MS014541 (gene) Bitter gourd (TR) v1

Overview


Name	MS014541
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	50S ribosomal protein L7/L12
Location	scaffold553: 756599 .. 757177 (-)
RNA-Seq Expression	MS014541
Synteny	MS014541

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGCTAGTTGCTGTTGCCCGATCCCTTCAAGTCCGTTTCACACTTCCTAAAATAATCGGGTCATTTCAGGTCCGCTTCTTCCAGCCTGATTTTGCTCCCAGAGATTCAACAGCCAAGCCAAAAAGATACAAGTATCCACCATTTTATGATCCTTATGGCCCTAGGCCCCCACCCTCTGATAAAATCATTCAGCTTGCTGAAAAAATTGTAGCACTACCTGTCGATGAGCGTTGCCAGATCGGTCCTGCACTCACTGAAAGGCTTAGACATCCTAAGCTGCAGCCAATTTCAGTAGATGGCTTGGACATGGGTTCCGAAGGTGGGGCAGGTGCTGGATCTTCCAAGGTGGAGGAGAAAAAGGAAAAAACTGCTTTCGACGTGAAGCTAGAGAAGTTCGATGCAGCCGCGAAAATTAAGGTGATTAAAGAAGTGAGGTCCTTCACTAATTTGGGTCTGAAGGAGGCAAAAGATTTGGTGGAGAAAGTACCTGCAATTCTTAAGCAAGGGGTGACCAAAGAGGAGGCGAACGACATCATTGAAAAAATCAAAGCTGCTGGAGGAGTTGCAGTCATGGAG

mRNA sequence

ATGAAGCTAGTTGCTGTTGCCCGATCCCTTCAAGTCCGTTTCACACTTCCTAAAATAATCGGGTCATTTCAGGTCCGCTTCTTCCAGCCTGATTTTGCTCCCAGAGATTCAACAGCCAAGCCAAAAAGATACAAGTATCCACCATTTTATGATCCTTATGGCCCTAGGCCCCCACCCTCTGATAAAATCATTCAGCTTGCTGAAAAAATTGTAGCACTACCTGTCGATGAGCGTTGCCAGATCGGTCCTGCACTCACTGAAAGGCTTAGACATCCTAAGCTGCAGCCAATTTCAGTAGATGGCTTGGACATGGGTTCCGAAGGTGGGGCAGGTGCTGGATCTTCCAAGGTGGAGGAGAAAAAGGAAAAAACTGCTTTCGACGTGAAGCTAGAGAAGTTCGATGCAGCCGCGAAAATTAAGGTGATTAAAGAAGTGAGGTCCTTCACTAATTTGGGTCTGAAGGAGGCAAAAGATTTGGTGGAGAAAGTACCTGCAATTCTTAAGCAAGGGGTGACCAAAGAGGAGGCGAACGACATCATTGAAAAAATCAAAGCTGCTGGAGGAGTTGCAGTCATGGAG

Coding sequence (CDS)

ATGAAGCTAGTTGCTGTTGCCCGATCCCTTCAAGTCCGTTTCACACTTCCTAAAATAATCGGGTCATTTCAGGTCCGCTTCTTCCAGCCTGATTTTGCTCCCAGAGATTCAACAGCCAAGCCAAAAAGATACAAGTATCCACCATTTTATGATCCTTATGGCCCTAGGCCCCCACCCTCTGATAAAATCATTCAGCTTGCTGAAAAAATTGTAGCACTACCTGTCGATGAGCGTTGCCAGATCGGTCCTGCACTCACTGAAAGGCTTAGACATCCTAAGCTGCAGCCAATTTCAGTAGATGGCTTGGACATGGGTTCCGAAGGTGGGGCAGGTGCTGGATCTTCCAAGGTGGAGGAGAAAAAGGAAAAAACTGCTTTCGACGTGAAGCTAGAGAAGTTCGATGCAGCCGCGAAAATTAAGGTGATTAAAGAAGTGAGGTCCTTCACTAATTTGGGTCTGAAGGAGGCAAAAGATTTGGTGGAGAAAGTACCTGCAATTCTTAAGCAAGGGGTGACCAAAGAGGAGGCGAACGACATCATTGAAAAAATCAAAGCTGCTGGAGGAGTTGCAGTCATGGAG

Protein sequence

MKLVAVARSLQVRFTLPKIIGSFQVRFFQPDFAPRDSTAKPKRYKYPPFYDPYGPRPPPSDKIIQLAEKIVALPVDERCQIGPALTERLRHPKLQPISVDGLDMGSEGGAGAGSSKVEEKKEKTAFDVKLEKFDAAAKIKVIKEVRSFTNLGLKEAKDLVEKVPAILKQGVTKEEANDIIEKIKAAGGVAVME

Homology

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BLAST of MS014541 vs. NCBI nr
Match: XP_022155073.1 (uncharacterized protein LOC111022207 [Momordica charantia] >XP_022155074.1 uncharacterized protein LOC111022207 [Momordica charantia])

HSP 1 Score: 366.3 bits (939), Expect = 1.6e-97
Identity = 190/193 (98.45%), Postives = 191/193 (98.96%), Query Frame = 0


Query: 1   MKLVAVARSLQVRFTLPKIIGSFQVRFFQPDFAPRDSTAKPKRYKYPPFYDPYGPRPPPS 60
           MKLVAVARSLQV  TLPK+IGSFQVRFFQPDFAPRDSTAKPKRYKYPPFYDPYGPRPPPS
Sbjct: 1   MKLVAVARSLQVHSTLPKVIGSFQVRFFQPDFAPRDSTAKPKRYKYPPFYDPYGPRPPPS 60

