MS014218 (gene) Bitter gourd (TR) v1

Overview


Name	MS014218
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Thylakoid soluble phosphoprotein TSP
Location	scaffold5: 1461586 .. 1461879 (+)
RNA-Seq Expression	MS014218
Synteny	MS014218

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTGCTCTGCCCATCGCATTCTCTCCGGCCGCCGGACGGGTCTTCGCGGCCACGGCGGCCAAGGGCGCCGGCGAAAGCAAGAAAGAGAAGGGCCTTTTCGATTGGATCCTCGGCGGCCTCGAGAAGGATCAGCTTCTCGAAACCGACCCCATTCTTCAAAAGGTCGAGGGGAAGAACAACGGCGGCGCCGGCGCCGGCGCTGCTGACGCTGCCCGTGGCCGGAAGAACTCCGTCCAAGTCCCGCCCAAGAAGAACGGCGGCGGATTCGGCGGTCTATTTGCCAAGAAAGAC

mRNA sequence

ATGGCTGCTCTGCCCATCGCATTCTCTCCGGCCGCCGGACGGGTCTTCGCGGCCACGGCGGCCAAGGGCGCCGGCGAAAGCAAGAAAGAGAAGGGCCTTTTCGATTGGATCCTCGGCGGCCTCGAGAAGGATCAGCTTCTCGAAACCGACCCCATTCTTCAAAAGGTCGAGGGGAAGAACAACGGCGGCGCCGGCGCCGGCGCTGCTGACGCTGCCCGTGGCCGGAAGAACTCCGTCCAAGTCCCGCCCAAGAAGAACGGCGGCGGATTCGGCGGTCTATTTGCCAAGAAAGAC

Coding sequence (CDS)

ATGGCTGCTCTGCCCATCGCATTCTCTCCGGCCGCCGGACGGGTCTTCGCGGCCACGGCGGCCAAGGGCGCCGGCGAAAGCAAGAAAGAGAAGGGCCTTTTCGATTGGATCCTCGGCGGCCTCGAGAAGGATCAGCTTCTCGAAACCGACCCCATTCTTCAAAAGGTCGAGGGGAAGAACAACGGCGGCGCCGGCGCCGGCGCTGCTGACGCTGCCCGTGGCCGGAAGAACTCCGTCCAAGTCCCGCCCAAGAAGAACGGCGGCGGATTCGGCGGTCTATTTGCCAAGAAAGAC

Protein sequence

MAALPIAFSPAAGRVFAATAAKGAGESKKEKGLFDWILGGLEKDQLLETDPILQKVEGKNNGGAGAGAADAARGRKNSVQVPPKKNGGGFGGLFAKKD

Homology

[Close]

BLAST of MS014218 vs. NCBI nr
Match: XP_004143212.1 (uncharacterized protein LOC101205268 [Cucumis sativus] >KGN47098.1 hypothetical protein Csa_020752 [Cucumis sativus])

HSP 1 Score: 152.9 bits (385), Expect = 1.4e-33
Identity = 80/98 (81.63%), Postives = 85/98 (86.73%), Query Frame = 0


Query: 1  MAALPIAFSPAAGRVFAATAAKGAGESKKEKGLFDWILGGLEKDQLLETDPILQKVEGKN 60
          MA+LPIAFSPAAGRVFAATAAKGAGESKKEKGL DWI+G L KDQLLETDP+LQKVEGK 
Sbjct: 1  MASLPIAFSPAAGRVFAATAAKGAGESKKEKGLLDWIIGSLNKDQLLETDPVLQKVEGK- 60

Query: 61 NGGAGAGAADAARGRKNSVQVPPKKNGGGFGGLFAKKD 99
          +  +G G      GRKNSVQVPPKKNGGGFGGLFAKKD
Sbjct: 61 DAASGNGTGSVRGGRKNSVQVPPKKNGGGFGGLFAKKD 97

[Close]

BLAST of MS014218 vs. NCBI nr
Match: XP_008464052.1 (PREDICTED: uncharacterized protein LOC103502033 [Cucumis melo] >KAA0061846.1 uncharacterized protein E6C27_scaffold89G00830 [Cucumis melo var. makuwa] >TYK15410.1 uncharacterized protein E5676_scaffold571G00530 [Cucumis melo var. makuwa])

HSP 1 Score: 149.8 bits (377), Expect = 1.2e-32
Identity = 78/98 (79.59%), Postives = 83/98 (84.69%), Query Frame = 0


