MS014573 (gene) Bitter gourd (TR) v1

Overview


Name	MS014573
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Unknown protein
Location	scaffold553: 1009867 .. 1010082 (-)
RNA-Seq Expression	MS014573
Synteny	MS014573

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

TCCTTGGGTATGTGCAAGAGATGTGGTGACCTGAGAATGATAGCATGTTCAAAATGCAGAGGAGTTGGATCAACCAAAGCAGGTGGACTGTTTGGTGTCAACATTCTTGCTGACTTTTACGAATCGTTTGGAAGAGACGAATCGAACCTGCCTTCTATCCCGTGCTCGAGATGCAACGCTAAAGGTCGCTTCAGCTGTCCAGATTGCTGCTCTCAA

mRNA sequence

TCCTTGGGTATGTGCAAGAGATGTGGTGACCTGAGAATGATAGCATGTTCAAAATGCAGAGGAGTTGGATCAACCAAAGCAGGTGGACTGTTTGGTGTCAACATTCTTGCTGACTTTTACGAATCGTTTGGAAGAGACGAATCGAACCTGCCTTCTATCCCGTGCTCGAGATGCAACGCTAAAGGTCGCTTCAGCTGTCCAGATTGCTGCTCTCAA

Coding sequence (CDS)

TCCTTGGGTATGTGCAAGAGATGTGGTGACCTGAGAATGATAGCATGTTCAAAATGCAGAGGAGTTGGATCAACCAAAGCAGGTGGACTGTTTGGTGTCAACATTCTTGCTGACTTTTACGAATCGTTTGGAAGAGACGAATCGAACCTGCCTTCTATCCCGTGCTCGAGATGCAACGCTAAAGGTCGCTTCAGCTGTCCAGATTGCTGCTCTCAA

Protein sequence

SLGMCKRCGDLRMIACSKCRGVGSTKAGGLFGVNILADFYESFGRDESNLPSIPCSRCNAKGRFSCPDCCSQ

Homology

[Close]

BLAST of MS014573 vs. NCBI nr
Match: XP_022155031.1 (uncharacterized protein LOC111022174 [Momordica charantia])

HSP 1 Score: 157.5 bits (397), Expect = 4.2e-35
Identity = 72/72 (100.00%), Postives = 72/72 (100.00%), Query Frame = 0


Query: 1   SLGMCKRCGDLRMIACSKCRGVGSTKAGGLFGVNILADFYESFGRDESNLPSIPCSRCNA 60
           SLGMCKRCGDLRMIACSKCRGVGSTKAGGLFGVNILADFYESFGRDESNLPSIPCSRCNA
Sbjct: 39  SLGMCKRCGDLRMIACSKCRGVGSTKAGGLFGVNILADFYESFGRDESNLPSIPCSRCNA 98

Query: 61  KGRFSCPDCCSQ 73
           KGRFSCPDCCSQ
Sbjct: 99  KGRFSCPDCCSQ 110

[Close]

BLAST of MS014573 vs. NCBI nr
Match: XP_004137138.1 (uncharacterized protein LOC101207960 [Cucumis sativus] >KGN53782.1 hypothetical protein Csa_015216 [Cucumis sativus])

HSP 1 Score: 146.0 bits (367), Expect = 1.3e-31
Identity = 63/72 (87.50%), Postives = 70/72 (97.22%), Query Frame = 0


Query: 1   SLGMCKRCGDLRMIACSKCRGVGSTKAGGLFGVNILADFYESFGRDESNLPSIPCSRCNA 60
           SLGMCKRCGDLRMIACSKC+GVGSTK+GGLFG+NILADFYE+ G+DESN+PSIPC+RCNA
Sbjct: 39  SLGMCKRCGDLRMIACSKCKGVGSTKSGGLFGINILADFYEALGKDESNVPSIPCTRCNA 98

Query: 61  KGRFSCPDCCSQ 73
           KGRF CPDCCSQ
Sbjct: 99  KGRFRCPDCCSQ 110

[Close]

BLAST of MS014573 vs. NCBI nr
Match: XP_038901067.1 (uncharacterized protein LOC120088085 [Benincasa hispida])

HSP 1 Score: 145.6 bits (366), Expect = 1.7e-31
Identity = 64/72 (88.89%), Postives = 69/72 (95.83%), Query Frame = 0


Query: 1   SLGMCKRCGDLRMIACSKCRGVGSTKAGGLFGVNILADFYESFGRDESNLPSIPCSRCNA 60
           SLGMCKRCGDLRMIACSKC+GVGS K+GGLFGVNILA+FYESFG+DESN PSIPC+RCNA
Sbjct: 39  SLGMCKRCGDLRMIACSKCKGVGSIKSGGLFGVNILAEFYESFGKDESNAPSIPCTRCNA 98

Query: 61  KGRFSCPDCCSQ 73
           KGRF CPDCCSQ
Sbjct: 99  KGRFQCPDCCSQ 110

[Close]