Query: 61  DKIIQLAEKIVALPVDERCQIGPALTERLRHPKLQPISVDGLDMGSEGGAGAGSSKVEEK 120
           DKIIQLAEKIVALPVDERCQIGPALTERLRHPKLQPISVDGLDMGSEGGAGAGSSKVEEK
Sbjct: 61  DKIIQLAEKIVALPVDERCQIGPALTERLRHPKLQPISVDGLDMGSEGGAGAGSSKVEEK 120

Query: 121 KEKTAFDVKLEKFDAAAKIKVIKEVRSFTNLGLKEAKDLVEKVPAILKQGVTKEEANDII 180
           KEKTAFDVKLEKFDAAAKIKVIKEVRSFTNLGLKEAKDLVEKVPAILKQGVTKEEANDII
Sbjct: 121 KEKTAFDVKLEKFDAAAKIKVIKEVRSFTNLGLKEAKDLVEKVPAILKQGVTKEEANDII 180

Query: 181 EKIKAAGGVAVME 194
           EKIKAAGGVAVME
Sbjct: 181 EKIKAAGGVAVME 193

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BLAST of MS014541 vs. NCBI nr
Match: KAG6607092.1 (50S ribosomal protein L7/L12, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 332.0 bits (850), Expect = 3.4e-87
Identity = 169/193 (87.56%), Postives = 181/193 (93.78%), Query Frame = 0


Query: 1   MKLVAVARSLQVRFTLPKIIGSFQVRFFQPDFAPRDSTAKPKRYKYPPFYDPYGPRPPPS 60
           MK++AVA+SLQ R TLPKIIGS QVRFFQPDF PRD  AKPK+YKYPPFYDPYGPRPPPS
Sbjct: 1   MKMIAVAQSLQARSTLPKIIGSLQVRFFQPDFTPRDPNAKPKKYKYPPFYDPYGPRPPPS 60

Query: 61  DKIIQLAEKIVALPVDERCQIGPALTERLRHPKLQPISVDGLDMGSEGGAGAGSSKVEEK 120
           +KIIQLAE+I ALPVDERCQIGPALTERL+HPKL+ ISVDG+DMGS GGA  GSSKVEEK
Sbjct: 61  NKIIQLAERIAALPVDERCQIGPALTERLKHPKLEQISVDGMDMGSGGGAATGSSKVEEK 120

Query: 121 KEKTAFDVKLEKFDAAAKIKVIKEVRSFTNLGLKEAKDLVEKVPAILKQGVTKEEANDII 180
           KEKTAFDVKLEKF+AAAKIKVIKEVR+FTNLGLKEAKDLVEKVPAILKQGVTKEEAN II
Sbjct: 121 KEKTAFDVKLEKFEAAAKIKVIKEVRAFTNLGLKEAKDLVEKVPAILKQGVTKEEANSII 180

Query: 181 EKIKAAGGVAVME 194
           EKIKAAGGVAVM+
Sbjct: 181 EKIKAAGGVAVMD 193

[Close]

BLAST of MS014541 vs. NCBI nr
Match: KAG7036781.1 (50S ribosomal protein L7/L12, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 332.0 bits (850), Expect = 3.4e-87
Identity = 169/193 (87.56%), Postives = 181/193 (93.78%), Query Frame = 0


Query: 1   MKLVAVARSLQVRFTLPKIIGSFQVRFFQPDFAPRDSTAKPKRYKYPPFYDPYGPRPPPS 60
           MK++AVA+SLQ R TLPKIIGS QVRFFQPDF PRD  AKPK+YKYPPFYDPYGPRPPPS
Sbjct: 1   MKMIAVAQSLQARSTLPKIIGSLQVRFFQPDFTPRDPNAKPKKYKYPPFYDPYGPRPPPS 60

Query: 61  DKIIQLAEKIVALPVDERCQIGPALTERLRHPKLQPISVDGLDMGSEGGAGAGSSKVEEK 120
           +KIIQLAE+I ALPVDERCQIGPALTERL+HPKL+ ISVDG+DMGS GGA  GSSKVEEK
Sbjct: 61  NKIIQLAERIAALPVDERCQIGPALTERLKHPKLEQISVDGMDMGSGGGAATGSSKVEEK 120

Query: 121 KEKTAFDVKLEKFDAAAKIKVIKEVRSFTNLGLKEAKDLVEKVPAILKQGVTKEEANDII 180
           KEKTAFDVKLEKF+AAAKIKVIKEVR+FTNLGLKEAKDLVEKVPAILKQGVTKEEAN II
Sbjct: 121 KEKTAFDVKLEKFEAAAKIKVIKEVRAFTNLGLKEAKDLVEKVPAILKQGVTKEEANSII 180

Query: 181 EKIKAAGGVAVME 194
           EKIKAAGGVAVM+
Sbjct: 181 EKIKAAGGVAVMD 193

[Close]

BLAST of MS014541 vs. NCBI nr
Match: XP_022949504.1 (uncharacterized protein LOC111452831 [Cucurbita moschata])

HSP 1 Score: 332.0 bits (850), Expect = 3.4e-87
Identity = 170/193 (88.08%), Postives = 180/193 (93.26%), Query Frame = 0