Query: 1  MAALPIAFSPAAGRVFAATAAKGAGESKKEKGLFDWILGGLEKDQLLETDPILQKVEGKN 60
          MA+LPIAFSPAAGRVFAATAAKGAGESKKEKGL DWI+G L KDQLLETDP+LQKVEGK+
Sbjct: 1  MASLPIAFSPAAGRVFAATAAKGAGESKKEKGLLDWIIGSLNKDQLLETDPVLQKVEGKD 60

Query: 61 NGGAGAGAADAARGRKNSVQVPPKKNGGGFGGLFAKKD 99
            G         RGRKNSVQ+PPKKNGG FGGLFAKKD
Sbjct: 61 --GTSGNGTGTVRGRKNSVQIPPKKNGGVFGGLFAKKD 96

[Close]

BLAST of MS014218 vs. NCBI nr
Match: XP_038901860.1 (uncharacterized protein LOC120088545 [Benincasa hispida])

HSP 1 Score: 148.7 bits (374), Expect = 2.7e-32
Identity = 79/98 (80.61%), Postives = 84/98 (85.71%), Query Frame = 0


Query: 1  MAALPIAFSPAAGRVFAATAAKGAGESKKEKGLFDWILGGLEKDQLLETDPILQKVEGKN 60
          MA+LPIAFSPAA RVFAATAAKGAGESKKE+GL DWI+G L KDQLLETDP+LQKVEGK 
Sbjct: 1  MASLPIAFSPAAVRVFAATAAKGAGESKKEQGLLDWIIGSLNKDQLLETDPVLQKVEGK- 60

Query: 61 NGGAGAGAADAARGRKNSVQVPPKKNGGGFGGLFAKKD 99
             AG G+     GRKNSVQVPPKKNGGGFGGLFAKKD
Sbjct: 61 -AAAGNGSGTVRGGRKNSVQVPPKKNGGGFGGLFAKKD 96

[Close]

BLAST of MS014218 vs. NCBI nr
Match: KAG7010512.1 (hypothetical protein SDJN02_27306, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 143.3 bits (360), Expect = 1.1e-30
Identity = 79/99 (79.80%), Postives = 86/99 (86.87%), Query Frame = 0


Query: 1  MAALPIAFSPAAGRVFAATAAKGAGESKKEKGLFDWILGGLEKDQLLETDPILQKVEGK- 60
          MA+LPIAFSPAAGRVFAATAAKGAGESKKEKGL DWI+G LE+DQLLETDP+LQKVEGK 
Sbjct: 1  MASLPIAFSPAAGRVFAATAAKGAGESKKEKGLLDWIIGSLERDQLLETDPVLQKVEGKD 60

Query: 61 NNGGAGAGAADAARGRKNSVQVPPKKNGGGFGGLFAKKD 99
          +N G  +G      GRKNSVQVPPKKN GGFGGLFAK+D
Sbjct: 61 SNSGTVSG------GRKNSVQVPPKKN-GGFGGLFAKRD 92

[Close]

BLAST of MS014218 vs. NCBI nr
Match: XP_023532336.1 (uncharacterized protein LOC111794525 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 142.5 bits (358), Expect = 1.9e-30
Identity = 77/98 (78.57%), Postives = 82/98 (83.67%), Query Frame = 0


Query: 1  MAALPIAFSPAAGRVFAATAAKGAGESKKEKGLFDWILGGLEKDQLLETDPILQKVEGKN 60
          MA+L  AFSPAAGRVFAATAAKGAGESKKEKG+ DWILGG+EKDQLLETDP+LQKVEGKN
Sbjct: 1  MASLSFAFSPAAGRVFAATAAKGAGESKKEKGILDWILGGMEKDQLLETDPVLQKVEGKN 60

Query: 61 NGGAGAGAADAARGRKNSVQVPPKKNGGGFGGLFAKKD 99
           G    G      G+KNSVQVPPKKN G FGGLFAKKD
Sbjct: 61 GGANNGGTVRG--GKKNSVQVPPKKN-GVFGGLFAKKD 95

[Close]

BLAST of MS014218 vs. ExPASy TrEMBL
Match: A0A0A0KC59 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G187910 PE=4 SV=1)

HSP 1 Score: 152.9 bits (385), Expect = 6.9e-34
Identity = 80/98 (81.63%), Postives = 85/98 (86.73%), Query Frame = 0


