MS015271 (gene) Bitter gourd (TR) v1

Overview
NameMS015271
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionUnknown protein
Locationscaffold2: 2184483 .. 2184881 (+)
RNA-Seq ExpressionMS015271
SyntenyMS015271
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGAACACTGGAGATATCAAAATGACTCCAGAAACTTCTTTTGCCCAGCATTTCCATGTCCTTCATAAGACATGTTCGAGCTTGGACATTTCAACCAATATCCTGCACTGTATACTGTGCTTCTCCTTCAAAACAGTCACTCTCATTCTCTTGTTTCCTTTTGAGCAAGTGAATGGGAATCCTGTGCCTACTATAATCTTCAAGGGCCATCCTTCAACATTTCATGCCTTTCTAATTTCAGTTGTGATGGCATTCTCAGGTGCGTTTAACGCCTTGATGCTTGCTACTAATAAGCCAAAAATCGCAAAGTTTTGCAGCCACTATTCCATGGTGTTTATGGCCTCAGCTGTAGTTTTATTGATATGGGCTGTGTTGCAGACAGTTTTAACCTGGATG

mRNA sequence

ATGAAGAACACTGGAGATATCAAAATGACTCCAGAAACTTCTTTTGCCCAGCATTTCCATGTCCTTCATAAGACATGTTCGAGCTTGGACATTTCAACCAATATCCTGCACTGTATACTGTGCTTCTCCTTCAAAACAGTCACTCTCATTCTCTTGTTTCCTTTTGAGCAAGTGAATGGGAATCCTGTGCCTACTATAATCTTCAAGGGCCATCCTTCAACATTTCATGCCTTTCTAATTTCAGTTGTGATGGCATTCTCAGGTGCGTTTAACGCCTTGATGCTTGCTACTAATAAGCCAAAAATCGCAAAGTTTTGCAGCCACTATTCCATGGTGTTTATGGCCTCAGCTGTAGTTTTATTGATATGGGCTGTGTTGCAGACAGTTTTAACCTGGATG

Coding sequence (CDS)

ATGAAGAACACTGGAGATATCAAAATGACTCCAGAAACTTCTTTTGCCCAGCATTTCCATGTCCTTCATAAGACATGTTCGAGCTTGGACATTTCAACCAATATCCTGCACTGTATACTGTGCTTCTCCTTCAAAACAGTCACTCTCATTCTCTTGTTTCCTTTTGAGCAAGTGAATGGGAATCCTGTGCCTACTATAATCTTCAAGGGCCATCCTTCAACATTTCATGCCTTTCTAATTTCAGTTGTGATGGCATTCTCAGGTGCGTTTAACGCCTTGATGCTTGCTACTAATAAGCCAAAAATCGCAAAGTTTTGCAGCCACTATTCCATGGTGTTTATGGCCTCAGCTGTAGTTTTATTGATATGGGCTGTGTTGCAGACAGTTTTAACCTGGATG

Protein sequence

MKNTGDIKMTPETSFAQHFHVLHKTCSSLDISTNILHCILCFSFKTVTLILLFPFEQVNGNPVPTIIFKGHPSTFHAFLISVVMAFSGAFNALMLATNKPKIAKFCSHYSMVFMASAVVLLIWAVLQTVLTWM
Homology
BLAST of MS015271 vs. NCBI nr
Match: XP_022992466.1 (uncharacterized protein LOC111488762 [Cucurbita maxima])

HSP 1 Score: 212.6 bits (540), Expect = 2.0e-51
Identity = 106/129 (82.17%), Postives = 116/129 (89.92%), Query Frame = 0

Query: 1   MKNTGDIKMTPETSFAQHFHVLHKTCSSLDISTNILHCILCFSFKTVTLILLFPFEQVNG 60
           MKN G I M+PETSF QHFH+L K CS LDISTN+++CILC SFKTVTLILLFP+EQVNG
Sbjct: 39  MKNAGAINMSPETSFPQHFHILGKACSRLDISTNLMYCILCCSFKTVTLILLFPYEQVNG 98

