MS013947 (gene) Bitter gourd (TR) v1

Overview
NameMS013947
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Descriptiontranscription factor DIVARICATA-like
Locationscaffold607: 1151723 .. 1152652 (-)
RNA-Seq ExpressionMS013947
SyntenyMS013947
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
TCGGCCATGGAATTTCTCTCGCCAGCTTCTTACCTTCGAAATTCCTACTGGCTGTTTCAAGAAACCAAAGGAGCCCAATGGACTCCCGAGGAAAACAAACGGTTCGAGAATGCTCTGGCCCTGTACGATGAGCAGACTTCCGATCGGTGGCTGAAAGTCGCTGCCATGATTCCCGGAAAAACCATCGGCGATGTGATGAAACAGTACCAAGAACTGGAGGAAGACGTCAGTGATATAGAGGCCGGCCTGATTCCGATTCGTGGCTACTCCAATCGCCACTCCTTCACATTGGATCGAGCCGATAGCAGCCATGGATTCGATGATTTGAGCCATTTCTATGGCTCAGGAGTTAAGAGAGGAACCTCAAATAAACCTTCTGATCATGAAAGGAAGAAAGGAATTCCATGGACTGAAGAAGAACACAGGTAAATTACTGAATTTCATAGCTCTGTTCTTTCCTCTGTTATAACTGATGTGAAAATCCTTTAGAATTTTGGATTCAAACTGTAGCGATCGAGTTTCTCGAAACCAAATGTTGTAGAAGTAGACGATTGTTCAGTATTTTGCTTAGCATTTTGTCCACTGTCTTGATTGAGACATTGTGCAAATGAATATAGAAGTTCCATGTCCTTTTCAGTTGTGTGTGTGTTTTTTTATGGTATCTTATGGCTCTGCTGCTTTTGATTTTGGGTGTTTGTTGATTAAAACCACAGGCAATTTCTGATGGGTCTTAAAAAATACGGTAAAGGTGACTGGAGAAACATATCTCGCAATTTCGTTACGACGAGAACACCGACGCAAGTCGCCAGTCATGCTCAGAAGTACTTCATAAGACAGCTGACCGGAGGGAAGGACAAGCGAAGATCGAGCATCCACGACATCACGACCGTCAATCTTCCAGATGCTAAATCGCCATCGGGGGACAGTAAC

mRNA sequence

TCGGCCATGGAATTTCTCTCGCCAGCTTCTTACCTTCGAAATTCCTACTGGCTGTTTCAAGAAACCAAAGGAGCCCAATGGACTCCCGAGGAAAACAAACGGTTCGAGAATGCTCTGGCCCTGTACGATGAGCAGACTTCCGATCGGTGGCTGAAAGTCGCTGCCATGATTCCCGGAAAAACCATCGGCGATGTGATGAAACAGTACCAAGAACTGGAGGAAGACGTCAGTGATATAGAGGCCGGCCTGATTCCGATTCGTGGCTACTCCAATCGCCACTCCTTCACATTGGATCGAGCCGATAGCAGCCATGGATTCGATGATTTGAGCCATTTCTATGGCTCAGGAGTTAAGAGAGGAACCTCAAATAAACCTTCTGATCATGAAAGGAAGAAAGGAATTCCATGGACTGAAGAAGAACACAGGCAATTTCTGATGGGTCTTAAAAAATACGGTAAAGGTGACTGGAGAAACATATCTCGCAATTTCGTTACGACGAGAACACCGACGCAAGTCGCCAGTCATGCTCAGAAGTACTTCATAAGACAGCTGACCGGAGGGAAGGACAAGCGAAGATCGAGCATCCACGACATCACGACCGTCAATCTTCCAGATGCTAAATCGCCATCGGGGGACAGTAAC

Coding sequence (CDS)

TCGGCCATGGAATTTCTCTCGCCAGCTTCTTACCTTCGAAATTCCTACTGGCTGTTTCAAGAAACCAAAGGAGCCCAATGGACTCCCGAGGAAAACAAACGGTTCGAGAATGCTCTGGCCCTGTACGATGAGCAGACTTCCGATCGGTGGCTGAAAGTCGCTGCCATGATTCCCGGAAAAACCATCGGCGATGTGATGAAACAGTACCAAGAACTGGAGGAAGACGTCAGTGATATAGAGGCCGGCCTGATTCCGATTCGTGGCTACTCCAATCGCCACTCCTTCACATTGGATCGAGCCGATAGCAGCCATGGATTCGATGATTTGAGCCATTTCTATGGCTCAGGAGTTAAGAGAGGAACCTCAAATAAACCTTCTGATCATGAAAGGAAGAAAGGAATTCCATGGACTGAAGAAGAACACAGGCAATTTCTGATGGGTCTTAAAAAATACGGTAAAGGTGACTGGAGAAACATATCTCGCAATTTCGTTACGACGAGAACACCGACGCAAGTCGCCAGTCATGCTCAGAAGTACTTCATAAGACAGCTGACCGGAGGGAAGGACAAGCGAAGATCGAGCATCCACGACATCACGACCGTCAATCTTCCAGATGCTAAATCGCCATCGGGGGACAGTAAC

Protein sequence

SAMEFLSPASYLRNSYWLFQETKGAQWTPEENKRFENALALYDEQTSDRWLKVAAMIPGKTIGDVMKQYQELEEDVSDIEAGLIPIRGYSNRHSFTLDRADSSHGFDDLSHFYGSGVKRGTSNKPSDHERKKGIPWTEEEHRQFLMGLKKYGKGDWRNISRNFVTTRTPTQVASHAQKYFIRQLTGGKDKRRSSIHDITTVNLPDAKSPSGDSN
Homology
BLAST of MS013947 vs. NCBI nr
Match: XP_022151479.1 (transcription factor DIVARICATA-like [Momordica charantia])

HSP 1 Score: 438.7 bits (1127), Expect = 2.8e-119
Identity = 212/212 (100.00%), Postives = 212/212 (100.00%), Query Frame = 0

