MS013942 (gene) Bitter gourd (TR) v1

Overview


Name	MS013942
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Chlorophyll a-b binding protein, chloroplastic
Location	scaffold607: 1100140 .. 1101726 (-)
RNA-Seq Expression	MS013942
Synteny	MS013942

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ACCGCCACCGCCGCCGCAACCTCCTCCTTCATCGGAACGCGCCTCCCCGACGTGCGGCCGAGCTCCGGCCGAGTCCAAGCCCGATTCTCGTTCGGGAAAAAGAAAACCGCGCCAAAGAAATCGTCGAAGCAGATTTCCGATCGGCCGCTGTGGTTCCCCGGCGCCAAGGCGCCGGAGTGGCTGGACGGAAGCTTAGTCGGCGACTACGGCTTCGATCCGTTCGGATTGGGGAAACCGGCGGAGTATCTGCAGTACGATTTGGACTCGTTGGACCAGAACTTGGCGAAGAATGTGGCCGGAGATATAATCGGAACGCGATTCGAGAACTCTGATGTGAAATCGACGCCGTTTCAGCCGTACACGGAGGTTTTCGGATTGCAGAGGTTCCGTGAGTGCGAACTGATCCATGGAAGGTGGGCCATGCTGGCCACGCTCGGCGCTCTCTCTGTTGAGTGGCTCACTGGCGTCACCTGGCAAGACGCCGGAAAGGTCAGTTCTTTTTATTATTTTTTTATCCATTATTCGTTTAAATATGTTAAACTTTTTTTTAGCTCGTTTAAATATATCAATTTTCGTTAAATACTATCTTAGCATTGTCGTATTTATTTAAGGTTAGATTTCAATATCGTCCTTAACCTTTAATATTTGTTAAATGTTAACTCCCTATATTCTTAATTTTATCTAATATAATTTTGTAATTTTGTTAGCCATCCTACCACATATATCAATAGATTTAACAAATGGAGAATGAAATCTGATGAATATTGATAAAGGGATAATTTTTTATAATTTACGTTTCCATCTATATTAGCTCTTGGTTATCTTTTGTTTAAAAAAAAAAAAGTTTAGTAAATATAAGTATTTAAAGAAATATACATGATAACATATTTAATATATGTATTTTCTGCTGCAACATTTTCATAAAATAAAGTAGACAATTTAATGAGCATAATTCAGCGGTGATTGGTAATACCATCTTATTTTTCCTTTACCTGATAAAAAAATCATAGTCAATTTTTATTACACGGAATAATTTGATTTGATAATTTATGAATATATTTGGTCCGATAGACAACAGTTTTCACAATTTTTAGATTACGGTGACTAAATTATTAGAATTGAAAATTAAATTGTTACAAATTTAAAAATACAATCATTACTAATTAAATTAATAACTAATTTTTAGTCGTGAAATTGATCGGATCACTCAAAGATATTAAAAATGGACAGGTGGAATTGGTGGAAGGTTCGTCGTACTTGGGGCAGCCACTTCCATTCTCGATCACGACGCTGATCTGGATCGAAGTTCTAGTGATCGGGTACATCGAGTTCCAGAGGAACGCGGAGCTTGACCCGGAGAAGAGGCTGTACCCGGGAGGCAAGTTTTTCGACCCGCTGGGGCTGGCGGAGGACCCGGAGAAGAAGGCCGTCCTCCAACTGGCGGAGATCAAGCACGCCCGCCTCGCCATGGTCGCATTCCTCGGCTTCGCCGTCCAAGCCGCCGTTACCGGCAAAGGCCCGCTCAACAACTGGGCGACCCATCTCAGCGACCCGCTCCACACCACCATTATCGATTCCTTTTCTTCT

mRNA sequence

ACCGCCACCGCCGCCGCAACCTCCTCCTTCATCGGAACGCGCCTCCCCGACGTGCGGCCGAGCTCCGGCCGAGTCCAAGCCCGATTCTCGTTCGGGAAAAAGAAAACCGCGCCAAAGAAATCGTCGAAGCAGATTTCCGATCGGCCGCTGTGGTTCCCCGGCGCCAAGGCGCCGGAGTGGCTGGACGGAAGCTTAGTCGGCGACTACGGCTTCGATCCGTTCGGATTGGGGAAACCGGCGGAGTATCTGCAGTACGATTTGGACTCGTTGGACCAGAACTTGGCGAAGAATGTGGCCGGAGATATAATCGGAACGCGATTCGAGAACTCTGATGTGAAATCGACGCCGTTTCAGCCGTACACGGAGGTTTTCGGATTGCAGAGGTTCCGTGAGTGCGAACTGATCCATGGAAGGTGGGCCATGCTGGCCACGCTCGGCGCTCTCTCTGTTGAGTGGCTCACTGGCGTCACCTGGCAAGACGCCGGAAAGGTGGAATTGGTGGAAGGTTCGTCGTACTTGGGGCAGCCACTTCCATTCTCGATCACGACGCTGATCTGGATCGAAGTTCTAGTGATCGGGTACATCGAGTTCCAGAGGAACGCGGAGCTTGACCCGGAGAAGAGGCTGTACCCGGGAGGCAAGTTTTTCGACCCGCTGGGGCTGGCGGAGGACCCGGAGAAGAAGGCCGTCCTCCAACTGGCGGAGATCAAGCACGCCCGCCTCGCCATGGTCGCATTCCTCGGCTTCGCCGTCCAAGCCGCCGTTACCGGCAAAGGCCCGCTCAACAACTGGGCGACCCATCTCAGCGACCCGCTCCACACCACCATTATCGATTCCTTTTCTTCT

Coding sequence (CDS)