BLAST of MS014573 vs. NCBI nr
Match: KAA0045498.1 (uncharacterized protein E6C27_scaffold1202G00430 [Cucumis melo var. makuwa] >TYJ96211.1 uncharacterized protein E5676_scaffold261G00510 [Cucumis melo var. makuwa])

HSP 1 Score: 132.5 bits (332), Expect = 1.5e-27
Identity = 61/72 (84.72%), Postives = 65/72 (90.28%), Query Frame = 0


Query: 1   SLGMCKRCGDLRMIACSKCRGVGSTKAGGLFGVNILADFYESFGRDESNLPSIPCSRCNA 60
           SLGMCKRCGDLRMIACSKC+GVGSTK+GGLFG+NILADFYES    ESN+PSIPC RCNA
Sbjct: 58  SLGMCKRCGDLRMIACSKCKGVGSTKSGGLFGINILADFYESL--SESNVPSIPCMRCNA 117

Query: 61  KGRFSCPDCCSQ 73
           KGRF CPDC SQ
Sbjct: 118 KGRFQCPDCSSQ 127

[Close]

BLAST of MS014573 vs. NCBI nr
Match: XP_008464577.2 (PREDICTED: uncharacterized protein LOC103502417 [Cucumis melo])

HSP 1 Score: 132.5 bits (332), Expect = 1.5e-27
Identity = 61/72 (84.72%), Postives = 65/72 (90.28%), Query Frame = 0


Query: 1   SLGMCKRCGDLRMIACSKCRGVGSTKAGGLFGVNILADFYESFGRDESNLPSIPCSRCNA 60
           SLGMCKRCGDLRMIACSKC+GVGSTK+GGLFG+NILADFYES    ESN+PSIPC RCNA
Sbjct: 39  SLGMCKRCGDLRMIACSKCKGVGSTKSGGLFGINILADFYESL--SESNVPSIPCMRCNA 98

Query: 61  KGRFSCPDCCSQ 73
           KGRF CPDC SQ
Sbjct: 99  KGRFQCPDCSSQ 108

[Close]

BLAST of MS014573 vs. ExPASy TrEMBL
Match: A0A6J1DQH1 (uncharacterized protein LOC111022174 OS=Momordica charantia OX=3673 GN=LOC111022174 PE=4 SV=1)

HSP 1 Score: 157.5 bits (397), Expect = 2.1e-35
Identity = 72/72 (100.00%), Postives = 72/72 (100.00%), Query Frame = 0


Query: 1   SLGMCKRCGDLRMIACSKCRGVGSTKAGGLFGVNILADFYESFGRDESNLPSIPCSRCNA 60
           SLGMCKRCGDLRMIACSKCRGVGSTKAGGLFGVNILADFYESFGRDESNLPSIPCSRCNA
Sbjct: 39  SLGMCKRCGDLRMIACSKCRGVGSTKAGGLFGVNILADFYESFGRDESNLPSIPCSRCNA 98

Query: 61  KGRFSCPDCCSQ 73
           KGRFSCPDCCSQ
Sbjct: 99  KGRFSCPDCCSQ 110

[Close]

BLAST of MS014573 vs. ExPASy TrEMBL
Match: A0A0A0KZH5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G127010 PE=4 SV=1)

HSP 1 Score: 146.0 bits (367), Expect = 6.2e-32
Identity = 63/72 (87.50%), Postives = 70/72 (97.22%), Query Frame = 0


Query: 1   SLGMCKRCGDLRMIACSKCRGVGSTKAGGLFGVNILADFYESFGRDESNLPSIPCSRCNA 60
           SLGMCKRCGDLRMIACSKC+GVGSTK+GGLFG+NILADFYE+ G+DESN+PSIPC+RCNA
Sbjct: 39  SLGMCKRCGDLRMIACSKCKGVGSTKSGGLFGINILADFYEALGKDESNVPSIPCTRCNA 98

Query: 61  KGRFSCPDCCSQ 73
           KGRF CPDCCSQ
Sbjct: 99  KGRFRCPDCCSQ 110

[Close]

BLAST of MS014573 vs. ExPASy TrEMBL
Match: A0A5A7TRM8 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold261G00510 PE=4 SV=1)

HSP 1 Score: 132.5 bits (332), Expect = 7.1e-28
Identity = 61/72 (84.72%), Postives = 65/72 (90.28%), Query Frame = 0


Query: 1   SLGMCKRCGDLRMIACSKCRGVGSTKAGGLFGVNILADFYESFGRDESNLPSIPCSRCNA 60
           SLGMCKRCGDLRMIACSKC+GVGSTK+GGLFG+NILADFYES    ESN+PSIPC RCNA
Sbjct: 58  SLGMCKRCGDLRMIACSKCKGVGSTKSGGLFGINILADFYESL--SESNVPSIPCMRCNA 117