Query: 3   MEFLSPASYLRNSYWLFQETKGAQWTPEENKRFENALALYDEQTSDRWLKVAAMIPGKTI 62
           MEFLSPASYLRNSYWLFQETKGAQWTPEENKRFENALALYDEQTSDRWLKVAAMIPGKTI
Sbjct: 1   MEFLSPASYLRNSYWLFQETKGAQWTPEENKRFENALALYDEQTSDRWLKVAAMIPGKTI 60

Query: 63  GDVMKQYQELEEDVSDIEAGLIPIRGYSNRHSFTLDRADSSHGFDDLSHFYGSGVKRGTS 122
           GDVMKQYQELEEDVSDIEAGLIPIRGYSNRHSFTLDRADSSHGFDDLSHFYGSGVKRGTS
Sbjct: 61  GDVMKQYQELEEDVSDIEAGLIPIRGYSNRHSFTLDRADSSHGFDDLSHFYGSGVKRGTS 120

Query: 123 NKPSDHERKKGIPWTEEEHRQFLMGLKKYGKGDWRNISRNFVTTRTPTQVASHAQKYFIR 182
           NKPSDHERKKGIPWTEEEHRQFLMGLKKYGKGDWRNISRNFVTTRTPTQVASHAQKYFIR
Sbjct: 121 NKPSDHERKKGIPWTEEEHRQFLMGLKKYGKGDWRNISRNFVTTRTPTQVASHAQKYFIR 180

Query: 183 QLTGGKDKRRSSIHDITTVNLPDAKSPSGDSN 215
           QLTGGKDKRRSSIHDITTVNLPDAKSPSGDSN
Sbjct: 181 QLTGGKDKRRSSIHDITTVNLPDAKSPSGDSN 212

BLAST of MS013947 vs. NCBI nr
Match: XP_038883537.1 (transcription factor DIVARICATA-like [Benincasa hispida])

HSP 1 Score: 412.5 bits (1059), Expect = 2.2e-111
Identity = 198/212 (93.40%), Postives = 203/212 (95.75%), Query Frame = 0

Query: 3   MEFLSPASYLRNSYWLFQETKGAQWTPEENKRFENALALYDEQTSDRWLKVAAMIPGKTI 62
           MEFLSPASYLRNS WLFQETKG QWTPEENKRFENALALYDE TSDRW KVAAMIPGKTI
Sbjct: 1   MEFLSPASYLRNSNWLFQETKGTQWTPEENKRFENALALYDEDTSDRWFKVAAMIPGKTI 60

Query: 63  GDVMKQYQELEEDVSDIEAGLIPIRGYSNRHSFTLDRADSSHGFDDLSHFYGSGVKRGTS 122
           GDV+KQYQELEEDVSDIEAGLIPIRGY+NRHSFTL+R DSSHGFD LSHFYGSGVKRGTS
Sbjct: 61  GDVIKQYQELEEDVSDIEAGLIPIRGYANRHSFTLERVDSSHGFDGLSHFYGSGVKRGTS 120

Query: 123 NKPSDHERKKGIPWTEEEHRQFLMGLKKYGKGDWRNISRNFVTTRTPTQVASHAQKYFIR 182
            +PSDHERKKGIPWTEEEHRQFLMGLKKYGKGDWRNISRNFVTTRTPTQVASHAQKYFIR
Sbjct: 121 TRPSDHERKKGIPWTEEEHRQFLMGLKKYGKGDWRNISRNFVTTRTPTQVASHAQKYFIR 180

Query: 183 QLTGGKDKRRSSIHDITTVNLPDAKSPSGDSN 215
           QL+GGKDKRRSSIHDITTVNLPD KSP GDSN
Sbjct: 181 QLSGGKDKRRSSIHDITTVNLPDMKSPVGDSN 212

BLAST of MS013947 vs. NCBI nr
Match: XP_004147889.1 (transcription factor DIVARICATA [Cucumis sativus] >KGN54360.1 hypothetical protein Csa_017923 [Cucumis sativus])

HSP 1 Score: 412.5 bits (1059), Expect = 2.2e-111
Identity = 198/212 (93.40%), Postives = 203/212 (95.75%), Query Frame = 0

Query: 3   MEFLSPASYLRNSYWLFQETKGAQWTPEENKRFENALALYDEQTSDRWLKVAAMIPGKTI 62
           MEFLSPASYLRNS WLFQETKG QWTPEENKRFENALALYDE TSDRW KVAAMIPGKTI
Sbjct: 1   MEFLSPASYLRNSNWLFQETKGTQWTPEENKRFENALALYDEDTSDRWFKVAAMIPGKTI 60

Query: 63  GDVMKQYQELEEDVSDIEAGLIPIRGYSNRHSFTLDRADSSHGFDDLSHFYGSGVKRGTS 122
           GDV+KQYQELEEDVSDIEAGLIPIRGY+NRHSFTL+R DSSHGFD LSHFYGSGVKRGTS
Sbjct: 61  GDVIKQYQELEEDVSDIEAGLIPIRGYANRHSFTLERVDSSHGFDGLSHFYGSGVKRGTS 120

Query: 123 NKPSDHERKKGIPWTEEEHRQFLMGLKKYGKGDWRNISRNFVTTRTPTQVASHAQKYFIR 182
            +PSDHERKKGIPWTEEEHRQFLMGLKKYGKGDWRNISRNFVTTRTPTQVASHAQKYFIR
Sbjct: 121 TRPSDHERKKGIPWTEEEHRQFLMGLKKYGKGDWRNISRNFVTTRTPTQVASHAQKYFIR 180

Query: 183 QLTGGKDKRRSSIHDITTVNLPDAKSPSGDSN 215
           QL+GGKDKRRSSIHDITTVNLPD KSP GDSN
Sbjct: 181 QLSGGKDKRRSSIHDITTVNLPDMKSPLGDSN 212

BLAST of MS013947 vs. NCBI nr
Match: XP_008449196.1 (PREDICTED: transcription factor DIVARICATA-like [Cucumis melo] >KAA0045056.1 transcription factor DIVARICATA-like [Cucumis melo var. makuwa] >TYJ96271.1 transcription factor DIVARICATA-like [Cucumis melo var. makuwa])

HSP 1 Score: 411.0 bits (1055), Expect = 6.3e-111
Identity = 197/212 (92.92%), Postives = 202/212 (95.28%), Query Frame = 0

