MS015254 (gene) Bitter gourd (TR) v1

Overview


Name	MS015254
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	NAD(P)H-quinone oxidoreductase subunit H, chloroplastic
Location	scaffold2: 2091339 .. 2091464 (+)
RNA-Seq Expression	MS015254
Synteny	MS015254

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

TTGCTAAGCACTCCTAAATATCATAAACTTATTACACAAAATCCTATTTTTTTAGAACGAGTCGAAGAAATAGGCATTATTTGTGGAGAAGAAGTAATAAATTGGGGATTATCGAGACCCATGGTT

mRNA sequence

TTGCTAAGCACTCCTAAATATCATAAACTTATTACACAAAATCCTATTTTTTTAGAACGAGTCGAAGAAATAGGCATTATTTGTGGAGAAGAAGTAATAAATTGGGGATTATCGAGACCCATGGTT

Coding sequence (CDS)

TTGCTAAGCACTCCTAAATATCATAAACTTATTACACAAAATCCTATTTTTTTAGAACGAGTCGAAGAAATAGGCATTATTTGTGGAGAAGAAGTAATAAATTGGGGATTATCGAGACCCATGGTT

Protein sequence

LLSTPKYHKLITQNPIFLERVEEIGIICGEEVINWGLSRPMV

Homology

[Close]

BLAST of MS015254 vs. NCBI nr
Match: YP_009440035.1 (NADH dehydrogenase subunit 7 [Gynostemma pentagynum] >ATG86830.1 NADH dehydrogenase subunit 7 [Gynostemma pentagynum])

HSP 1 Score: 74.7 bits (182), Expect = 2.1e-10
Identity = 33/42 (78.57%), Postives = 36/42 (85.71%), Query Frame = 0


Query: 1   LLSTPKYHKLITQNPIFLERVEEIGIICGEEVINWGLSRPMV 43
           L    +Y KLITQNPIFLERVEE+GIICGEEVINWGLS PM+
Sbjct: 183 LTGVAEYQKLITQNPIFLERVEEVGIICGEEVINWGLSGPML 224

[Close]

BLAST of MS015254 vs. NCBI nr
Match: YP_009752375.1 (NADH dehydrogenase subunit H [Bryonia marmorata] >QIT04349.1 NADH dehydrogenase subunit H [Bryonia marmorata])

HSP 1 Score: 72.4 bits (176), Expect = 1.0e-09
Identity = 32/42 (76.19%), Postives = 36/42 (85.71%), Query Frame = 0


Query: 1   LLSTPKYHKLITQNPIFLERVEEIGIICGEEVINWGLSRPMV 43
           L +  +Y KLITQNPIFLERVE +GIICGEEVINWGLS PM+
Sbjct: 183 LTAVTEYQKLITQNPIFLERVEGVGIICGEEVINWGLSGPML 224

[Close]

BLAST of MS015254 vs. NCBI nr
Match: YP_009752798.1 (NADH dehydrogenase subunit H [Cyclantheropsis parviflora] >QIT05448.1 NADH dehydrogenase subunit H [Cyclantheropsis parviflora])

HSP 1 Score: 72.4 bits (176), Expect = 1.0e-09
Identity = 32/42 (76.19%), Postives = 35/42 (83.33%), Query Frame = 0


Query: 1   LLSTPKYHKLITQNPIFLERVEEIGIICGEEVINWGLSRPMV 43
           L    +Y KLITQNPIFLERVE +GIICGEEVINWGLS PM+
Sbjct: 183 LTGIAEYQKLITQNPIFLERVERVGIICGEEVINWGLSGPML 224

[Close]

BLAST of MS015254 vs. NCBI nr
Match: YP_009752883.1 (NADH dehydrogenase subunit H [Baijiania yunnanensis] >QIT05955.1 NADH dehydrogenase subunit H [Baijiania yunnanensis])

HSP 1 Score: 72.0 bits (175), Expect = 1.4e-09
Identity = 32/42 (76.19%), Postives = 35/42 (83.33%), Query Frame = 0