Query: 1  MAALPIAFSPAAGRVFAATAAKGAGESKKEKGLFDWILGGLEKDQLLETDPILQKVEGKN 60
          MA+LPIAFSPAAGRVFAATAAKGAGESKKEKGL DWI+G L KDQLLETDP+LQKVEGK 
Sbjct: 1  MASLPIAFSPAAGRVFAATAAKGAGESKKEKGLLDWIIGSLNKDQLLETDPVLQKVEGK- 60

Query: 61 NGGAGAGAADAARGRKNSVQVPPKKNGGGFGGLFAKKD 99
          +  +G G      GRKNSVQVPPKKNGGGFGGLFAKKD
Sbjct: 61 DAASGNGTGSVRGGRKNSVQVPPKKNGGGFGGLFAKKD 97

[Close]

BLAST of MS014218 vs. ExPASy TrEMBL
Match: A0A5A7V5S9 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold571G00530 PE=4 SV=1)

HSP 1 Score: 149.8 bits (377), Expect = 5.8e-33
Identity = 78/98 (79.59%), Postives = 83/98 (84.69%), Query Frame = 0


Query: 1  MAALPIAFSPAAGRVFAATAAKGAGESKKEKGLFDWILGGLEKDQLLETDPILQKVEGKN 60
          MA+LPIAFSPAAGRVFAATAAKGAGESKKEKGL DWI+G L KDQLLETDP+LQKVEGK+
Sbjct: 1  MASLPIAFSPAAGRVFAATAAKGAGESKKEKGLLDWIIGSLNKDQLLETDPVLQKVEGKD 60

Query: 61 NGGAGAGAADAARGRKNSVQVPPKKNGGGFGGLFAKKD 99
            G         RGRKNSVQ+PPKKNGG FGGLFAKKD
Sbjct: 61 --GTSGNGTGTVRGRKNSVQIPPKKNGGVFGGLFAKKD 96

[Close]

BLAST of MS014218 vs. ExPASy TrEMBL
Match: A0A1S3CKK5 (uncharacterized protein LOC103502033 OS=Cucumis melo OX=3656 GN=LOC103502033 PE=4 SV=1)

HSP 1 Score: 149.8 bits (377), Expect = 5.8e-33
Identity = 78/98 (79.59%), Postives = 83/98 (84.69%), Query Frame = 0


Query: 1  MAALPIAFSPAAGRVFAATAAKGAGESKKEKGLFDWILGGLEKDQLLETDPILQKVEGKN 60
          MA+LPIAFSPAAGRVFAATAAKGAGESKKEKGL DWI+G L KDQLLETDP+LQKVEGK+
Sbjct: 1  MASLPIAFSPAAGRVFAATAAKGAGESKKEKGLLDWIIGSLNKDQLLETDPVLQKVEGKD 60

Query: 61 NGGAGAGAADAARGRKNSVQVPPKKNGGGFGGLFAKKD 99
            G         RGRKNSVQ+PPKKNGG FGGLFAKKD
Sbjct: 61 --GTSGNGTGTVRGRKNSVQIPPKKNGGVFGGLFAKKD 96

[Close]

BLAST of MS014218 vs. ExPASy TrEMBL
Match: A0A6J1L2X7 (uncharacterized protein LOC111499927 OS=Cucurbita maxima OX=3661 GN=LOC111499927 PE=4 SV=1)

HSP 1 Score: 141.0 bits (354), Expect = 2.7e-30
Identity = 76/98 (77.55%), Postives = 81/98 (82.65%), Query Frame = 0


Query: 1  MAALPIAFSPAAGRVFAATAAKGAGESKKEKGLFDWILGGLEKDQLLETDPILQKVEGKN 60
          MA+L  AFSPAAGRVFAATAAKGAGE KKEKG+ DWILGG+EKDQLLETDP+LQKVEGKN
Sbjct: 1  MASLSFAFSPAAGRVFAATAAKGAGEGKKEKGILDWILGGMEKDQLLETDPVLQKVEGKN 60

Query: 61 NGGAGAGAADAARGRKNSVQVPPKKNGGGFGGLFAKKD 99
           G    G      G+KNSVQVPPKKN G FGGLFAKKD
Sbjct: 61 GGANNGGTVRG--GKKNSVQVPPKKN-GVFGGLFAKKD 95

[Close]

BLAST of MS014218 vs. ExPASy TrEMBL
Match: A0A6J1G777 (uncharacterized protein LOC111451452 OS=Cucurbita moschata OX=3662 GN=LOC111451452 PE=4 SV=1)

HSP 1 Score: 141.0 bits (354), Expect = 2.7e-30
Identity = 76/98 (77.55%), Postives = 81/98 (82.65%), Query Frame = 0


