MS013986 (gene) Bitter gourd (TR) v1

Overview


Name	MS013986
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Unknown protein
Location	scaffold607: 1429197 .. 1429577 (-)
RNA-Seq Expression	MS013986
Synteny	MS013986

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTCGATTTCTATTCATCCTCTTCATCTTCGCCAATACATTTCTGAATTCCGTCGTCGTCGTCGGTGCCGAGTTCGGAGCCGCTCCGTCGCCGATCTCGACCGGAGCCGAACCGCCTTCCGCTAGAAAGCTCGGGAAGCACCGGAGTGCGGCGGCTGTTTCTTCCGGCTCGAGTCCGTCTGAAGCGCCGCGGAGCGAAATGAAAGTTCAGGCGACCTCGGCGGCGGCGACGAACGGAGGAGATCATCAGCATCACAATCACAAGGCGAGCGATAAGTCAATCGCCGGCGGCGGCGTGATTTTGGGTGGACTCGCCACCACGTTTCTGGTGGCGATTATCTGCTACATTAGGGCAACGCGGAGATCGAACTCAGAAGTG

mRNA sequence

ATGGCTCGATTTCTATTCATCCTCTTCATCTTCGCCAATACATTTCTGAATTCCGTCGTCGTCGTCGGTGCCGAGTTCGGAGCCGCTCCGTCGCCGATCTCGACCGGAGCCGAACCGCCTTCCGCTAGAAAGCTCGGGAAGCACCGGAGTGCGGCGGCTGTTTCTTCCGGCTCGAGTCCGTCTGAAGCGCCGCGGAGCGAAATGAAAGTTCAGGCGACCTCGGCGGCGGCGACGAACGGAGGAGATCATCAGCATCACAATCACAAGGCGAGCGATAAGTCAATCGCCGGCGGCGGCGTGATTTTGGGTGGACTCGCCACCACGTTTCTGGTGGCGATTATCTGCTACATTAGGGCAACGCGGAGATCGAACTCAGAAGTG

Coding sequence (CDS)

ATGGCTCGATTTCTATTCATCCTCTTCATCTTCGCCAATACATTTCTGAATTCCGTCGTCGTCGTCGGTGCCGAGTTCGGAGCCGCTCCGTCGCCGATCTCGACCGGAGCCGAACCGCCTTCCGCTAGAAAGCTCGGGAAGCACCGGAGTGCGGCGGCTGTTTCTTCCGGCTCGAGTCCGTCTGAAGCGCCGCGGAGCGAAATGAAAGTTCAGGCGACCTCGGCGGCGGCGACGAACGGAGGAGATCATCAGCATCACAATCACAAGGCGAGCGATAAGTCAATCGCCGGCGGCGGCGTGATTTTGGGTGGACTCGCCACCACGTTTCTGGTGGCGATTATCTGCTACATTAGGGCAACGCGGAGATCGAACTCAGAAGTG

Protein sequence

MARFLFILFIFANTFLNSVVVVGAEFGAAPSPISTGAEPPSARKLGKHRSAAAVSSGSSPSEAPRSEMKVQATSAAATNGGDHQHHNHKASDKSIAGGGVILGGLATTFLVAIICYIRATRRSNSEV

Homology

[Close]

BLAST of MS013986 vs. NCBI nr
Match: XP_022151558.1 (uncharacterized protein LOC111019472 [Momordica charantia])

HSP 1 Score: 229.9 bits (585), Expect = 1.2e-56
Identity = 125/127 (98.43%), Postives = 125/127 (98.43%), Query Frame = 0


Query: 1   MARFLFILFIFANTFLNSVVVVGAEFGAAPSPISTGAEPPSARKLGKHRSAAAVSSGSSP 60
           MARFLFILFIFAN FLNSVVVVGAEFGAAPSPISTGAE PSARKLGKHRSAAAVSSGSSP
Sbjct: 1   MARFLFILFIFANAFLNSVVVVGAEFGAAPSPISTGAETPSARKLGKHRSAAAVSSGSSP 60