Query: 1   LLSTPKYHKLITQNPIFLERVEEIGIICGEEVINWGLSRPMV 43
           L    +Y KLITQNPIFLERVE +GIICGEEVINWGLS PM+
Sbjct: 183 LTGVAEYQKLITQNPIFLERVEGVGIICGEEVINWGLSGPML 224

[Close]

BLAST of MS015254 vs. NCBI nr
Match: YP_009468918.1 (NADH dehydrogenase subunit 7 [Gynostemma compressum] >AVA29834.1 NADH dehydrogenase subunit 7 [Gynostemma compressum])

HSP 1 Score: 72.0 bits (175), Expect = 1.4e-09
Identity = 32/42 (76.19%), Postives = 35/42 (83.33%), Query Frame = 0


Query: 1   LLSTPKYHKLITQNPIFLERVEEIGIICGEEVINWGLSRPMV 43
           L    +Y KLITQNPIFLERVE +GIICGEEVINWGLS PM+
Sbjct: 183 LTGVAEYQKLITQNPIFLERVEGVGIICGEEVINWGLSGPML 224

[Close]

BLAST of MS015254 vs. ExPASy Swiss-Prot
Match: Q4VZL2 (NAD(P)H-quinone oxidoreductase subunit H, chloroplastic OS=Cucumis sativus OX=3659 GN=ndhH PE=3 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 2.0e-11
Identity = 31/42 (73.81%), Postives = 35/42 (83.33%), Query Frame = 0


Query: 1   LLSTPKYHKLITQNPIFLERVEEIGIICGEEVINWGLSRPMV 43
           L +  +Y KLITQNPIFLERVE +GII GEEVINWGLS PM+
Sbjct: 183 LTAVAEYQKLITQNPIFLERVEGVGIISGEEVINWGLSGPML 224

[Close]

BLAST of MS015254 vs. ExPASy Swiss-Prot
Match: A9LYF6 (NAD(P)H-quinone oxidoreductase subunit H, chloroplastic OS=Acorus americanus OX=263995 GN=ndhH PE=3 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 7.5e-11
Identity = 29/37 (78.38%), Postives = 32/37 (86.49%), Query Frame = 0


Query: 6   KYHKLITQNPIFLERVEEIGIICGEEVINWGLSRPMV 43
           +Y KLITQNPIFLERVE +GII GEE INWGLS PM+
Sbjct: 188 EYEKLITQNPIFLERVERVGIISGEEAINWGLSGPML 224

[Close]

BLAST of MS015254 vs. ExPASy Swiss-Prot
Match: Q3V4X8 (NAD(P)H-quinone oxidoreductase subunit H, chloroplastic OS=Acorus calamus OX=4465 GN=ndhH PE=3 SV=2)

HSP 1 Score: 66.6 bits (161), Expect = 7.5e-11
Identity = 29/37 (78.38%), Postives = 32/37 (86.49%), Query Frame = 0


Query: 6   KYHKLITQNPIFLERVEEIGIICGEEVINWGLSRPMV 43
           +Y KLITQNPIFLERVE +GII GEE INWGLS PM+
Sbjct: 188 EYEKLITQNPIFLERVERVGIISGEEAINWGLSGPML 224

[Close]

BLAST of MS015254 vs. ExPASy Swiss-Prot
Match: Q06GU0 (NAD(P)H-quinone oxidoreductase subunit H, chloroplastic OS=Drimys granadensis OX=224735 GN=ndhH PE=3 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 7.5e-11
Identity = 30/42 (71.43%), Postives = 34/42 (80.95%), Query Frame = 0


Query: 1   LLSTPKYHKLITQNPIFLERVEEIGIICGEEVINWGLSRPMV 43
           L    +Y KLIT+NPIFLERVEE+GII GEE INWGLS PM+
Sbjct: 183 LTGVVEYQKLITRNPIFLERVEEVGIIGGEEAINWGLSGPML 224

[Close]

BLAST of MS015254 vs. ExPASy Swiss-Prot
Match: Q06GL1 (NAD(P)H-quinone oxidoreductase subunit H, chloroplastic OS=Piper cenocladum OX=398741 GN=ndhH PE=3 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 1.3e-10
Identity = 31/42 (73.81%), Postives = 33/42 (78.57%), Query Frame = 0