Query: 1  MAALPIAFSPAAGRVFAATAAKGAGESKKEKGLFDWILGGLEKDQLLETDPILQKVEGKN 60
          MA+L  AFSPAAGRVFAATAAKGAGE KKEKG+ DWILGG+EKDQLLETDP+LQKVEGKN
Sbjct: 1  MASLSFAFSPAAGRVFAATAAKGAGEGKKEKGILDWILGGMEKDQLLETDPVLQKVEGKN 60

Query: 61 NGGAGAGAADAARGRKNSVQVPPKKNGGGFGGLFAKKD 99
           G    G      G+KNSVQVPPKKN G FGGLFAKKD
Sbjct: 61 GGANNGGTVRG--GKKNSVQVPPKKN-GVFGGLFAKKD 95

[Close]

BLAST of MS014218 vs. TAIR 10
Match: AT3G47070.1 (LOCATED IN: thylakoid, chloroplast thylakoid membrane, chloroplast, chloroplast envelope; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Thylakoid soluble phosphoprotein TSP9 (InterPro:IPR021584); Has 37 Blast hits to 37 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 37; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 66.6 bits (161), Expect = 1.2e-11
Identity = 42/95 (44.21%), Postives = 60/95 (63.16%), Query Frame = 0


Query: 1  MAALPIAFSPAAGRVFAATAAKGAGESKKEKGLFDWILGGLEK-DQLLETDPILQKVEGK 60
          +++L ++F+PA  RV+A +   G+G  K+EK   D++LG + K DQ  ET+P+L+KV+ K
Sbjct: 2  VSSLLMSFAPATVRVYATSTKGGSGGPKEEKNPIDFVLGFMTKQDQFYETNPLLKKVDEK 61

Query: 61 NNGGAGAGAADAARGRKNSVQVP-PKKNGGGFGGL 94
             G   G     RG KNS   P PKK+ GGFGGL
Sbjct: 62 E--GTTTGGRGTVRGGKNSAPTPVPKKSEGGFGGL 94

The following BLAST results are available for this feature:

BLAST of MS014218 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004143212.1	1.4e-33	81.63	uncharacterized protein LOC101205268 [Cucumis sativus] >KGN47098.1 hypothetical ...	[more]
XP_008464052.1	1.2e-32	79.59	PREDICTED: uncharacterized protein LOC103502033 [Cucumis melo] >KAA0061846.1 unc...	[more]
XP_038901860.1	2.7e-32	80.61	uncharacterized protein LOC120088545 [Benincasa hispida]	[more]
KAG7010512.1	1.1e-30	79.80	hypothetical protein SDJN02_27306, partial [Cucurbita argyrosperma subsp. argyro...	[more]
XP_023532336.1	1.9e-30	78.57	uncharacterized protein LOC111794525 [Cucurbita pepo subsp. pepo]	[more]

BLAST of MS014218 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MS014218 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KC59	6.9e-34	81.63	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G187910 PE=4 SV=1	[more]
A0A5A7V5S9	5.8e-33	79.59	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S3CKK5	5.8e-33	79.59	uncharacterized protein LOC103502033 OS=Cucumis melo OX=3656 GN=LOC103502033 PE=...	[more]
A0A6J1L2X7	2.7e-30	77.55	uncharacterized protein LOC111499927 OS=Cucurbita maxima OX=3661 GN=LOC111499927...	[more]
A0A6J1G777	2.7e-30	77.55	uncharacterized protein LOC111451452 OS=Cucurbita moschata OX=3662 GN=LOC1114514...	[more]

BLAST of MS014218 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G47070.1	1.2e-11	44.21	LOCATED IN: thylakoid, chloroplast thylakoid membrane, chloroplast, chloroplast ...	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR021584	Thylakoid soluble phosphoprotein TSP9	PFAM	PF11493	TSP9	coord: 20..96 e-value: 3.6E-23 score: 82.0
IPR021584	Thylakoid soluble phosphoprotein TSP9	PANTHER	PTHR36370	THYLAKOID SOLUBLE PHOSPHOPROTEIN	coord: 1..98
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 57..98
None	No IPR available	PANTHER	PTHR36370:SF1	THYLAKOID SOLUBLE PHOSPHOPROTEIN	coord: 1..98
IPR037244	Thylakoid soluble phosphoprotein TSP9 superfamily	SUPERFAMILY	144256	TSP9-like	coord: 20..98

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS014218.1	MS014218.1	mRNA