Query: 61  SEAPRSEMKVQATSAAATNGGDHQHHNHKASDKSIAGGGVILGGLATTFLVAIICYIRAT 120
           SEAPRSEMKVQATSAAATNGGDHQHHNHKASDKSIAGGGVILGGLATTFLVAIICYIRAT
Sbjct: 61  SEAPRSEMKVQATSAAATNGGDHQHHNHKASDKSIAGGGVILGGLATTFLVAIICYIRAT 120

Query: 121 RRSNSEV 128
           RRSNSEV
Sbjct: 121 RRSNSEV 127

[Close]

BLAST of MS013986 vs. NCBI nr
Match: XP_008448528.1 (PREDICTED: uncharacterized protein LOC103490675 [Cucumis melo] >KAA0045126.1 uncharacterized protein E6C27_scaffold30G001250 [Cucumis melo var. makuwa] >TYK23611.1 uncharacterized protein E5676_scaffold500G001230 [Cucumis melo var. makuwa])

HSP 1 Score: 125.6 bits (314), Expect = 3.1e-25
Identity = 83/131 (63.36%), Postives = 92/131 (70.23%), Query Frame = 0


Query: 4   FLFILFIFANTFLNSVVVVGAEFGAAPSPISTGAEPPSARKLGKHRSAAAVSSGSSPSEA 63
           FLF+LFIFAN F +S+        AA +P  T AE PS RKLGKH+S A   + SSP EA
Sbjct: 7   FLFLLFIFANAFFSSL-------AAAAAPPPTSAESPSLRKLGKHQSTAI--AFSSPIEA 66

Query: 64  PRSEMKVQATSAA-------ATNGGDHQHHNHKASDKSIAGGGVILGGLATTFLVAIICY 123
           PRSEMKVQ TSAA       A   G+H H  HK+ DKSIAGGGVILGGLATTFLVAIICY
Sbjct: 67  PRSEMKVQGTSAASGGESGNAVQLGNHDH--HKSRDKSIAGGGVILGGLATTFLVAIICY 126

Query: 124 IRATRRSNSEV 128
           IRATRR  SE+
Sbjct: 127 IRATRRQKSEL 126

[Close]

BLAST of MS013986 vs. NCBI nr
Match: KAG6603622.1 (hypothetical protein SDJN03_04231, partial [Cucurbita argyrosperma subsp. sororia] >KAG7033809.1 hypothetical protein SDJN02_03534, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 124.8 bits (312), Expect = 5.4e-25
Identity = 80/126 (63.49%), Postives = 87/126 (69.05%), Query Frame = 0


Query: 1   MARFLFILFIFANTFLNSVVVVGAEFGAAPSPISTGAEPPSARKLGKHRSAAAVSSGSSP 60
           MA FLF+LFIFAN  L SV V     GAAP P  T AEPPS RKLGKH S A V   SSP
Sbjct: 23  MAPFLFLLFIFANALLGSVAV-----GAAPPP--TAAEPPSGRKLGKHHSTAVVF--SSP 82

Query: 61  SEAPRSEMKVQATSAAATNGGD--HQHHNHKASDKSIAGGGVILGGLATTFLVAIICYIR 120
           SEAPRSE KV   +   T        H +HK+ DKS+AGGGVILGGLATTFLVAI+CYIR
Sbjct: 83  SEAPRSEKKVSTANDGGTGNEIELENHEHHKSIDKSVAGGGVILGGLATTFLVAIVCYIR 139

Query: 121 ATRRSN 125
           ATRR +
Sbjct: 143 ATRRQS 139

[Close]

BLAST of MS013986 vs. NCBI nr
Match: KGN54308.1 (hypothetical protein Csa_017945 [Cucumis sativus])

HSP 1 Score: 120.2 bits (300), Expect = 1.3e-23
Identity = 79/131 (60.31%), Postives = 90/131 (68.70%), Query Frame = 0