Query: 1   MKLVAVARSLQVRFTLPKIIGSFQVRFFQPDFAPRDSTAKPKRYKYPPFYDPYGPRPPPS 60
           MK++AVA+SLQ R TLPKIIG  QVRFFQPDF PRD  AKPKRYKYPPFYDPYGPRPPPS
Sbjct: 1   MKMIAVAQSLQARSTLPKIIGLLQVRFFQPDFTPRDPNAKPKRYKYPPFYDPYGPRPPPS 60

Query: 61  DKIIQLAEKIVALPVDERCQIGPALTERLRHPKLQPISVDGLDMGSEGGAGAGSSKVEEK 120
           +KIIQLAE+I ALPVDERCQIGPALTERL+HPKL+ ISVDG+DMGS GGA  GSSKVEEK
Sbjct: 61  NKIIQLAERIAALPVDERCQIGPALTERLKHPKLEQISVDGMDMGSGGGAATGSSKVEEK 120

Query: 121 KEKTAFDVKLEKFDAAAKIKVIKEVRSFTNLGLKEAKDLVEKVPAILKQGVTKEEANDII 180
           KEKTAFDVKLEKF+AAAKIKVIKEVR+FTNLGLKEAKDLVEKVPAILKQGVTKEEAN II
Sbjct: 121 KEKTAFDVKLEKFEAAAKIKVIKEVRAFTNLGLKEAKDLVEKVPAILKQGVTKEEANSII 180

Query: 181 EKIKAAGGVAVME 194
           EKIKAAGGVAVME
Sbjct: 181 EKIKAAGGVAVME 193

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BLAST of MS014541 vs. NCBI nr
Match: XP_023525921.1 (uncharacterized protein LOC111789392 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 331.6 bits (849), Expect = 4.4e-87
Identity = 169/193 (87.56%), Postives = 180/193 (93.26%), Query Frame = 0


Query: 1   MKLVAVARSLQVRFTLPKIIGSFQVRFFQPDFAPRDSTAKPKRYKYPPFYDPYGPRPPPS 60
           MK++AVA+SLQ R TLPKIIGS QVRFFQPDF PRD  AKPK+YKYPPFYDPYGPRPPPS
Sbjct: 1   MKMIAVAQSLQARSTLPKIIGSLQVRFFQPDFTPRDPNAKPKKYKYPPFYDPYGPRPPPS 60

Query: 61  DKIIQLAEKIVALPVDERCQIGPALTERLRHPKLQPISVDGLDMGSEGGAGAGSSKVEEK 120
           +KIIQLAE+I ALPVDERCQIGP LTERL+HPKL+ ISVDG+DMGS GGA  GSSKVEEK
Sbjct: 61  NKIIQLAERIAALPVDERCQIGPTLTERLKHPKLEQISVDGMDMGSGGGAATGSSKVEEK 120

Query: 121 KEKTAFDVKLEKFDAAAKIKVIKEVRSFTNLGLKEAKDLVEKVPAILKQGVTKEEANDII 180
           KEKTAFDVKLEKF+AAAKIKVIKEVR+FTNLGLKEAKDLVEKVPAILKQGVTKEEAN II
Sbjct: 121 KEKTAFDVKLEKFEAAAKIKVIKEVRAFTNLGLKEAKDLVEKVPAILKQGVTKEEANSII 180

Query: 181 EKIKAAGGVAVME 194
           EKIKAAGGVAVME
Sbjct: 181 EKIKAAGGVAVME 193

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BLAST of MS014541 vs. ExPASy Swiss-Prot
Match: P41189 (50S ribosomal protein L7/L12 OS=Liberibacter africanus OX=34020 GN=rplL PE=3 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 3.6e-15
Identity = 52/130 (40.00%), Postives = 72/130 (55.38%), Query Frame = 0


Query: 63  IIQLAEKIVALPVDERCQIGPALTERLRHPKLQPISVDGLDMGSEGGAGAGSSKVEEKKE 122
           I  + EK+ +L + +  ++   L E        P++V     G    A A         E
Sbjct: 4   IESIVEKLSSLTLLQAAELSKRLEEEWGVSAAAPVAVVASAAGESAAAVA---------E 63

Query: 123 KTAFDVKLEKFDAAAKIKVIKEVRSFTNLGLKEAKDLVEKVPAILKQGVTKEEANDIIEK 182
           KT F+V LE FDA  KI VIKEVR+ T LGLKEAKD VE  P  LK GV+K+EA ++ +K
Sbjct: 64  KTEFEVFLEGFDAKKKISVIKEVRAITELGLKEAKDFVESAPKSLKTGVSKDEAEELKKK 123

Query: 183 IKAAGGVAVM 193
           ++AAG   ++
Sbjct: 124 LEAAGATIIL 124

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BLAST of MS014541 vs. ExPASy Swiss-Prot
Match: Q2JM48 (50S ribosomal protein L7/L12 OS=Synechococcus sp. (strain JA-2-3B'a(2-13)) OX=321332 GN=rplL PE=3 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 4.7e-15
Identity = 51/129 (39.53%), Postives = 75/129 (58.14%), Query Frame = 0


Query: 59  PSDKIIQLAEKIVALPVDERCQIGPALTERLRHPKLQPISVDGLDMGSEGGAGAGSSKVE 118
           PS+++ ++ E++ AL + E  ++  A+ E        P     +       A A ++  E
Sbjct: 2   PSERVAKILEELKALSLLEASELVKAIEETFGVSAAAPAGGMVMAAPVAAAAAAPAAAPE 61