Query: 3   MEFLSPASYLRNSYWLFQETKGAQWTPEENKRFENALALYDEQTSDRWLKVAAMIPGKTI 62
           MEFLSPASYLRNS WLFQETKG QWTPEENKRFENALALYDE TSDRW KVAAMIPGKTI
Sbjct: 1   MEFLSPASYLRNSNWLFQETKGTQWTPEENKRFENALALYDEDTSDRWFKVAAMIPGKTI 60

Query: 63  GDVMKQYQELEEDVSDIEAGLIPIRGYSNRHSFTLDRADSSHGFDDLSHFYGSGVKRGTS 122
           GDV+KQYQELEEDVSDIEAGLIPIRGY+NRHSFTL+R DSSHGFD LSHFYGSGVKRGTS
Sbjct: 61  GDVIKQYQELEEDVSDIEAGLIPIRGYANRHSFTLERVDSSHGFDGLSHFYGSGVKRGTS 120

Query: 123 NKPSDHERKKGIPWTEEEHRQFLMGLKKYGKGDWRNISRNFVTTRTPTQVASHAQKYFIR 182
            +PSDHERKKGIPWTEEEHRQFLMGLKKYGKGDWRNISRNFVTTRTPTQVASHAQKYFIR
Sbjct: 121 TRPSDHERKKGIPWTEEEHRQFLMGLKKYGKGDWRNISRNFVTTRTPTQVASHAQKYFIR 180

Query: 183 QLTGGKDKRRSSIHDITTVNLPDAKSPSGDSN 215
           QL+GGKDKRRSSIHDITTVNLPD KSP GD N
Sbjct: 181 QLSGGKDKRRSSIHDITTVNLPDVKSPLGDCN 212

BLAST of MS013947 vs. NCBI nr
Match: XP_023517380.1 (transcription factor DIVARICATA-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 404.1 bits (1037), Expect = 7.7e-109
Identity = 195/212 (91.98%), Postives = 198/212 (93.40%), Query Frame = 0

Query: 3   MEFLSPASYLRNSYWLFQETKGAQWTPEENKRFENALALYDEQTSDRWLKVAAMIPGKTI 62
           MEFLSPASYLRNS WLFQETK  QWTPEENKRFENALALYDE TSDRWLKVAAMIPGKTI
Sbjct: 1   MEFLSPASYLRNSNWLFQETKETQWTPEENKRFENALALYDEDTSDRWLKVAAMIPGKTI 60

Query: 63  GDVMKQYQELEEDVSDIEAGLIPIRGYSNRHSFTLDRADSSHGFDDLSHFYGSGVKRGTS 122
           GDV+K YQELEEDV DIEAGLIPIRGY NRHSFTL+R DSSHGFD LSHFYG+G K GTS
Sbjct: 61  GDVVKHYQELEEDVCDIEAGLIPIRGYDNRHSFTLERVDSSHGFDGLSHFYGAGFKTGTS 120

Query: 123 NKPSDHERKKGIPWTEEEHRQFLMGLKKYGKGDWRNISRNFVTTRTPTQVASHAQKYFIR 182
             PSDHERKKGIPWTEEEHRQFLMGLKKYGKGDWRNISRNFVTTRTPTQVASHAQKYFIR
Sbjct: 121 TTPSDHERKKGIPWTEEEHRQFLMGLKKYGKGDWRNISRNFVTTRTPTQVASHAQKYFIR 180

Query: 183 QLTGGKDKRRSSIHDITTVNLPDAKSPSGDSN 215
           QLTGGKDKRRSSIHDITTVNLPD KSPSGDSN
Sbjct: 181 QLTGGKDKRRSSIHDITTVNLPDMKSPSGDSN 212

BLAST of MS013947 vs. ExPASy Swiss-Prot
Match: Q8S9H7 (Transcription factor DIVARICATA OS=Antirrhinum majus OX=4151 GN=DIVARICATA PE=2 SV=1)

HSP 1 Score: 292.4 bits (747), Expect = 4.3e-78
Identity = 138/212 (65.09%), Postives = 170/212 (80.19%), Query Frame = 0

Query: 3   MEFLSPASYLRNSYWLFQETKG-AQWTPEENKRFENALALYDEQTSDRWLKVAAMIPGKT 62
           ME L+P+SY  +S W  +E++   +WT  ENK FENALA++DE T +RW +VA  +PGKT
Sbjct: 1   MEILAPSSYFSSSSWFLEESRSTTRWTAAENKAFENALAVFDENTPNRWERVAERVPGKT 60

Query: 63  IGDVMKQYQELEEDVSDIEAGLIPIRGYSNRHSFTLDRADSSHGFDDLSHFYGSGVKRGT 122
           +GDVM+QY+ELE+DVS IEAG +P+ GYS    FTL+   S HGFD     YG+G ++ +
Sbjct: 61  VGDVMRQYKELEDDVSSIEAGFVPVPGYSTSSPFTLEWG-SGHGFDGFKQSYGTGGRKSS 120

Query: 123 SNKPSDHERKKGIPWTEEEHRQFLMGLKKYGKGDWRNISRNFVTTRTPTQVASHAQKYFI 182
           S +PS+ ERKKG+PWTEEEH+ FLMGLKKYGKGDWRNISRNFV TRTPTQVASHAQKYFI
Sbjct: 121 SGRPSEQERKKGVPWTEEEHKLFLMGLKKYGKGDWRNISRNFVITRTPTQVASHAQKYFI 180

Query: 183 RQLTGGKDKRRSSIHDITTVNLPDAKSPSGDS 214
           RQL+GGKDKRR+SIHDITTVNL D ++PS D+
Sbjct: 181 RQLSGGKDKRRASIHDITTVNLSDNQTPSPDN 211

BLAST of MS013947 vs. ExPASy Swiss-Prot
Match: Q9FNN6 (Transcription factor SRM1 OS=Arabidopsis thaliana OX=3702 GN=SRM1 PE=1 SV=1)

HSP 1 Score: 184.9 bits (468), Expect = 9.7e-46
Identity = 95/192 (49.48%), Postives = 128/192 (66.67%), Query Frame = 0