Query: 61  NPVPTIIFKGHPSTFHAFLISVVMAFSGAFNALMLATNKPKIAKFCSHYSMVFMASAVVL 120
           NPVPTIIFKG PSTFHAFL+S VMAFSGAFNALML+ NKPKIA+FCS+YSM FMASAVVL
Sbjct: 99  NPVPTIIFKGLPSTFHAFLLSTVMAFSGAFNALMLSANKPKIARFCSYYSMAFMASAVVL 158

Query: 121 LIWAVLQTV 130
           LIWAV QTV
Sbjct: 159 LIWAVYQTV 167

BLAST of MS015271 vs. NCBI nr
Match: KAG6601352.1 (hypothetical protein SDJN03_06585, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 212.2 bits (539), Expect = 2.7e-51
Identity = 105/129 (81.40%), Postives = 116/129 (89.92%), Query Frame = 0

Query: 1   MKNTGDIKMTPETSFAQHFHVLHKTCSSLDISTNILHCILCFSFKTVTLILLFPFEQVNG 60
           MKN G I M+PETSF QHFH+L K CS LDISTN+++CILC SFKTVTLILLFP+EQVNG
Sbjct: 1   MKNAGAINMSPETSFPQHFHILGKACSRLDISTNLMYCILCCSFKTVTLILLFPYEQVNG 60

Query: 61  NPVPTIIFKGHPSTFHAFLISVVMAFSGAFNALMLATNKPKIAKFCSHYSMVFMASAVVL 120
           NPVPT+IFKG PSTFHAFL+S VMAFSGAFNALML+ NKPKIA+FCS+YSM FMASAVVL
Sbjct: 61  NPVPTVIFKGLPSTFHAFLLSTVMAFSGAFNALMLSANKPKIARFCSYYSMAFMASAVVL 120

Query: 121 LIWAVLQTV 130
           LIWAV QTV
Sbjct: 121 LIWAVYQTV 129

BLAST of MS015271 vs. NCBI nr
Match: KAE8648779.1 (hypothetical protein Csa_009128 [Cucumis sativus])

HSP 1 Score: 131.0 bits (328), Expect = 7.8e-27
Identity = 74/129 (57.36%), Postives = 81/129 (62.79%), Query Frame = 0

Query: 1   MKNTGDIKMTPETSFAQHFHVLHKTCSSLDISTNILHCILCFSFKTVTLILLFPFEQVNG 60
           MKN  DI  +P+T FAQHFH+L                                   VNG
Sbjct: 10  MKNRRDINKSPDTCFAQHFHIL-----------------------------------VNG 69

Query: 61  NPVPTIIFKGHPSTFHAFLISVVMAFSGAFNALMLATNKPKIAKFCSHYSMVFMASAVVL 120
           N VP IIFKG PSTFHAFL+S+VMAFSGAFNALMLATNKPKIAKFCS+YS+ FM SAVVL
Sbjct: 70  NLVPAIIFKGLPSTFHAFLLSIVMAFSGAFNALMLATNKPKIAKFCSYYSLGFMVSAVVL 103

Query: 121 LIWAVLQTV 130
             WAV QTV
Sbjct: 130 FFWAVFQTV 103

BLAST of MS015271 vs. NCBI nr
Match: EOY01535.1 (Uncharacterized protein TCM_011399 [Theobroma cacao])

HSP 1 Score: 107.5 bits (267), Expect = 9.3e-20
Identity = 58/112 (51.79%), Postives = 73/112 (65.18%), Query Frame = 0

Query: 14  SFAQHFHVLHKTCSSLDISTNILHCILCFSFKTVTLILLFPFEQVNGNPVPTIIFKGHPS 73
           +F  H     +  SS+ + T IL  IL  SF   T+++L P E V G+PVP I+FKGHP+
Sbjct: 14  TFYPHHVSFSEMLSSIAVQTTILESILFISFTVATILILLPHEYVKGSPVPIIVFKGHPA 73

Query: 74  TFHAFLISVVMAFSGAFNALMLATNKPKIAKFCSHYSMVFMASAVVLLIWAV 126
           TFHAF I ++ AFSGAF ALM   N P+IA  C  YS+  MASA+ LLIWAV
Sbjct: 74  TFHAFTICIIFAFSGAFCALM-TPNSPRIASLCGCYSIASMASAIGLLIWAV 124