Query: 119 EKKEKTAFDVKLEKFDAAAKIKVIKEVRSFTNLGLKEAKDLVEKVPAILKQGVTKEEAND 178
             +E+TAFDV LE   A  KI ++K VR  T LGLK+AKDLVE  P  +K+GV KEEAND
Sbjct: 62  PVEEQTAFDVILEAVPADKKIAILKVVRELTGLGLKDAKDLVEAAPKPVKEGVAKEEAND 121

Query: 179 IIEKIKAAG 188
           I +K++ AG
Sbjct: 122 IKKKLEEAG 130

[Close]

BLAST of MS014541 vs. ExPASy Swiss-Prot
Match: A9BDG4 (50S ribosomal protein L7/L12 OS=Prochlorococcus marinus (strain MIT 9211) OX=93059 GN=rplL PE=3 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 8.0e-15
Identity = 46/93 (49.46%), Postives = 62/93 (66.67%), Query Frame = 0


Query: 101 GLDMGSEGGAGAGSSKVEEKKEKTAFDVKLEKFDAAAKIKVIKEVRSFTNLGLKEAKDLV 160
           G+ M + G  G  S+  E  +EKT FDV LE FDAAAKIKV+KEVR+ T LGL EAK +V
Sbjct: 40  GVVMAAPGAGGGASAAGEAAEEKTEFDVILESFDAAAKIKVLKEVRNATGLGLGEAKAMV 99

Query: 161 EKVPAILKQGVTKEEANDIIEKIKAAGGVAVME 194
           E  P  +K+G +KE+A  + + I+A GG   ++
Sbjct: 100 EAAPKTIKEGASKEDAEALKKAIEAVGGKVTLK 132

[Close]

BLAST of MS014541 vs. ExPASy Swiss-Prot
Match: Q2S1Q4 (50S ribosomal protein L7/L12 OS=Salinibacter ruber (strain DSM 13855 / M31) OX=309807 GN=rplL PE=3 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 8.0e-15
Identity = 55/126 (43.65%), Postives = 79/126 (62.70%), Query Frame = 0


Query: 63  IIQLAEKIVALPVDERCQIGPALTERLRHPKLQPISVDGLDMGSEGGAGAGSSKVEEKKE 122
           I +LAE++V L + E  ++   L E      +QP S  G+ + ++GG GA     EE  E
Sbjct: 4   IEELAEQLVGLTIQEANELANHLEEEY---DIQPASA-GVAVAADGGGGADGDAEEE--E 63

Query: 123 KTAFDVKLEKFDAAAKIKVIKEVRSFTNLGLKEAKDLVEKVPAILKQGVTKEEANDIIEK 182
           +TAFDV L       KI+VIKEVRS T +GLKEAK LV++ P  + +GV++EEA+D+  +
Sbjct: 64  QTAFDVVLTGI-GGNKIQVIKEVRSITGMGLKEAKSLVDEAPNPVSEGVSREEADDLKAQ 122

Query: 183 IKAAGG 189
           I+ AGG
Sbjct: 124 IEDAGG 122

[Close]

BLAST of MS014541 vs. ExPASy Swiss-Prot
Match: O22386 (50S ribosomal protein L12, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=RPL12-2 PE=2 SV=2)

HSP 1 Score: 80.5 bits (197), Expect = 2.3e-14
Identity = 50/130 (38.46%), Postives = 78/130 (60.00%), Query Frame = 0


Query: 60  SDKIIQLAEKIVALPVDERCQIGPALTERL--RHPKLQPISVDGLDMGSEGGAGAGSSKV 119
           S K+++L + I  L ++E   +   L ERL        P +V    + + G  GAG++  
Sbjct: 54  SPKVLELGDAIAGLTLEEARGLVDHLQERLGVSAAAFAPAAV----VAAPGAGGAGAAAD 113

Query: 120 EEKKEKTAFDVKLEKFDAAAKIKVIKEVRSFTNLGLKEAKDLVEKVPAILKQGVTKEEAN 179
           E   EKT FDV +E+  ++A+I  IK VR+ TNL LKEAKDL+E +P  +K+GV+K+EA 
Sbjct: 114 EAPAEKTEFDVVIEEVPSSARIASIKVVRALTNLALKEAKDLIEGLPKKVKEGVSKDEAE 173

Query: 180 DIIEKIKAAG 188
           D  ++++  G
Sbjct: 174 DAKKQLEEVG 179

[Close]

BLAST of MS014541 vs. ExPASy TrEMBL
Match: A0A6J1DM08 (uncharacterized protein LOC111022207 OS=Momordica charantia OX=3673 GN=LOC111022207 PE=4 SV=1)

HSP 1 Score: 366.3 bits (939), Expect = 7.8e-98
Identity = 190/193 (98.45%), Postives = 191/193 (98.96%), Query Frame = 0


Query: 1   MKLVAVARSLQVRFTLPKIIGSFQVRFFQPDFAPRDSTAKPKRYKYPPFYDPYGPRPPPS 60
           MKLVAVARSLQV  TLPK+IGSFQVRFFQPDFAPRDSTAKPKRYKYPPFYDPYGPRPPPS
Sbjct: 1   MKLVAVARSLQVHSTLPKVIGSFQVRFFQPDFAPRDSTAKPKRYKYPPFYDPYGPRPPPS 60