Query: 24  GAQWTPEENKRFENALALYDEQTSDRWLKVAAMIPGKTIGDVMKQYQELEEDVSDIEAGL 83
           G+ W+ E++  FE ALA   +++ +RW K+AA +PGK++  + + Y+ L EDV+ IE+G 
Sbjct: 9   GSVWSREDDIAFERALANNTDESEERWEKIAADVPGKSVEQIKEHYELLVEDVTRIESGC 68

Query: 84  IPIRGYSNRHSFTLDRADSSHGFDDLSHFYGSGVKRGTSNK----PSDHERKKGIPWTEE 143
           +P+  Y +      + ++   G +  S   G     G SN+     SD ER+KGI WTE+
Sbjct: 69  VPLPAYGSP-----EGSNGHAGDEGASSKKGGNSHAGESNQAGKSKSDQERRKGIAWTED 128

Query: 144 EHRQFLMGLKKYGKGDWRNISRNFVTTRTPTQVASHAQKYFIRQLTGGKDKRRSSIHDIT 203
           EHR FL+GL KYGKGDWR+ISRNFV TRTPTQVASHAQKYFIR  +  KD+RRSSIHDIT
Sbjct: 129 EHRLFLLGLDKYGKGDWRSISRNFVVTRTPTQVASHAQKYFIRLNSMNKDRRRSSIHDIT 188

Query: 204 TVNLPDAKSPSG 212
           +V   D  +P G
Sbjct: 189 SVGNADVSTPQG 195

BLAST of MS013947 vs. ExPASy Swiss-Prot
Match: B8A9B2 (Transcription factor MYBS1 OS=Oryza sativa subsp. indica OX=39946 GN=MYBS1 PE=3 SV=1)

HSP 1 Score: 162.2 bits (409), Expect = 6.7e-39
Identity = 93/199 (46.73%), Postives = 120/199 (60.30%), Query Frame = 0

Query: 25  AQWTPEENKRFENALALY--------DEQTSDRWLKVAAMIPG-KTIGDVMKQYQELEED 84
           A WT E++K FENALA               D +  +AA +PG ++  +V + Y+ L ED
Sbjct: 16  AAWTREDDKAFENALAACAAPPPADGGAPDDDWFAALAASVPGARSAEEVRRHYEALVED 75

Query: 85  VSDIEAGLIPIRGYSNRHS---------FTLDRADSSHGFDDLSHFYGSGVKRGTSNKPS 144
           V+ I+AG +P+  Y+   S               D  H  D+     G G   G S   +
Sbjct: 76  VAAIDAGRVPLPRYAGEESAAPPDGAGAAAAASKDGGHRRDERKG-GGGGYDGGKSCSKA 135

Query: 145 DHERKKGIPWTEEEHRQFLMGLKKYGKGDWRNISRNFVTTRTPTQVASHAQKYFIRQLTG 204
           + ER+KGIPWTEEEHR FL+GL K+GKGDWR+ISRNFV +RTPTQVASHAQKYFIR  + 
Sbjct: 136 EQERRKGIPWTEEEHRLFLLGLDKFGKGDWRSISRNFVISRTPTQVASHAQKYFIRLNSM 195

Query: 205 GKDKRRSSIHDITTVNLPD 206
            +D+RRSSIHDIT+V   D
Sbjct: 196 NRDRRRSSIHDITSVTAGD 213

BLAST of MS013947 vs. ExPASy Swiss-Prot
Match: Q8LH59 (Transcription factor MYBS1 OS=Oryza sativa subsp. japonica OX=39947 GN=MYBS1 PE=1 SV=1)

HSP 1 Score: 162.2 bits (409), Expect = 6.7e-39
Identity = 93/199 (46.73%), Postives = 120/199 (60.30%), Query Frame = 0

Query: 25  AQWTPEENKRFENALALY--------DEQTSDRWLKVAAMIPG-KTIGDVMKQYQELEED 84
           A WT E++K FENALA               D +  +AA +PG ++  +V + Y+ L ED
Sbjct: 16  AAWTREDDKAFENALAACAAPPPADGGAPDDDWFAALAASVPGARSAEEVRRHYEALVED 75

Query: 85  VSDIEAGLIPIRGYSNRHS---------FTLDRADSSHGFDDLSHFYGSGVKRGTSNKPS 144
           V+ I+AG +P+  Y+   S               D  H  D+     G G   G S   +
Sbjct: 76  VAAIDAGRVPLPRYAGEESAAPPDGAGAAAAASKDGGHRRDERKG-GGGGYDGGKSCSKA 135

Query: 145 DHERKKGIPWTEEEHRQFLMGLKKYGKGDWRNISRNFVTTRTPTQVASHAQKYFIRQLTG 204
           + ER+KGIPWTEEEHR FL+GL K+GKGDWR+ISRNFV +RTPTQVASHAQKYFIR  + 
Sbjct: 136 EQERRKGIPWTEEEHRLFLLGLDKFGKGDWRSISRNFVISRTPTQVASHAQKYFIRLNSM 195

Query: 205 GKDKRRSSIHDITTVNLPD 206
            +D+RRSSIHDIT+V   D
Sbjct: 196 NRDRRRSSIHDITSVTAGD 213

BLAST of MS013947 vs. ExPASy Swiss-Prot
Match: Q9LVS0 (Transcription factor KUA1 OS=Arabidopsis thaliana OX=3702 GN=KUA1 PE=1 SV=1)

HSP 1 Score: 118.2 bits (295), Expect = 1.1e-25
Identity = 56/80 (70.00%), Postives = 63/80 (78.75%), Query Frame = 0

Query: 126 SDHERKKGIPWTEEEHRQFLMGLKKYGKGDWRNISRNFVTTRTPTQVASHAQKYFIRQLT 185
           S  ERKKG PWTEEEHR FL+GL+K GKGDWR ISRN+VTTRTPTQVASHAQKYFIRQ  
Sbjct: 88  SSRERKKGTPWTEEEHRMFLLGLQKLGKGDWRGISRNYVTTRTPTQVASHAQKYFIRQSN 147

Query: 186 GGKDKRRSSIHDITTVNLPD 206
             + KRRSS+ D+    + D
Sbjct: 148 VSRRKRRSSLFDMVPDEVGD 167

BLAST of MS013947 vs. ExPASy TrEMBL
Match: A0A6J1DD76 (transcription factor DIVARICATA-like OS=Momordica charantia OX=3673 GN=LOC111019411 PE=4 SV=1)