BLAST of MS015271 vs. NCBI nr
Match: KYP48304.1 (hypothetical protein KK1_029996 [Cajanus cajan])

HSP 1 Score: 102.4 bits (254), Expect = 3.0e-18
Identity = 49/97 (50.52%), Postives = 70/97 (72.16%), Query Frame = 0

Query: 35  ILHCILCFSFKTVTLILLFPFEQVNGNPVPTIIFKGHPSTFHAFLISVVMAFSGAFNALM 94
           +L C+L   F  +T++L  P+E ++ NPVPT+IFKGHP  FHAF+I ++ AFSG+ NAL 
Sbjct: 21  VLECVLGLCFTVITILLQLPYEYIDNNPVPTVIFKGHPRIFHAFIICIIFAFSGSTNAL- 80

Query: 95  LATNKPKIAKFCSHYSMVFMASAVVLLIWAVLQTVLT 132
           +A NK   +KFC +Y+M  MASA+ +L+WAV  T +T
Sbjct: 81  VAFNKSTFSKFCGYYAMASMASAMAILLWAVYCTCIT 116

BLAST of MS015271 vs. ExPASy TrEMBL
Match: A0A6J1JTM5 (uncharacterized protein LOC111488762 OS=Cucurbita maxima OX=3661 GN=LOC111488762 PE=4 SV=1)

HSP 1 Score: 212.6 bits (540), Expect = 9.9e-52
Identity = 106/129 (82.17%), Postives = 116/129 (89.92%), Query Frame = 0

Query: 1   MKNTGDIKMTPETSFAQHFHVLHKTCSSLDISTNILHCILCFSFKTVTLILLFPFEQVNG 60
           MKN G I M+PETSF QHFH+L K CS LDISTN+++CILC SFKTVTLILLFP+EQVNG
Sbjct: 39  MKNAGAINMSPETSFPQHFHILGKACSRLDISTNLMYCILCCSFKTVTLILLFPYEQVNG 98

Query: 61  NPVPTIIFKGHPSTFHAFLISVVMAFSGAFNALMLATNKPKIAKFCSHYSMVFMASAVVL 120
           NPVPTIIFKG PSTFHAFL+S VMAFSGAFNALML+ NKPKIA+FCS+YSM FMASAVVL
Sbjct: 99  NPVPTIIFKGLPSTFHAFLLSTVMAFSGAFNALMLSANKPKIARFCSYYSMAFMASAVVL 158

Query: 121 LIWAVLQTV 130
           LIWAV QTV
Sbjct: 159 LIWAVYQTV 167

BLAST of MS015271 vs. ExPASy TrEMBL
Match: A0A0A0KT20 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G607970 PE=4 SV=1)

HSP 1 Score: 203.4 bits (516), Expect = 6.0e-49
Identity = 103/129 (79.84%), Postives = 113/129 (87.60%), Query Frame = 0

Query: 1   MKNTGDIKMTPETSFAQHFHVLHKTCSSLDISTNILHCILCFSFKTVTLILLFPFEQVNG 60
           MKN  DI  +P+T FAQHFH+L KTCSSLDISTN+L+ ILC SFKTVTLILLFP+EQVNG
Sbjct: 10  MKNRRDINKSPDTCFAQHFHILGKTCSSLDISTNLLYSILCLSFKTVTLILLFPYEQVNG 69

Query: 61  NPVPTIIFKGHPSTFHAFLISVVMAFSGAFNALMLATNKPKIAKFCSHYSMVFMASAVVL 120
           N VP IIFKG PSTFHAFL+S+VMAFSGAFNALMLATNKPKIAKFCS+YS+ FM SAVVL
Sbjct: 70  NLVPAIIFKGLPSTFHAFLLSIVMAFSGAFNALMLATNKPKIAKFCSYYSLGFMVSAVVL 129

Query: 121 LIWAVLQTV 130
             WAV QTV
Sbjct: 130 FFWAVFQTV 138

BLAST of MS015271 vs. ExPASy TrEMBL
Match: A0A061E956 (Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_011399 PE=4 SV=1)

HSP 1 Score: 107.5 bits (267), Expect = 4.5e-20
Identity = 58/112 (51.79%), Postives = 73/112 (65.18%), Query Frame = 0