Query: 61  DKIIQLAEKIVALPVDERCQIGPALTERLRHPKLQPISVDGLDMGSEGGAGAGSSKVEEK 120
           DKIIQLAEKIVALPVDERCQIGPALTERLRHPKLQPISVDGLDMGSEGGAGAGSSKVEEK
Sbjct: 61  DKIIQLAEKIVALPVDERCQIGPALTERLRHPKLQPISVDGLDMGSEGGAGAGSSKVEEK 120

Query: 121 KEKTAFDVKLEKFDAAAKIKVIKEVRSFTNLGLKEAKDLVEKVPAILKQGVTKEEANDII 180
           KEKTAFDVKLEKFDAAAKIKVIKEVRSFTNLGLKEAKDLVEKVPAILKQGVTKEEANDII
Sbjct: 121 KEKTAFDVKLEKFDAAAKIKVIKEVRSFTNLGLKEAKDLVEKVPAILKQGVTKEEANDII 180

Query: 181 EKIKAAGGVAVME 194
           EKIKAAGGVAVME
Sbjct: 181 EKIKAAGGVAVME 193

[Close]

BLAST of MS014541 vs. ExPASy TrEMBL
Match: A0A6J1GD07 (uncharacterized protein LOC111452831 OS=Cucurbita moschata OX=3662 GN=LOC111452831 PE=4 SV=1)

HSP 1 Score: 332.0 bits (850), Expect = 1.6e-87
Identity = 170/193 (88.08%), Postives = 180/193 (93.26%), Query Frame = 0


Query: 1   MKLVAVARSLQVRFTLPKIIGSFQVRFFQPDFAPRDSTAKPKRYKYPPFYDPYGPRPPPS 60
           MK++AVA+SLQ R TLPKIIG  QVRFFQPDF PRD  AKPKRYKYPPFYDPYGPRPPPS
Sbjct: 1   MKMIAVAQSLQARSTLPKIIGLLQVRFFQPDFTPRDPNAKPKRYKYPPFYDPYGPRPPPS 60

Query: 61  DKIIQLAEKIVALPVDERCQIGPALTERLRHPKLQPISVDGLDMGSEGGAGAGSSKVEEK 120
           +KIIQLAE+I ALPVDERCQIGPALTERL+HPKL+ ISVDG+DMGS GGA  GSSKVEEK
Sbjct: 61  NKIIQLAERIAALPVDERCQIGPALTERLKHPKLEQISVDGMDMGSGGGAATGSSKVEEK 120

Query: 121 KEKTAFDVKLEKFDAAAKIKVIKEVRSFTNLGLKEAKDLVEKVPAILKQGVTKEEANDII 180
           KEKTAFDVKLEKF+AAAKIKVIKEVR+FTNLGLKEAKDLVEKVPAILKQGVTKEEAN II
Sbjct: 121 KEKTAFDVKLEKFEAAAKIKVIKEVRAFTNLGLKEAKDLVEKVPAILKQGVTKEEANSII 180

Query: 181 EKIKAAGGVAVME 194
           EKIKAAGGVAVME
Sbjct: 181 EKIKAAGGVAVME 193

[Close]

BLAST of MS014541 vs. ExPASy TrEMBL
Match: A0A6J1K6S5 (uncharacterized protein LOC111492812 OS=Cucurbita maxima OX=3661 GN=LOC111492812 PE=4 SV=1)

HSP 1 Score: 330.1 bits (845), Expect = 6.2e-87
Identity = 168/193 (87.05%), Postives = 179/193 (92.75%), Query Frame = 0


Query: 1   MKLVAVARSLQVRFTLPKIIGSFQVRFFQPDFAPRDSTAKPKRYKYPPFYDPYGPRPPPS 60
           MK++ VA+SLQ R  LPKIIG  QVRFFQPDF PRD  AKPKRYKYPPFYDPYGPRPPPS
Sbjct: 1   MKMITVAQSLQARSALPKIIGLLQVRFFQPDFTPRDPNAKPKRYKYPPFYDPYGPRPPPS 60

Query: 61  DKIIQLAEKIVALPVDERCQIGPALTERLRHPKLQPISVDGLDMGSEGGAGAGSSKVEEK 120
           +KIIQLAE+I ALPVDERCQIGPALTERL+HPKL+ ISVDG+D+GSEGGA  GSSKVEEK
Sbjct: 61  NKIIQLAERIAALPVDERCQIGPALTERLKHPKLEQISVDGMDLGSEGGAATGSSKVEEK 120

Query: 121 KEKTAFDVKLEKFDAAAKIKVIKEVRSFTNLGLKEAKDLVEKVPAILKQGVTKEEANDII 180
           KEKTAFDVKLEKF+AAAKIKVIKEVR+FTNLGLKEAKDLVEKVPAILKQGVTKEEAN II
Sbjct: 121 KEKTAFDVKLEKFEAAAKIKVIKEVRAFTNLGLKEAKDLVEKVPAILKQGVTKEEANSII 180

Query: 181 EKIKAAGGVAVME 194
           EKIKAAGGVAVME
Sbjct: 181 EKIKAAGGVAVME 193

[Close]

BLAST of MS014541 vs. ExPASy TrEMBL
Match: A0A0A0L907 (Ribosomal_L12 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G623960 PE=4 SV=1)

