRIKLG 230

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
VVA33529.13.7e-1689.80PREDICTED: IST1 [Prunus dulcis][more]
WP_131796640.18.2e-1689.80DUF4283 domain-containing protein [Candidatus Frankia datiscae][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5E4G1B81.8e-1689.80PREDICTED: IST1 OS=Prunus dulcis OX=3755 GN=ALMOND_2B000361 PE=3 SV=1[more]
A0A5A7UWF67.7e-0468.18Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5D3BZC37.7e-0468.18Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS015344.1MS015344.1mRNA