Query: 14  SFAQHFHVLHKTCSSLDISTNILHCILCFSFKTVTLILLFPFEQVNGNPVPTIIFKGHPS 73
           +F  H     +  SS+ + T IL  IL  SF   T+++L P E V G+PVP I+FKGHP+
Sbjct: 14  TFYPHHVSFSEMLSSIAVQTTILESILFISFTVATILILLPHEYVKGSPVPIIVFKGHPA 73

Query: 74  TFHAFLISVVMAFSGAFNALMLATNKPKIAKFCSHYSMVFMASAVVLLIWAV 126
           TFHAF I ++ AFSGAF ALM   N P+IA  C  YS+  MASA+ LLIWAV
Sbjct: 74  TFHAFTICIIFAFSGAFCALM-TPNSPRIASLCGCYSIASMASAIGLLIWAV 124

BLAST of MS015271 vs. ExPASy TrEMBL
Match: A0A5B7B2W8 (Uncharacterized protein (Fragment) OS=Davidia involucrata OX=16924 GN=Din_032285 PE=4 SV=1)

HSP 1 Score: 104.0 bits (258), Expect = 5.0e-19
Identity = 52/90 (57.78%), Postives = 66/90 (73.33%), Query Frame = 0

Query: 35  ILHCILCFSFKTVTLILLFPFEQVNGNPVPTIIFKGHPSTFHAFLISVVMAFSGAFNALM 94
           IL  IL  SF T  +++  P+E ++GNPVPTIIFKG PS FHAFLI ++ AFSGA+  LM
Sbjct: 41  ILESILFASFTTANILIRLPYENIDGNPVPTIIFKGLPSAFHAFLICIIFAFSGAYCGLM 100

Query: 95  LATNKPKIAKFCSHYSMVFMASAVVLLIWA 125
           +  +KP++A FC + SM  MASAV LLIWA
Sbjct: 101 MIPHKPRLATFCGYCSMASMASAVALLIWA 130

BLAST of MS015271 vs. ExPASy TrEMBL
Match: A0A5B7B649 (Uncharacterized protein (Fragment) OS=Davidia involucrata OX=16924 GN=Din_032284 PE=4 SV=1)

HSP 1 Score: 103.2 bits (256), Expect = 8.5e-19
Identity = 51/90 (56.67%), Postives = 66/90 (73.33%), Query Frame = 0

Query: 35  ILHCILCFSFKTVTLILLFPFEQVNGNPVPTIIFKGHPSTFHAFLISVVMAFSGAFNALM 94
           IL  IL  SF T  +++  P+E ++GNPVPTIIFKG PS FHAFLI ++ AFSGA+  LM
Sbjct: 48  ILESILFASFTTANILIRLPYENIDGNPVPTIIFKGLPSAFHAFLICIIFAFSGAYCGLM 107

Query: 95  LATNKPKIAKFCSHYSMVFMASAVVLLIWA 125
           +  +KP++A FC + SM  MASAV L+IWA
Sbjct: 108 MIPHKPRLATFCGYCSMASMASAVALMIWA 137

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022992466.12.0e-5182.17uncharacterized protein LOC111488762 [Cucurbita maxima][more]
KAG6601352.12.7e-5181.40hypothetical protein SDJN03_06585, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAE8648779.17.8e-2757.36hypothetical protein Csa_009128 [Cucumis sativus][more]
EOY01535.19.3e-2051.79Uncharacterized protein TCM_011399 [Theobroma cacao][more]
KYP48304.13.0e-1850.52hypothetical protein KK1_029996 [Cajanus cajan][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1JTM59.9e-5282.17uncharacterized protein LOC111488762 OS=Cucurbita maxima OX=3661 GN=LOC111488762... [more]
A0A0A0KT206.0e-4979.84Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G607970 PE=4 SV=1[more]
A0A061E9564.5e-2051.79Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_011399 PE=4 SV=1[more]
A0A5B7B2W85.0e-1957.78Uncharacterized protein (Fragment) OS=Davidia involucrata OX=16924 GN=Din_032285... [more]
A0A5B7B6498.5e-1956.67Uncharacterized protein (Fragment) OS=Davidia involucrata OX=16924 GN=Din_032284... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS015271.1MS015271.1mRNA