HSP 1 Score: 317.8 bits (813), Expect = 3.2e-83
Identity = 166/193 (86.01%), Postives = 173/193 (89.64%), Query Frame = 0


Query: 1   MKLVAVARSLQVRFTLPKIIGSFQVRFFQPDFAPRDSTAKPKRYKYPPFYDPYGPRPPPS 60
           MKL  VA+SLQVR T  KIIG  QVRFFQPDF PRD  AKPK+YKYP FYDPYGPRPPPS
Sbjct: 1   MKLTVVAQSLQVRSTFAKIIGLSQVRFFQPDFTPRDPNAKPKKYKYPAFYDPYGPRPPPS 60

Query: 61  DKIIQLAEKIVALPVDERCQIGPALTERLRHPKLQPISVDGLDMGSEGGAGAGSSKVEEK 120
           DKII+LAE+IVALP  ERCQIGP L E+LRHPKLQ ISVDGLDMG EGGA AGSS VEEK
Sbjct: 61  DKIIELAERIVALPAAERCQIGPTLGEKLRHPKLQEISVDGLDMGPEGGAAAGSSNVEEK 120

Query: 121 KEKTAFDVKLEKFDAAAKIKVIKEVRSFTNLGLKEAKDLVEKVPAILKQGVTKEEANDII 180
           KEKTAFDVKLEKFDAA+KIKVIKEVR+FTNLGLKEAKDLVEKVPAILKQGVTKEEAN II
Sbjct: 121 KEKTAFDVKLEKFDAASKIKVIKEVRAFTNLGLKEAKDLVEKVPAILKQGVTKEEANGII 180

Query: 181 EKIKAAGGVAVME 194
           EKIKAAGGVAVME
Sbjct: 181 EKIKAAGGVAVME 193

[Close]

BLAST of MS014541 vs. ExPASy TrEMBL
Match: A0A1S3BPI3 (50S ribosomal protein L7/L12 OS=Cucumis melo OX=3656 GN=LOC103492120 PE=4 SV=1)

HSP 1 Score: 317.4 bits (812), Expect = 4.2e-83
Identity = 167/193 (86.53%), Postives = 172/193 (89.12%), Query Frame = 0


Query: 1   MKLVAVARSLQVRFTLPKIIGSFQVRFFQPDFAPRDSTAKPKRYKYPPFYDPYGPRPPPS 60
           MKL  VARSLQ R TL KIIG  QVRFFQPDF PRD  AKPK+YKYPPFYDPYGPRPPPS
Sbjct: 1   MKLTVVARSLQARSTLTKIIGLSQVRFFQPDFTPRDPKAKPKKYKYPPFYDPYGPRPPPS 60

Query: 61  DKIIQLAEKIVALPVDERCQIGPALTERLRHPKLQPISVDGLDMGSEGGAGAGSSKVEEK 120
           DKII LAE+I ALP  ER QIGP L E+LRHPKLQ ISVDGLDMGSEGGA AGSS VEEK
Sbjct: 61  DKIIALAERIAALPAAERSQIGPTLGEKLRHPKLQEISVDGLDMGSEGGAAAGSSNVEEK 120

Query: 121 KEKTAFDVKLEKFDAAAKIKVIKEVRSFTNLGLKEAKDLVEKVPAILKQGVTKEEANDII 180
           KEKTAFDVKLEKFDAA+KIKVIKEVR+FTNLGLKEAKDLVEKVPAILKQGVTKEEAN II
Sbjct: 121 KEKTAFDVKLEKFDAASKIKVIKEVRAFTNLGLKEAKDLVEKVPAILKQGVTKEEANGII 180

Query: 181 EKIKAAGGVAVME 194
           EKIKAAGGVAVME
Sbjct: 181 EKIKAAGGVAVME 193

[Close]

BLAST of MS014541 vs. TAIR 10
Match: AT3G06040.1 (Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family protein )

HSP 1 Score: 231.1 bits (588), Expect = 7.5e-61
Identity = 129/193 (66.84%), Postives = 151/193 (78.24%), Query Frame = 0


Query: 1   MKLVAVARSLQVRFTLPKIIGSFQVRFFQPDFAPRDSTAKPKRYKYPPFYDPYGPRPPPS 60
           MKL+++ R+++ R   P++I S QVRF Q D     S AKPK+YKYP  YDPYGPRP PS
Sbjct: 1   MKLISLVRNVRSRQCQPEVIWSVQVRFLQQDSV---SKAKPKKYKYPSVYDPYGPRPQPS 60

Query: 61  DKIIQLAEKIVALPVDERCQIGPALTERLRHPKLQPISVDGLDMGSEGGAGAGSSKVEEK 120
            KI++LAE+I AL  +ER QIGPAL E LR PK Q IS DG+    + GAG     VEEK
Sbjct: 61  SKIMELAERIAALSPEERKQIGPALNEHLRLPKQQMISSDGIGAKQDTGAG----NVEEK 120

Query: 121 KEKTAFDVKLEKFDAAAKIKVIKEVRSFTNLGLKEAKDLVEKVPAILKQGVTKEEANDII 180
           KEKTAFDVKLEKF+A+ KIKVIKEVR+FT+LGLKEAK+LVEKVPAILKQGVTKEEAN+II
Sbjct: 121 KEKTAFDVKLEKFNASDKIKVIKEVRTFTSLGLKEAKELVEKVPAILKQGVTKEEANEII 180