Query: 4   FLFILFIFANTFLNSVVVVGAEFGAAPSPISTGAEPPSARKLGKHRSAAAVSSGSSPSEA 63
           FLF+LFIFAN   +S+        AA +P  T AE PS RKLGKH+S A   + SSP+EA
Sbjct: 5   FLFLLFIFANALFSSL-------AAAAAPPPTSAESPSVRKLGKHQSTAI--AFSSPTEA 64

Query: 64  PRSEMKVQATSAA-------ATNGGDHQHHNHKASDKSIAGGGVILGGLATTFLVAIICY 123
           PRS MKVQ TS A       A   G+H H  HK+ DKSIAGGGVILGGLATTFLVA+ICY
Sbjct: 65  PRSVMKVQGTSGASGGESGNAVELGNHDH--HKSRDKSIAGGGVILGGLATTFLVAVICY 124

Query: 124 IRATRRSNSEV 128
           IRATRR  SE+
Sbjct: 125 IRATRRQKSEL 124

[Close]

BLAST of MS013986 vs. NCBI nr
Match: KAG6595353.1 (hypothetical protein SDJN03_11906, partial [Cucurbita argyrosperma subsp. sororia] >KAG7027361.1 hypothetical protein SDJN02_11373, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 113.2 bits (282), Expect = 1.6e-21
Identity = 75/127 (59.06%), Postives = 83/127 (65.35%), Query Frame = 0


Query: 1   MARFLFILFIFANTFLNSVVVVGAEFGAAPSPISTGAEPPSARKLGKHRSAAAVSSGSSP 60
           MA FLF+LFIFA+  L+S  V               AEPPSARKLG H SAAAVS  SSP
Sbjct: 1   MAPFLFLLFIFASALLDSAAV--------------AAEPPSARKLGNHWSAAAVS--SSP 60

Query: 61  SEAPRSEMKVQATSAAATNGGDHQHHNHKASDKSIAGGGVILGGLATTFLVAIICYIRAT 120
           SEAP+SE+KV                +HK+ D SIAGGGVILGGLATTF VAIICYIRAT
Sbjct: 61  SEAPQSEIKVL-----------ENREHHKSRDMSIAGGGVILGGLATTFFVAIICYIRAT 100

Query: 121 RRSNSEV 128
           +R NSEV
Sbjct: 121 KRQNSEV 100

[Close]

BLAST of MS013986 vs. ExPASy TrEMBL
Match: A0A6J1DCH7 (uncharacterized protein LOC111019472 OS=Momordica charantia OX=3673 GN=LOC111019472 PE=4 SV=1)

HSP 1 Score: 229.9 bits (585), Expect = 5.7e-57
Identity = 125/127 (98.43%), Postives = 125/127 (98.43%), Query Frame = 0


Query: 1   MARFLFILFIFANTFLNSVVVVGAEFGAAPSPISTGAEPPSARKLGKHRSAAAVSSGSSP 60
           MARFLFILFIFAN FLNSVVVVGAEFGAAPSPISTGAE PSARKLGKHRSAAAVSSGSSP
Sbjct: 1   MARFLFILFIFANAFLNSVVVVGAEFGAAPSPISTGAETPSARKLGKHRSAAAVSSGSSP 60

Query: 61  SEAPRSEMKVQATSAAATNGGDHQHHNHKASDKSIAGGGVILGGLATTFLVAIICYIRAT 120
           SEAPRSEMKVQATSAAATNGGDHQHHNHKASDKSIAGGGVILGGLATTFLVAIICYIRAT
Sbjct: 61  SEAPRSEMKVQATSAAATNGGDHQHHNHKASDKSIAGGGVILGGLATTFLVAIICYIRAT 120

Query: 121 RRSNSEV 128
           RRSNSEV
Sbjct: 121 RRSNSEV 127

[Close]

BLAST of MS013986 vs. ExPASy TrEMBL
Match: A0A5A7TSM2 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold500G001230 PE=4 SV=1)