HSP 1 Score: 438.7 bits (1127), Expect = 1.4e-119
Identity = 212/212 (100.00%), Postives = 212/212 (100.00%), Query Frame = 0

Query: 3   MEFLSPASYLRNSYWLFQETKGAQWTPEENKRFENALALYDEQTSDRWLKVAAMIPGKTI 62
           MEFLSPASYLRNSYWLFQETKGAQWTPEENKRFENALALYDEQTSDRWLKVAAMIPGKTI
Sbjct: 1   MEFLSPASYLRNSYWLFQETKGAQWTPEENKRFENALALYDEQTSDRWLKVAAMIPGKTI 60

Query: 63  GDVMKQYQELEEDVSDIEAGLIPIRGYSNRHSFTLDRADSSHGFDDLSHFYGSGVKRGTS 122
           GDVMKQYQELEEDVSDIEAGLIPIRGYSNRHSFTLDRADSSHGFDDLSHFYGSGVKRGTS
Sbjct: 61  GDVMKQYQELEEDVSDIEAGLIPIRGYSNRHSFTLDRADSSHGFDDLSHFYGSGVKRGTS 120

Query: 123 NKPSDHERKKGIPWTEEEHRQFLMGLKKYGKGDWRNISRNFVTTRTPTQVASHAQKYFIR 182
           NKPSDHERKKGIPWTEEEHRQFLMGLKKYGKGDWRNISRNFVTTRTPTQVASHAQKYFIR
Sbjct: 121 NKPSDHERKKGIPWTEEEHRQFLMGLKKYGKGDWRNISRNFVTTRTPTQVASHAQKYFIR 180

Query: 183 QLTGGKDKRRSSIHDITTVNLPDAKSPSGDSN 215
           QLTGGKDKRRSSIHDITTVNLPDAKSPSGDSN
Sbjct: 181 QLTGGKDKRRSSIHDITTVNLPDAKSPSGDSN 212

BLAST of MS013947 vs. ExPASy TrEMBL
Match: A0A0A0KXH8 (DNA binding protein OS=Cucumis sativus OX=3659 GN=Csa_4G308500 PE=4 SV=1)

HSP 1 Score: 412.5 bits (1059), Expect = 1.1e-111
Identity = 198/212 (93.40%), Postives = 203/212 (95.75%), Query Frame = 0

Query: 3   MEFLSPASYLRNSYWLFQETKGAQWTPEENKRFENALALYDEQTSDRWLKVAAMIPGKTI 62
           MEFLSPASYLRNS WLFQETKG QWTPEENKRFENALALYDE TSDRW KVAAMIPGKTI
Sbjct: 1   MEFLSPASYLRNSNWLFQETKGTQWTPEENKRFENALALYDEDTSDRWFKVAAMIPGKTI 60

Query: 63  GDVMKQYQELEEDVSDIEAGLIPIRGYSNRHSFTLDRADSSHGFDDLSHFYGSGVKRGTS 122
           GDV+KQYQELEEDVSDIEAGLIPIRGY+NRHSFTL+R DSSHGFD LSHFYGSGVKRGTS
Sbjct: 61  GDVIKQYQELEEDVSDIEAGLIPIRGYANRHSFTLERVDSSHGFDGLSHFYGSGVKRGTS 120

Query: 123 NKPSDHERKKGIPWTEEEHRQFLMGLKKYGKGDWRNISRNFVTTRTPTQVASHAQKYFIR 182
            +PSDHERKKGIPWTEEEHRQFLMGLKKYGKGDWRNISRNFVTTRTPTQVASHAQKYFIR
Sbjct: 121 TRPSDHERKKGIPWTEEEHRQFLMGLKKYGKGDWRNISRNFVTTRTPTQVASHAQKYFIR 180

Query: 183 QLTGGKDKRRSSIHDITTVNLPDAKSPSGDSN 215
           QL+GGKDKRRSSIHDITTVNLPD KSP GDSN
Sbjct: 181 QLSGGKDKRRSSIHDITTVNLPDMKSPLGDSN 212

BLAST of MS013947 vs. ExPASy TrEMBL
Match: A0A5A7TSE0 (Transcription factor DIVARICATA-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold78209G00630 PE=4 SV=1)

HSP 1 Score: 411.0 bits (1055), Expect = 3.1e-111
Identity = 197/212 (92.92%), Postives = 202/212 (95.28%), Query Frame = 0

Query: 3   MEFLSPASYLRNSYWLFQETKGAQWTPEENKRFENALALYDEQTSDRWLKVAAMIPGKTI 62
           MEFLSPASYLRNS WLFQETKG QWTPEENKRFENALALYDE TSDRW KVAAMIPGKTI
Sbjct: 1   MEFLSPASYLRNSNWLFQETKGTQWTPEENKRFENALALYDEDTSDRWFKVAAMIPGKTI 60

Query: 63  GDVMKQYQELEEDVSDIEAGLIPIRGYSNRHSFTLDRADSSHGFDDLSHFYGSGVKRGTS 122
           GDV+KQYQELEEDVSDIEAGLIPIRGY+NRHSFTL+R DSSHGFD LSHFYGSGVKRGTS
Sbjct: 61  GDVIKQYQELEEDVSDIEAGLIPIRGYANRHSFTLERVDSSHGFDGLSHFYGSGVKRGTS 120

Query: 123 NKPSDHERKKGIPWTEEEHRQFLMGLKKYGKGDWRNISRNFVTTRTPTQVASHAQKYFIR 182
            +PSDHERKKGIPWTEEEHRQFLMGLKKYGKGDWRNISRNFVTTRTPTQVASHAQKYFIR
Sbjct: 121 TRPSDHERKKGIPWTEEEHRQFLMGLKKYGKGDWRNISRNFVTTRTPTQVASHAQKYFIR 180

Query: 183 QLTGGKDKRRSSIHDITTVNLPDAKSPSGDSN 215
           QL+GGKDKRRSSIHDITTVNLPD KSP GD N
Sbjct: 181 QLSGGKDKRRSSIHDITTVNLPDVKSPLGDCN 212