Query: 181 EKIKAAGGVAVME 194
            KIKA GG+AVME
Sbjct: 181 AKIKAVGGIAVME 186

[Close]

BLAST of MS014541 vs. TAIR 10
Match: AT3G06040.2 (Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family protein )

HSP 1 Score: 231.1 bits (588), Expect = 7.5e-61
Identity = 129/193 (66.84%), Postives = 151/193 (78.24%), Query Frame = 0


Query: 1   MKLVAVARSLQVRFTLPKIIGSFQVRFFQPDFAPRDSTAKPKRYKYPPFYDPYGPRPPPS 60
           MKL+++ R+++ R   P++I S QVRF Q D     S AKPK+YKYP  YDPYGPRP PS
Sbjct: 1   MKLISLVRNVRSRQCQPEVIWSVQVRFLQQDSV---SKAKPKKYKYPSVYDPYGPRPQPS 60

Query: 61  DKIIQLAEKIVALPVDERCQIGPALTERLRHPKLQPISVDGLDMGSEGGAGAGSSKVEEK 120
            KI++LAE+I AL  +ER QIGPAL E LR PK Q IS DG+    + GAG     VEEK
Sbjct: 61  SKIMELAERIAALSPEERKQIGPALNEHLRLPKQQMISSDGIGAKQDTGAG----NVEEK 120

Query: 121 KEKTAFDVKLEKFDAAAKIKVIKEVRSFTNLGLKEAKDLVEKVPAILKQGVTKEEANDII 180
           KEKTAFDVKLEKF+A+ KIKVIKEVR+FT+LGLKEAK+LVEKVPAILKQGVTKEEAN+II
Sbjct: 121 KEKTAFDVKLEKFNASDKIKVIKEVRTFTSLGLKEAKELVEKVPAILKQGVTKEEANEII 180

Query: 181 EKIKAAGGVAVME 194
            KIKA GG+AVME
Sbjct: 181 AKIKAVGGIAVME 186

[Close]

BLAST of MS014541 vs. TAIR 10
Match: AT3G06040.3 (Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family protein )

HSP 1 Score: 231.1 bits (588), Expect = 7.5e-61
Identity = 129/193 (66.84%), Postives = 151/193 (78.24%), Query Frame = 0


Query: 1   MKLVAVARSLQVRFTLPKIIGSFQVRFFQPDFAPRDSTAKPKRYKYPPFYDPYGPRPPPS 60
           MKL+++ R+++ R   P++I S QVRF Q D     S AKPK+YKYP  YDPYGPRP PS
Sbjct: 1   MKLISLVRNVRSRQCQPEVIWSVQVRFLQQDSV---SKAKPKKYKYPSVYDPYGPRPQPS 60

Query: 61  DKIIQLAEKIVALPVDERCQIGPALTERLRHPKLQPISVDGLDMGSEGGAGAGSSKVEEK 120
            KI++LAE+I AL  +ER QIGPAL E LR PK Q IS DG+    + GAG     VEEK
Sbjct: 61  SKIMELAERIAALSPEERKQIGPALNEHLRLPKQQMISSDGIGAKQDTGAG----NVEEK 120

Query: 121 KEKTAFDVKLEKFDAAAKIKVIKEVRSFTNLGLKEAKDLVEKVPAILKQGVTKEEANDII 180
           KEKTAFDVKLEKF+A+ KIKVIKEVR+FT+LGLKEAK+LVEKVPAILKQGVTKEEAN+II
Sbjct: 121 KEKTAFDVKLEKFNASDKIKVIKEVRTFTSLGLKEAKELVEKVPAILKQGVTKEEANEII 180

Query: 181 EKIKAAGGVAVME 194
            KIKA GG+AVME
Sbjct: 181 AKIKAVGGIAVME 186

[Close]

BLAST of MS014541 vs. TAIR 10
Match: AT1G70190.1 (Ribosomal protein L7/L12, oligomerisation;Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like )

HSP 1 Score: 119.4 bits (298), Expect = 3.2e-27
Identity = 70/154 (45.45%), Postives = 102/154 (66.23%), Query Frame = 0


Query: 47  PPFYDPYGPRPPPSDKIIQLAEKIVALPVDERCQIGPALTERLRHPKLQPISV------D 106
           P  +DP   R PP+D++ +L ++I +L + E  ++G  + ++    +L  ++V       
Sbjct: 55  PATFDPTEHRSPPTDRVFRLVDEISSLTLLEISELGSIIMKKKGMTELPTVAVMKPGAGG 114

Query: 107 GLDMGSEGGAGAGSSKVEEKK-EKTAFDVKLEKFDAAAKIKVIKEVRSFTNLGLKEAKDL 166
           G+ +G  GG  + S   EE K EKT F++KLE F+A+AKIK+IKE+RSFT+LGLKEAK L
Sbjct: 115 GVGVGGGGGMVSQSGVSEEAKVEKTVFEIKLESFEASAKIKIIKELRSFTDLGLKEAKAL 174

Query: 167 VEKVPAILKQGVTKEEANDIIEKIKAAGGVAVME 194
           VEK PAILK G++KEE   I+EK+KA G   V+E
Sbjct: 175 VEKTPAILKAGLSKEEGEKILEKLKALGAKVVLE 208

[Close]

BLAST of MS014541 vs. TAIR 10
Match: AT1G70190.2 (Ribosomal protein L7/L12, oligomerisation;Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like )