Query: 1   LLSTPKYHKLITQNPIFLERVEEIGIICGEEVINWGLSRPMV 43
           L    +Y KLITQNPIFLERVE IGII GEE INWGLS PM+
Sbjct: 183 LTGVVEYQKLITQNPIFLERVEGIGIIGGEEAINWGLSGPML 224

[Close]

BLAST of MS015254 vs. ExPASy TrEMBL
Match: A0A291IAV5 (NAD(P)H-quinone oxidoreductase subunit H, chloroplastic OS=Gynostemma pentagynum OX=555432 GN=ndhH PE=3 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 1.0e-10
Identity = 33/42 (78.57%), Postives = 36/42 (85.71%), Query Frame = 0


Query: 1   LLSTPKYHKLITQNPIFLERVEEIGIICGEEVINWGLSRPMV 43
           L    +Y KLITQNPIFLERVEE+GIICGEEVINWGLS PM+
Sbjct: 183 LTGVAEYQKLITQNPIFLERVEEVGIICGEEVINWGLSGPML 224

[Close]

BLAST of MS015254 vs. ExPASy TrEMBL
Match: A0A6H0ET07 (NAD(P)H-quinone oxidoreductase subunit H, chloroplastic OS=Cyclantheropsis parviflora OX=387129 GN=ndhH PE=3 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 5.1e-10
Identity = 32/42 (76.19%), Postives = 35/42 (83.33%), Query Frame = 0


Query: 1   LLSTPKYHKLITQNPIFLERVEEIGIICGEEVINWGLSRPMV 43
           L    +Y KLITQNPIFLERVE +GIICGEEVINWGLS PM+
Sbjct: 183 LTGIAEYQKLITQNPIFLERVERVGIICGEEVINWGLSGPML 224

[Close]

BLAST of MS015254 vs. ExPASy TrEMBL
Match: A0A6H0ES32 (NAD(P)H-quinone oxidoreductase subunit H, chloroplastic OS=Bryonia marmorata OX=463179 GN=ndhH PE=3 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 5.1e-10
Identity = 32/42 (76.19%), Postives = 36/42 (85.71%), Query Frame = 0


Query: 1   LLSTPKYHKLITQNPIFLERVEEIGIICGEEVINWGLSRPMV 43
           L +  +Y KLITQNPIFLERVE +GIICGEEVINWGLS PM+
Sbjct: 183 LTAVTEYQKLITQNPIFLERVEGVGIICGEEVINWGLSGPML 224

[Close]

BLAST of MS015254 vs. ExPASy TrEMBL
Match: A0A109WZQ2 (NAD(P)H-quinone oxidoreductase subunit H, chloroplastic OS=Gynostemma pentaphyllum OX=182084 GN=ndhH PE=3 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 6.6e-10
Identity = 32/42 (76.19%), Postives = 35/42 (83.33%), Query Frame = 0


Query: 1   LLSTPKYHKLITQNPIFLERVEEIGIICGEEVINWGLSRPMV 43
           L    +Y KLITQNPIFLERVE +GIICGEEVINWGLS PM+
Sbjct: 183 LTGVAEYQKLITQNPIFLERVEGVGIICGEEVINWGLSGPML 224

[Close]

BLAST of MS015254 vs. ExPASy TrEMBL
Match: A0A6H0ERF6 (NAD(P)H-quinone oxidoreductase subunit H, chloroplastic OS=Indofevillea khasiana OX=383665 GN=ndhH PE=3 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 6.6e-10
Identity = 32/42 (76.19%), Postives = 35/42 (83.33%), Query Frame = 0


Query: 1   LLSTPKYHKLITQNPIFLERVEEIGIICGEEVINWGLSRPMV 43
           L    +Y KLITQNPIFLERVE +GIICGEEVINWGLS PM+
Sbjct: 183 LTGVAEYQKLITQNPIFLERVEGVGIICGEEVINWGLSGPML 224

[Close]

BLAST of MS015254 vs. TAIR 10
Match: ATCG01110.1 (NAD(P)H dehydrogenase subunit H )