BLAST of MS013947 vs. ExPASy TrEMBL
Match: A0A1S3BKW0 (transcription factor DIVARICATA-like OS=Cucumis melo OX=3656 GN=LOC103491144 PE=4 SV=1)

HSP 1 Score: 411.0 bits (1055), Expect = 3.1e-111
Identity = 197/212 (92.92%), Postives = 202/212 (95.28%), Query Frame = 0

Query: 3   MEFLSPASYLRNSYWLFQETKGAQWTPEENKRFENALALYDEQTSDRWLKVAAMIPGKTI 62
           MEFLSPASYLRNS WLFQETKG QWTPEENKRFENALALYDE TSDRW KVAAMIPGKTI
Sbjct: 1   MEFLSPASYLRNSNWLFQETKGTQWTPEENKRFENALALYDEDTSDRWFKVAAMIPGKTI 60

Query: 63  GDVMKQYQELEEDVSDIEAGLIPIRGYSNRHSFTLDRADSSHGFDDLSHFYGSGVKRGTS 122
           GDV+KQYQELEEDVSDIEAGLIPIRGY+NRHSFTL+R DSSHGFD LSHFYGSGVKRGTS
Sbjct: 61  GDVIKQYQELEEDVSDIEAGLIPIRGYANRHSFTLERVDSSHGFDGLSHFYGSGVKRGTS 120

Query: 123 NKPSDHERKKGIPWTEEEHRQFLMGLKKYGKGDWRNISRNFVTTRTPTQVASHAQKYFIR 182
            +PSDHERKKGIPWTEEEHRQFLMGLKKYGKGDWRNISRNFVTTRTPTQVASHAQKYFIR
Sbjct: 121 TRPSDHERKKGIPWTEEEHRQFLMGLKKYGKGDWRNISRNFVTTRTPTQVASHAQKYFIR 180

Query: 183 QLTGGKDKRRSSIHDITTVNLPDAKSPSGDSN 215
           QL+GGKDKRRSSIHDITTVNLPD KSP GD N
Sbjct: 181 QLSGGKDKRRSSIHDITTVNLPDVKSPLGDCN 212

BLAST of MS013947 vs. ExPASy TrEMBL
Match: A0A6J1EUQ3 (transcription factor DIVARICATA-like OS=Cucurbita moschata OX=3662 GN=LOC111438121 PE=4 SV=1)

HSP 1 Score: 401.0 bits (1029), Expect = 3.2e-108
Identity = 194/212 (91.51%), Postives = 197/212 (92.92%), Query Frame = 0

Query: 3   MEFLSPASYLRNSYWLFQETKGAQWTPEENKRFENALALYDEQTSDRWLKVAAMIPGKTI 62
           MEFLSPASYLRNS WLFQETK  QWTPEENKRFENALALYDE TSDRWLKVAAMIPGKTI
Sbjct: 1   MEFLSPASYLRNSNWLFQETKETQWTPEENKRFENALALYDEDTSDRWLKVAAMIPGKTI 60

Query: 63  GDVMKQYQELEEDVSDIEAGLIPIRGYSNRHSFTLDRADSSHGFDDLSHFYGSGVKRGTS 122
           GDV+K YQELEEDV DIEAGLIPIRGY NRHSFTL+R DSSHGFD LSHFYG+  K GTS
Sbjct: 61  GDVVKHYQELEEDVCDIEAGLIPIRGYDNRHSFTLERVDSSHGFDGLSHFYGAEFKTGTS 120

Query: 123 NKPSDHERKKGIPWTEEEHRQFLMGLKKYGKGDWRNISRNFVTTRTPTQVASHAQKYFIR 182
             PSDHERKKGIPWTEEEHRQFLMGLKKYGKGDWRNISRNFVTTRTPTQVASHAQKYFIR
Sbjct: 121 TTPSDHERKKGIPWTEEEHRQFLMGLKKYGKGDWRNISRNFVTTRTPTQVASHAQKYFIR 180

Query: 183 QLTGGKDKRRSSIHDITTVNLPDAKSPSGDSN 215
           QLTGGKDKRRSSIHDITTVNLPD KSPSGDSN
Sbjct: 181 QLTGGKDKRRSSIHDITTVNLPDMKSPSGDSN 212

BLAST of MS013947 vs. TAIR 10
Match: AT2G38090.1 (Duplicated homeodomain-like superfamily protein )

HSP 1 Score: 307.4 bits (786), Expect = 9.2e-84
Identity = 149/218 (68.35%), Postives = 181/218 (83.03%), Query Frame = 0

Query: 3   MEFLSPASYLRNSYWLFQETKGAQWTPEENKRFENALALYDEQTSDRWLKVAAMIPGKTI 62
           +E +SPA+YL  S WLFQE +G +WT EENK+FENALA YD+ T DRW +VAAM+PGKT+
Sbjct: 5   IEVMSPATYLETSNWLFQENRGTKWTAEENKKFENALAFYDKDTPDRWSRVAAMLPGKTV 64

Query: 63  GDVMKQYQELEEDVSDIEAGLIPIRGYSNRHSFTL-----DRADSSHGFDDLSHFY-GSG 122
           GDV+KQY+ELEEDVSDIEAGLIPI GY++  SFTL     D A  ++GF+   +++  +G
Sbjct: 65  GDVIKQYRELEEDVSDIEAGLIPIPGYAS-DSFTLDWGGYDGASGNNGFNMNGYYFSAAG 124

Query: 123 VKRGTSNKPSDHERKKGIPWTEEEHRQFLMGLKKYGKGDWRNISRNFVTTRTPTQVASHA 182
            KRG++ + ++HERKKG+PWTEEEHRQFLMGLKKYGKGDWRNI+RNFVTTRTPTQVASHA
Sbjct: 125 GKRGSAARTAEHERKKGVPWTEEEHRQFLMGLKKYGKGDWRNIARNFVTTRTPTQVASHA 184

Query: 183 QKYFIRQLTGGKDKRRSSIHDITTVNLPDAKSPSGDSN 215
           QKYFIRQ+ GGKDKRRSSIHDITTVN+PD+   +   N
Sbjct: 185 QKYFIRQVNGGKDKRRSSIHDITTVNIPDSPDAAAADN 221