HSP 1 Score: 125.6 bits (314), Expect = 1.5e-25
Identity = 83/131 (63.36%), Postives = 92/131 (70.23%), Query Frame = 0


Query: 4   FLFILFIFANTFLNSVVVVGAEFGAAPSPISTGAEPPSARKLGKHRSAAAVSSGSSPSEA 63
           FLF+LFIFAN F +S+        AA +P  T AE PS RKLGKH+S A   + SSP EA
Sbjct: 7   FLFLLFIFANAFFSSL-------AAAAAPPPTSAESPSLRKLGKHQSTAI--AFSSPIEA 66

Query: 64  PRSEMKVQATSAA-------ATNGGDHQHHNHKASDKSIAGGGVILGGLATTFLVAIICY 123
           PRSEMKVQ TSAA       A   G+H H  HK+ DKSIAGGGVILGGLATTFLVAIICY
Sbjct: 67  PRSEMKVQGTSAASGGESGNAVQLGNHDH--HKSRDKSIAGGGVILGGLATTFLVAIICY 126

Query: 124 IRATRRSNSEV 128
           IRATRR  SE+
Sbjct: 127 IRATRRQKSEL 126

[Close]

BLAST of MS013986 vs. ExPASy TrEMBL
Match: A0A1S3BJV8 (uncharacterized protein LOC103490675 OS=Cucumis melo OX=3656 GN=LOC103490675 PE=4 SV=1)

HSP 1 Score: 125.6 bits (314), Expect = 1.5e-25
Identity = 83/131 (63.36%), Postives = 92/131 (70.23%), Query Frame = 0


Query: 4   FLFILFIFANTFLNSVVVVGAEFGAAPSPISTGAEPPSARKLGKHRSAAAVSSGSSPSEA 63
           FLF+LFIFAN F +S+        AA +P  T AE PS RKLGKH+S A   + SSP EA
Sbjct: 7   FLFLLFIFANAFFSSL-------AAAAAPPPTSAESPSLRKLGKHQSTAI--AFSSPIEA 66

Query: 64  PRSEMKVQATSAA-------ATNGGDHQHHNHKASDKSIAGGGVILGGLATTFLVAIICY 123
           PRSEMKVQ TSAA       A   G+H H  HK+ DKSIAGGGVILGGLATTFLVAIICY
Sbjct: 67  PRSEMKVQGTSAASGGESGNAVQLGNHDH--HKSRDKSIAGGGVILGGLATTFLVAIICY 126

Query: 124 IRATRRSNSEV 128
           IRATRR  SE+
Sbjct: 127 IRATRRQKSEL 126

[Close]

BLAST of MS013986 vs. ExPASy TrEMBL
Match: A0A0A0KXQ0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G303070 PE=4 SV=1)

HSP 1 Score: 120.2 bits (300), Expect = 6.4e-24
Identity = 79/131 (60.31%), Postives = 90/131 (68.70%), Query Frame = 0


Query: 4   FLFILFIFANTFLNSVVVVGAEFGAAPSPISTGAEPPSARKLGKHRSAAAVSSGSSPSEA 63
           FLF+LFIFAN   +S+        AA +P  T AE PS RKLGKH+S A   + SSP+EA
Sbjct: 5   FLFLLFIFANALFSSL-------AAAAAPPPTSAESPSVRKLGKHQSTAI--AFSSPTEA 64

Query: 64  PRSEMKVQATSAA-------ATNGGDHQHHNHKASDKSIAGGGVILGGLATTFLVAIICY 123
           PRS MKVQ TS A       A   G+H H  HK+ DKSIAGGGVILGGLATTFLVA+ICY
Sbjct: 65  PRSVMKVQGTSGASGGESGNAVELGNHDH--HKSRDKSIAGGGVILGGLATTFLVAVICY 124

Query: 124 IRATRRSNSEV 128
           IRATRR  SE+
Sbjct: 125 IRATRRQKSEL 124

[Close]