HSP 1 Score: 119.4 bits (298), Expect = 3.2e-27
Identity = 70/154 (45.45%), Postives = 102/154 (66.23%), Query Frame = 0


Query: 47  PPFYDPYGPRPPPSDKIIQLAEKIVALPVDERCQIGPALTERLRHPKLQPISV------D 106
           P  +DP   R PP+D++ +L ++I +L + E  ++G  + ++    +L  ++V       
Sbjct: 55  PATFDPTEHRSPPTDRVFRLVDEISSLTLLEISELGSIIMKKKGMTELPTVAVMKPGAGG 114

Query: 107 GLDMGSEGGAGAGSSKVEEKK-EKTAFDVKLEKFDAAAKIKVIKEVRSFTNLGLKEAKDL 166
           G+ +G  GG  + S   EE K EKT F++KLE F+A+AKIK+IKE+RSFT+LGLKEAK L
Sbjct: 115 GVGVGGGGGMVSQSGVSEEAKVEKTVFEIKLESFEASAKIKIIKELRSFTDLGLKEAKAL 174

Query: 167 VEKVPAILKQGVTKEEANDIIEKIKAAGGVAVME 194
           VEK PAILK G++KEE   I+EK+KA G   V+E
Sbjct: 175 VEKTPAILKAGLSKEEGEKILEKLKALGAKVVLE 208

The following BLAST results are available for this feature:

BLAST of MS014541 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022155073.1	1.6e-97	98.45	uncharacterized protein LOC111022207 [Momordica charantia] >XP_022155074.1 uncha...	[more]
KAG6607092.1	3.4e-87	87.56	50S ribosomal protein L7/L12, partial [Cucurbita argyrosperma subsp. sororia]	[more]
KAG7036781.1	3.4e-87	87.56	50S ribosomal protein L7/L12, partial [Cucurbita argyrosperma subsp. argyrosperm...	[more]
XP_022949504.1	3.4e-87	88.08	uncharacterized protein LOC111452831 [Cucurbita moschata]	[more]
XP_023525921.1	4.4e-87	87.56	uncharacterized protein LOC111789392 [Cucurbita pepo subsp. pepo]	[more]

BLAST of MS014541 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P41189	3.6e-15	40.00	50S ribosomal protein L7/L12 OS=Liberibacter africanus OX=34020 GN=rplL PE=3 SV=...	[more]
Q2JM48	4.7e-15	39.53	50S ribosomal protein L7/L12 OS=Synechococcus sp. (strain JA-2-3B'a(2-13)) OX=32...	[more]
A9BDG4	8.0e-15	49.46	50S ribosomal protein L7/L12 OS=Prochlorococcus marinus (strain MIT 9211) OX=930...	[more]
Q2S1Q4	8.0e-15	43.65	50S ribosomal protein L7/L12 OS=Salinibacter ruber (strain DSM 13855 / M31) OX=3...	[more]
O22386	2.3e-14	38.46	50S ribosomal protein L12, chloroplastic OS=Oryza sativa subsp. japonica OX=3994...	[more]

BLAST of MS014541 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DM08	7.8e-98	98.45	uncharacterized protein LOC111022207 OS=Momordica charantia OX=3673 GN=LOC111022...	[more]
A0A6J1GD07	1.6e-87	88.08	uncharacterized protein LOC111452831 OS=Cucurbita moschata OX=3662 GN=LOC1114528...	[more]
A0A6J1K6S5	6.2e-87	87.05	uncharacterized protein LOC111492812 OS=Cucurbita maxima OX=3661 GN=LOC111492812...	[more]
A0A0A0L907	3.2e-83	86.01	Ribosomal_L12 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G6239...	[more]
A0A1S3BPI3	4.2e-83	86.53	50S ribosomal protein L7/L12 OS=Cucumis melo OX=3656 GN=LOC103492120 PE=4 SV=1	[more]

BLAST of MS014541 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G06040.1	7.5e-61	66.84	Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family pr...	[more]
AT3G06040.2	7.5e-61	66.84	Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family pr...	[more]
AT3G06040.3	7.5e-61	66.84	Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family pr...	[more]
AT1G70190.1	3.2e-27	45.45	Ribosomal protein L7/L12, oligomerisation;Ribosomal protein L7/L12, C-terminal/a...	[more]
AT1G70190.2	3.2e-27	45.45	Ribosomal protein L7/L12, oligomerisation;Ribosomal protein L7/L12, C-terminal/a...	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013823	Ribosomal protein L7/L12, C-terminal	PFAM	PF00542	Ribosomal_L12	coord: 126..189 e-value: 3.2E-22 score: 78.7
IPR014719	Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like	GENE3D	3.30.1390.10		coord: 119..192 e-value: 8.6E-23 score: 82.2
IPR014719	Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like	SUPERFAMILY	54736	ClpS-like	coord: 122..192
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 98..118
None	No IPR available	PANTHER	PTHR45987:SF6	RIBOSOMAL PROTEIN L12/ ATP-DEPENDENT CLP PROTEASE ADAPTOR PROTEIN CLPS FAMILY PROTEIN	coord: 1..193
IPR000206	Ribosomal protein L7/L12	PANTHER	PTHR45987	39S RIBOSOMAL PROTEIN L12	coord: 1..193
IPR000206	Ribosomal protein L7/L12	CDD	cd00387	Ribosomal_L7_L12	coord: 62..192 e-value: 5.83002E-35 score: 118.027

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS014541.1	MS014541.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003735	structural constituent of ribosome