Query: 61  KGRFSCPDCCSQ 73
           KGRF CPDC SQ
Sbjct: 118 KGRFQCPDCSSQ 127

[Close]

BLAST of MS014573 vs. ExPASy TrEMBL
Match: A0A1S3CMA9 (uncharacterized protein LOC103502417 OS=Cucumis melo OX=3656 GN=LOC103502417 PE=4 SV=1)

HSP 1 Score: 132.5 bits (332), Expect = 7.1e-28
Identity = 61/72 (84.72%), Postives = 65/72 (90.28%), Query Frame = 0


Query: 1   SLGMCKRCGDLRMIACSKCRGVGSTKAGGLFGVNILADFYESFGRDESNLPSIPCSRCNA 60
           SLGMCKRCGDLRMIACSKC+GVGSTK+GGLFG+NILADFYES    ESN+PSIPC RCNA
Sbjct: 39  SLGMCKRCGDLRMIACSKCKGVGSTKSGGLFGINILADFYESL--SESNVPSIPCMRCNA 98

Query: 61  KGRFSCPDCCSQ 73
           KGRF CPDC SQ
Sbjct: 99  KGRFQCPDCSSQ 108

[Close]

BLAST of MS014573 vs. ExPASy TrEMBL
Match: A0A6J1J083 (uncharacterized protein LOC111480031 OS=Cucurbita maxima OX=3661 GN=LOC111480031 PE=4 SV=1)

HSP 1 Score: 126.3 bits (316), Expect = 5.1e-26
Identity = 57/72 (79.17%), Postives = 63/72 (87.50%), Query Frame = 0


Query: 1   SLGMCKRCGDLRMIACSKCRGVGSTKAGGLFGVNILADFYESFGRDESNLPSIPCSRCNA 60
           SLGMCKRCGDLRMIACSKC+GVGSTK+GG+F     A+ YESFG+DE N PSIPC+RCNA
Sbjct: 48  SLGMCKRCGDLRMIACSKCKGVGSTKSGGVF-----AELYESFGKDEPNAPSIPCTRCNA 107

Query: 61  KGRFSCPDCCSQ 73
           KGRF CPDCCSQ
Sbjct: 108 KGRFPCPDCCSQ 114

[Close]

BLAST of MS014573 vs. TAIR 10
Match: AT5G15802.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; Has 35 Blast hits to 35 proteins in 15 species: Archae - 0; Bacteria - 4; Metazoa - 0; Fungi - 0; Plants - 31; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 74.7 bits (182), Expect = 3.4e-14
Identity = 32/69 (46.38%), Postives = 43/69 (62.32%), Query Frame = 0


Query: 1  SLGMCKRCGDLRMIACSKCRGVGSTKAGGLFGVNILADFYESFGRDESNLPSIPCSRCNA 60
          SLGMC++CGDL+ +AC +C+G G+ K+GG FG +           D SN  S+ C  C A
Sbjct: 39 SLGMCRKCGDLKNVACGRCKGTGTIKSGGFFGFS-----------DSSNTRSVACDNCQA 96

Query: 61 KGRFSCPDC 70
          KG F CP+C
Sbjct: 99 KGCFPCPEC 96

The following BLAST results are available for this feature:

BLAST of MS014573 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022155031.1	4.2e-35	100.00	uncharacterized protein LOC111022174 [Momordica charantia]	[more]
XP_004137138.1	1.3e-31	87.50	uncharacterized protein LOC101207960 [Cucumis sativus] >KGN53782.1 hypothetical ...	[more]
XP_038901067.1	1.7e-31	88.89	uncharacterized protein LOC120088085 [Benincasa hispida]	[more]
KAA0045498.1	1.5e-27	84.72	uncharacterized protein E6C27_scaffold1202G00430 [Cucumis melo var. makuwa] >TYJ...	[more]
XP_008464577.2	1.5e-27	84.72	PREDICTED: uncharacterized protein LOC103502417 [Cucumis melo]	[more]

BLAST of MS014573 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MS014573 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DQH1	2.1e-35	100.00	uncharacterized protein LOC111022174 OS=Momordica charantia OX=3673 GN=LOC111022...	[more]
A0A0A0KZH5	6.2e-32	87.50	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G127010 PE=4 SV=1	[more]
A0A5A7TRM8	7.1e-28	84.72	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S3CMA9	7.1e-28	84.72	uncharacterized protein LOC103502417 OS=Cucumis melo OX=3656 GN=LOC103502417 PE=...	[more]
A0A6J1J083	5.1e-26	79.17	uncharacterized protein LOC111480031 OS=Cucurbita maxima OX=3661 GN=LOC111480031...	[more]

BLAST of MS014573 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G15802.1	3.4e-14	46.38	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR37760:SF1	CHAPERONE	coord: 1..71
None	No IPR available	PANTHER	PTHR37760	CHAPERONE	coord: 1..71

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS014573.1	MS014573.1	mRNA