HSP 1 Score: 63.9 bits (154), Expect = 3.5e-11
Identity = 29/42 (69.05%), Postives = 33/42 (78.57%), Query Frame = 0


Query: 1   LLSTPKYHKLITQNPIFLERVEEIGIICGEEVINWGLSRPMV 43
           L    +Y KLIT+NPIFLERVE +GII GEE INWGLS PM+
Sbjct: 183 LTEVVEYQKLITRNPIFLERVEGVGIIGGEEAINWGLSGPML 224

The following BLAST results are available for this feature:

BLAST of MS015254 vs. NCBI nr


Match Name	E-value	Identity	Description
YP_009440035.1	2.1e-10	78.57	NADH dehydrogenase subunit 7 [Gynostemma pentagynum] >ATG86830.1 NADH dehydrogen...	[more]
YP_009752375.1	1.0e-09	76.19	NADH dehydrogenase subunit H [Bryonia marmorata] >QIT04349.1 NADH dehydrogenase ...	[more]
YP_009752798.1	1.0e-09	76.19	NADH dehydrogenase subunit H [Cyclantheropsis parviflora] >QIT05448.1 NADH dehyd...	[more]
YP_009752883.1	1.4e-09	76.19	NADH dehydrogenase subunit H [Baijiania yunnanensis] >QIT05955.1 NADH dehydrogen...	[more]
YP_009468918.1	1.4e-09	76.19	NADH dehydrogenase subunit 7 [Gynostemma compressum] >AVA29834.1 NADH dehydrogen...	[more]

BLAST of MS015254 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q4VZL2	2.0e-11	73.81	NAD(P)H-quinone oxidoreductase subunit H, chloroplastic OS=Cucumis sativus OX=36...	[more]
A9LYF6	7.5e-11	78.38	NAD(P)H-quinone oxidoreductase subunit H, chloroplastic OS=Acorus americanus OX=...	[more]
Q3V4X8	7.5e-11	78.38	NAD(P)H-quinone oxidoreductase subunit H, chloroplastic OS=Acorus calamus OX=446...	[more]
Q06GU0	7.5e-11	71.43	NAD(P)H-quinone oxidoreductase subunit H, chloroplastic OS=Drimys granadensis OX...	[more]
Q06GL1	1.3e-10	73.81	NAD(P)H-quinone oxidoreductase subunit H, chloroplastic OS=Piper cenocladum OX=3...	[more]

BLAST of MS015254 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A291IAV5	1.0e-10	78.57	NAD(P)H-quinone oxidoreductase subunit H, chloroplastic OS=Gynostemma pentagynum...	[more]
A0A6H0ET07	5.1e-10	76.19	NAD(P)H-quinone oxidoreductase subunit H, chloroplastic OS=Cyclantheropsis parvi...	[more]
A0A6H0ES32	5.1e-10	76.19	NAD(P)H-quinone oxidoreductase subunit H, chloroplastic OS=Bryonia marmorata OX=...	[more]
A0A109WZQ2	6.6e-10	76.19	NAD(P)H-quinone oxidoreductase subunit H, chloroplastic OS=Gynostemma pentaphyll...	[more]
A0A6H0ERF6	6.6e-10	76.19	NAD(P)H-quinone oxidoreductase subunit H, chloroplastic OS=Indofevillea khasiana...	[more]

BLAST of MS015254 vs. TAIR 10


Match Name	E-value	Identity	Description
ATCG01110.1	3.5e-11	69.05	NAD(P)H dehydrogenase subunit H	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001135	NADH-quinone oxidoreductase, subunit D	PFAM	PF00346	Complex1_49kDa	coord: 5..42 e-value: 1.7E-7 score: 30.6
IPR029014	[NiFe]-hydrogenase, large subunit	GENE3D	1.10.645.10		coord: 3..42 e-value: 4.3E-6 score: 27.7

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS015254.1	MS015254.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0051287	NAD binding
molecular_function	GO:0016651	oxidoreductase activity, acting on NAD(P)H
molecular_function	GO:0048038	quinone binding