BLAST of MS013986 vs. ExPASy TrEMBL
Match: A0A1R3JR29 (Uncharacterized protein OS=Corchorus olitorius OX=93759 GN=COLO4_14698 PE=4 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 6.6e-13
Identity = 65/147 (44.22%), Postives = 80/147 (54.42%), Query Frame = 0


Query: 4   FLFILFIFANTF--LNSVVVVGAEFGAAPSPISTGAEPPSARKLGKHRSAAAVSSG---- 63
           FL I  I  N F  + S      +   AP+P    A PPS RKLGKH+  A V       
Sbjct: 5   FLLICLILVNVFVAMASETAQTHQNAQAPAPYKAEA-PPSIRKLGKHKHHAKVVKNFGGE 64

Query: 64  ---SSPSEAPRSEMKVQ-----ATSAAATNGGDH-----------QHHNHKASDKSIAGG 123
              +SPSEAP++E +         SAA  N G+H           +HH++ + DKS+AGG
Sbjct: 65  PPVTSPSEAPQTEKENHPKDHFEASAAEPNNGEHVNVKGQAVHLEKHHHNNSFDKSMAGG 124

Query: 124 GVILGGLATTFLVAIICYIRATRRSNS 126
           GVILGGLATTFLVA+ CYIRAT R  S
Sbjct: 125 GVILGGLATTFLVAVFCYIRATGRHKS 150

[Close]

BLAST of MS013986 vs. TAIR 10
Match: AT3G09280.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: root; Has 31 Blast hits to 31 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 31; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 65.1 bits (157), Expect = 4.7e-11
Identity = 40/89 (44.94%), Postives = 52/89 (58.43%), Query Frame = 0


Query: 34  STGAEPPSARKLGKHRSAAAVSSGSSPSEAPRSEMKVQATSAAATNGGDHQHHNHKASDK 93
           S+ AEPP+ RKLG+H             E P  E   +A   +       + H+H   ++
Sbjct: 22  SSEAEPPATRKLGRH-------------EWPGEE--AEAPEVSHLEETVRRGHHHSTVER 81

Query: 94  SIAGGGVILGGLATTFLVAIICYIRATRR 123
           S+AGGGVILGGLATTFLV + CYIRATR+
Sbjct: 82  SVAGGGVILGGLATTFLVVVFCYIRATRK 95

The following BLAST results are available for this feature:

BLAST of MS013986 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022151558.1	1.2e-56	98.43	uncharacterized protein LOC111019472 [Momordica charantia]	[more]
XP_008448528.1	3.1e-25	63.36	PREDICTED: uncharacterized protein LOC103490675 [Cucumis melo] >KAA0045126.1 unc...	[more]
KAG6603622.1	5.4e-25	63.49	hypothetical protein SDJN03_04231, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KGN54308.1	1.3e-23	60.31	hypothetical protein Csa_017945 [Cucumis sativus]	[more]
KAG6595353.1	1.6e-21	59.06	hypothetical protein SDJN03_11906, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of MS013986 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MS013986 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DCH7	5.7e-57	98.43	uncharacterized protein LOC111019472 OS=Momordica charantia OX=3673 GN=LOC111019...	[more]
A0A5A7TSM2	1.5e-25	63.36	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S3BJV8	1.5e-25	63.36	uncharacterized protein LOC103490675 OS=Cucumis melo OX=3656 GN=LOC103490675 PE=...	[more]
A0A0A0KXQ0	6.4e-24	60.31	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G303070 PE=4 SV=1	[more]
A0A1R3JR29	6.6e-13	44.22	Uncharacterized protein OS=Corchorus olitorius OX=93759 GN=COLO4_14698 PE=4 SV=1	[more]

BLAST of MS013986 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G09280.1	4.7e-11	44.94	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 52..81
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 30..93
None	No IPR available	PANTHER	PTHR34558	EXPRESSED PROTEIN	coord: 1..126
None	No IPR available	PANTHER	PTHR34558:SF9	F3L24.15 PROTEIN	coord: 1..126

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS013986.1	MS013986.1	mRNA