BLAST of MS013947 vs. TAIR 10
Match: AT5G58900.1 (Homeodomain-like transcriptional regulator )

HSP 1 Score: 261.2 bits (666), Expect = 7.5e-70
Identity = 133/215 (61.86%), Postives = 156/215 (72.56%), Query Frame = 0

Query: 3   MEFLSPA-SYLRNSYWLFQETK--------GAQWTPEENKRFENALALYDEQTSDRWLKV 62
           ME + P+ S++    WL +ETK        GA WT  ENK FENALA+YD+ T DRW KV
Sbjct: 1   MEVMRPSTSHVSGGNWLMEETKSGVAASGEGATWTAAENKAFENALAVYDDNTPDRWQKV 60

Query: 63  AAMIPGKTIGDVMKQYQELEEDVSDIEAGLIPIRGYSNRHSFTLDRADSSHGFDDLSHFY 122
           AA+IPGKT+ DV++QY +LE DVS IEAGLIP+ GY     FTLD A    G +     +
Sbjct: 61  AAVIPGKTVSDVIRQYNDLEADVSSIEAGLIPVPGYITSPPFTLDWAGGGGGCNGFKPGH 120

Query: 123 GSGVKRGTSNKPSDHERKKGIPWTEEEHRQFLMGLKKYGKGDWRNISRNFVTTRTPTQVA 182
               KR  + +  + ERKKG+PWTEEEH+ FLMGLKKYGKGDWRNISRNFV TRTPTQVA
Sbjct: 121 QVCNKRSQAGRSPELERKKGVPWTEEEHKLFLMGLKKYGKGDWRNISRNFVITRTPTQVA 180

Query: 183 SHAQKYFIRQLTGGKDKRRSSIHDITTVNLPDAKS 209
           SHAQKYFIRQL+GGKDKRR+SIHDITTVNL +  S
Sbjct: 181 SHAQKYFIRQLSGGKDKRRASIHDITTVNLEEEAS 215

BLAST of MS013947 vs. TAIR 10
Match: AT5G01200.1 (Duplicated homeodomain-like superfamily protein )

HSP 1 Score: 245.0 bits (624), Expect = 5.6e-65
Identity = 128/218 (58.72%), Postives = 158/218 (72.48%), Query Frame = 0

Query: 3   MEFLSPASYLRNSYWLFQETKGAQWTPEENKRFENALALYDEQTS-DRWLKVAAMIPGKT 62
           +   SPA    N+ W+FQE + A WT EENKRFE ALA  D++ + + W K+A +IPGKT
Sbjct: 10  VNMFSPA----NTNWIFQEVREATWTAEENKRFEKALAYLDDKDNLESWSKIADLIPGKT 69

Query: 63  IGDVMKQYQELEEDVSDIEAGLIPIRGYSNRHS------FTLDRADSSHGFDDLSHFYGS 122
           + DV+K+Y+ELE+DVSDIEAGLIPI GY    S      +     +SS+G+D     Y  
Sbjct: 70  VADVIKRYKELEDDVSDIEAGLIPIPGYGGDASSAANSDYFFGLENSSYGYD-----YVV 129

Query: 123 GVKRGT-------SNKPSDHERKKGIPWTEEEHRQFLMGLKKYGKGDWRNISRNFVTTRT 182
           G KR +        +   + ERKKG+PWTE+EH +FLMGLKKYGKGDWRNI+++FVTTRT
Sbjct: 130 GGKRSSPAMTDCFRSPMPEKERKKGVPWTEDEHLRFLMGLKKYGKGDWRNIAKSFVTTRT 189

Query: 183 PTQVASHAQKYFIRQLTGGKDKRRSSIHDITTVNLPDA 207
           PTQVASHAQKYF+RQLT GKDKRRSSIHDITTVN+PDA
Sbjct: 190 PTQVASHAQKYFLRQLTDGKDKRRSSIHDITTVNIPDA 218

BLAST of MS013947 vs. TAIR 10
Match: AT5G05790.1 (Duplicated homeodomain-like superfamily protein )

HSP 1 Score: 229.9 bits (585), Expect = 1.9e-60
Identity = 117/192 (60.94%), Postives = 139/192 (72.40%), Query Frame = 0

Query: 23  KGAQWTPEENKRFENALALYDEQTSDRWLKVAAMIPGKTIGDVMKQYQELEEDVSDIEAG 82
           + + WT EENK+FE ALA+Y + T DRW KVAAMIPGKTI DVM+QY +LEED+ DIEAG
Sbjct: 27  QSSSWTKEENKKFERALAVYADDTPDRWFKVAAMIPGKTISDVMRQYSKLEEDLFDIEAG 86

Query: 83  LIPIRGYSNRHSFTLDRADSSHGFDDLSHFYGSGVKRGTSNKPSDHERKKGIPWTEEEHR 142
           L+PI GY +      D+  S   FD          K     +  D +R+KG+PWTEEEHR
Sbjct: 87  LVPIPGYRSVTPCGFDQVVSPRDFDAYR-------KLPNGARGFDQDRRKGVPWTEEEHR 146

Query: 143 QFLMGLKKYGKGDWRNISRNFVTTRTPTQVASHAQKYFIRQLTGGKDKRRSSIHDITTVN 202
           +FL+GL KYGKGDWRNISRNFV ++TPTQVASHAQKY+ RQL+G KDKRR SIHDITTVN
Sbjct: 147 RFLLGLLKYGKGDWRNISRNFVGSKTPTQVASHAQKYYQRQLSGAKDKRRPSIHDITTVN 206

Query: 203 LPDA--KSPSGD 213
           L +A    PS D
Sbjct: 207 LLNANLSRPSSD 211

BLAST of MS013947 vs. TAIR 10
Match: AT3G11280.1 (Duplicated homeodomain-like superfamily protein )

HSP 1 Score: 228.8 bits (582), Expect = 4.1e-60
Identity = 125/213 (58.69%), Postives = 145/213 (68.08%), Query Frame = 0

Query: 3   MEFLSPASYLRNSYWLF--------QETKGAQWTPEENKRFENALALYDEQTSDRWLKVA 62
           ME L P S+L  S   F          +    WT EENK FE ALA+Y E + DRW KVA
Sbjct: 1   METLHPFSHLPISDHRFVVQEMVSLHSSSSGSWTKEENKMFERALAIYAEDSPDRWFKVA 60

Query: 63  AMIPGKTIGDVMKQYQELEEDVSDIEAGLIPIRGYSNRHSFTLDRADSSHGFD-DLSHFY 122
           +MIPGKT+ DVMKQY +LEEDV DIEAG +PI GY          A S  GFD D+    
Sbjct: 61  SMIPGKTVFDVMKQYSKLEEDVFDIEAGRVPIPGY--------PAASSPLGFDTDMCR-- 120

Query: 123 GSGVKRGTSNKPSDHERKKGIPWTEEEHRQFLMGLKKYGKGDWRNISRNFVTTRTPTQVA 182
               KR +  + SD +RKKG+PWTEEEHR+FL+GL KYGKGDWRNISRNFV ++TPTQVA
Sbjct: 121 ----KRPSGARGSDQDRKKGVPWTEEEHRRFLLGLLKYGKGDWRNISRNFVVSKTPTQVA 180

Query: 183 SHAQKYFIRQLTGGKDKRRSSIHDITTVNLPDA 207
           SHAQKY+ RQL+G KDKRR SIHDITT NL +A
Sbjct: 181 SHAQKYYQRQLSGAKDKRRPSIHDITTGNLLNA 199

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022151479.12.8e-119100.00transcription factor DIVARICATA-like [Momordica charantia][more]
XP_038883537.12.2e-11193.40transcription factor DIVARICATA-like [Benincasa hispida][more]
XP_004147889.12.2e-11193.40transcription factor DIVARICATA [Cucumis sativus] >KGN54360.1 hypothetical prote... [more]
XP_008449196.16.3e-11192.92PREDICTED: transcription factor DIVARICATA-like [Cucumis melo] >KAA0045056.1 tra... [more]
XP_023517380.17.7e-10991.98transcription factor DIVARICATA-like [Cucurbita pepo subsp. pepo][more]
Match NameE-valueIdentityDescription
Q8S9H74.3e-7865.09Transcription factor DIVARICATA OS=Antirrhinum majus OX=4151 GN=DIVARICATA PE=2 ... [more]
Q9FNN69.7e-4649.48Transcription factor SRM1 OS=Arabidopsis thaliana OX=3702 GN=SRM1 PE=1 SV=1[more]
B8A9B26.7e-3946.73Transcription factor MYBS1 OS=Oryza sativa subsp. indica OX=39946 GN=MYBS1 PE=3 ... [more]
Q8LH596.7e-3946.73Transcription factor MYBS1 OS=Oryza sativa subsp. japonica OX=39947 GN=MYBS1 PE=... [more]
Q9LVS01.1e-2570.00Transcription factor KUA1 OS=Arabidopsis thaliana OX=3702 GN=KUA1 PE=1 SV=1[more]
Match NameE-valueIdentityDescription
A0A6J1DD761.4e-119100.00transcription factor DIVARICATA-like OS=Momordica charantia OX=3673 GN=LOC111019... [more]
A0A0A0KXH81.1e-11193.40DNA binding protein OS=Cucumis sativus OX=3659 GN=Csa_4G308500 PE=4 SV=1[more]
A0A5A7TSE03.1e-11192.92Transcription factor DIVARICATA-like OS=Cucumis melo var. makuwa OX=1194695 GN=E... [more]
A0A1S3BKW03.1e-11192.92transcription factor DIVARICATA-like OS=Cucumis melo OX=3656 GN=LOC103491144 PE=... [more]
A0A6J1EUQ33.2e-10891.51transcription factor DIVARICATA-like OS=Cucurbita moschata OX=3662 GN=LOC1114381... [more]
Match NameE-valueIdentityDescription
AT2G38090.19.2e-8468.35Duplicated homeodomain-like superfamily protein [more]
AT5G58900.17.5e-7061.86Homeodomain-like transcriptional regulator [more]
AT5G01200.15.6e-6558.72Duplicated homeodomain-like superfamily protein [more]
AT5G05790.11.9e-6060.94Duplicated homeodomain-like superfamily protein [more]
AT3G11280.14.1e-6058.69Duplicated homeodomain-like superfamily protein [more]
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001005SANT/Myb domainSMARTSM00717santcoord: 132..182
e-value: 1.9E-12
score: 57.3
coord: 23..75
e-value: 1.5E-6
score: 37.8
IPR001005SANT/Myb domainPROSITEPS50090MYB_LIKEcoord: 19..73
score: 6.074693
IPR001005SANT/Myb domainPROSITEPS50090MYB_LIKEcoord: 128..180
score: 7.712041
IPR001005SANT/Myb domainCDDcd00167SANTcoord: 135..180
e-value: 3.10194E-11
score: 54.5038
IPR001005SANT/Myb domainCDDcd00167SANTcoord: 27..72
e-value: 1.2859E-6
score: 42.1774
IPR006447Myb domain, plantsTIGRFAMTIGR01557TIGR01557coord: 131..183
e-value: 1.1E-17
score: 62.1
NoneNo IPR availableGENE3D1.10.10.60coord: 20..86
e-value: 2.5E-20
score: 74.0
NoneNo IPR availableGENE3D1.10.10.60coord: 134..184
e-value: 8.5E-18
score: 66.3
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 185..214
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 197..214
NoneNo IPR availablePANTHERPTHR44042:SF50TRANSCRIPTION FACTOR DIVARICATAcoord: 4..212
IPR017930Myb domainPFAMPF00249Myb_DNA-bindingcoord: 26..71
e-value: 1.1E-6
score: 28.7
coord: 135..179
e-value: 2.4E-12
score: 46.8
IPR017930Myb domainPROSITEPS51294HTH_MYBcoord: 128..184
score: 20.281796
IPR043363Transcription factor DIVARICATA-likePANTHERPTHR44042DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATEDcoord: 4..212
IPR017884SANT domainPROSITEPS51293SANTcoord: 136..184
score: 10.574386
IPR009057Homeobox-like domain superfamilySUPERFAMILY46689Homeodomain-likecoord: 26..79
IPR009057Homeobox-like domain superfamilySUPERFAMILY46689Homeodomain-likecoord: 130..183

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS013947.1MS013947.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003677 DNA binding