ACCGCCACCGCCGCCGCAACCTCCTCCTTCATCGGAACGCGCCTCCCCGACGTGCGGCCGAGCTCCGGCCGAGTCCAAGCCCGATTCTCGTTCGGGAAAAAGAAAACCGCGCCAAAGAAATCGTCGAAGCAGATTTCCGATCGGCCGCTGTGGTTCCCCGGCGCCAAGGCGCCGGAGTGGCTGGACGGAAGCTTAGTCGGCGACTACGGCTTCGATCCGTTCGGATTGGGGAAACCGGCGGAGTATCTGCAGTACGATTTGGACTCGTTGGACCAGAACTTGGCGAAGAATGTGGCCGGAGATATAATCGGAACGCGATTCGAGAACTCTGATGTGAAATCGACGCCGTTTCAGCCGTACACGGAGGTTTTCGGATTGCAGAGGTTCCGTGAGTGCGAACTGATCCATGGAAGGTGGGCCATGCTGGCCACGCTCGGCGCTCTCTCTGTTGAGTGGCTCACTGGCGTCACCTGGCAAGACGCCGGAAAGGTGGAATTGGTGGAAGGTTCGTCGTACTTGGGGCAGCCACTTCCATTCTCGATCACGACGCTGATCTGGATCGAAGTTCTAGTGATCGGGTACATCGAGTTCCAGAGGAACGCGGAGCTTGACCCGGAGAAGAGGCTGTACCCGGGAGGCAAGTTTTTCGACCCGCTGGGGCTGGCGGAGGACCCGGAGAAGAAGGCCGTCCTCCAACTGGCGGAGATCAAGCACGCCCGCCTCGCCATGGTCGCATTCCTCGGCTTCGCCGTCCAAGCCGCCGTTACCGGCAAAGGCCCGCTCAACAACTGGGCGACCCATCTCAGCGACCCGCTCCACACCACCATTATCGATTCCTTTTCTTCT

Protein sequence

TATAAATSSFIGTRLPDVRPSSGRVQARFSFGKKKTAPKKSSKQISDRPLWFPGAKAPEWLDGSLVGDYGFDPFGLGKPAEYLQYDLDSLDQNLAKNVAGDIIGTRFENSDVKSTPFQPYTEVFGLQRFRECELIHGRWAMLATLGALSVEWLTGVTWQDAGKVELVEGSSYLGQPLPFSITTLIWIEVLVIGYIEFQRNAELDPEKRLYPGGKFFDPLGLAEDPEKKAVLQLAEIKHARLAMVAFLGFAVQAAVTGKGPLNNWATHLSDPLHTTIIDSFSS

Homology

[Close]

BLAST of MS013942 vs. NCBI nr
Match: XP_022151483.1 (chlorophyll a-b binding protein CP29.1, chloroplastic [Momordica charantia])

HSP 1 Score: 574.3 bits (1479), Expect = 5.7e-160
Identity = 282/282 (100.00%), Postives = 282/282 (100.00%), Query Frame = 0


Query: 1   TATAAATSSFIGTRLPDVRPSSGRVQARFSFGKKKTAPKKSSKQISDRPLWFPGAKAPEW 60
           TATAAATSSFIGTRLPDVRPSSGRVQARFSFGKKKTAPKKSSKQISDRPLWFPGAKAPEW
Sbjct: 5   TATAAATSSFIGTRLPDVRPSSGRVQARFSFGKKKTAPKKSSKQISDRPLWFPGAKAPEW 64

Query: 61  LDGSLVGDYGFDPFGLGKPAEYLQYDLDSLDQNLAKNVAGDIIGTRFENSDVKSTPFQPY 120
           LDGSLVGDYGFDPFGLGKPAEYLQYDLDSLDQNLAKNVAGDIIGTRFENSDVKSTPFQPY
Sbjct: 65  LDGSLVGDYGFDPFGLGKPAEYLQYDLDSLDQNLAKNVAGDIIGTRFENSDVKSTPFQPY 124

Query: 121 TEVFGLQRFRECELIHGRWAMLATLGALSVEWLTGVTWQDAGKVELVEGSSYLGQPLPFS 180
           TEVFGLQRFRECELIHGRWAMLATLGALSVEWLTGVTWQDAGKVELVEGSSYLGQPLPFS
Sbjct: 125 TEVFGLQRFRECELIHGRWAMLATLGALSVEWLTGVTWQDAGKVELVEGSSYLGQPLPFS 184

Query: 181 ITTLIWIEVLVIGYIEFQRNAELDPEKRLYPGGKFFDPLGLAEDPEKKAVLQLAEIKHAR 240
           ITTLIWIEVLVIGYIEFQRNAELDPEKRLYPGGKFFDPLGLAEDPEKKAVLQLAEIKHAR
Sbjct: 185 ITTLIWIEVLVIGYIEFQRNAELDPEKRLYPGGKFFDPLGLAEDPEKKAVLQLAEIKHAR 244

Query: 241 LAMVAFLGFAVQAAVTGKGPLNNWATHLSDPLHTTIIDSFSS 283
           LAMVAFLGFAVQAAVTGKGPLNNWATHLSDPLHTTIIDSFSS
Sbjct: 245 LAMVAFLGFAVQAAVTGKGPLNNWATHLSDPLHTTIIDSFSS 286

[Close]

BLAST of MS013942 vs. NCBI nr
Match: XP_004147887.1 (chlorophyll a-b binding protein CP29.1, chloroplastic [Cucumis sativus] >KGN54365.1 hypothetical protein Csa_017948 [Cucumis sativus])

HSP 1 Score: 545.4 bits (1404), Expect = 2.8e-151
Identity = 268/283 (94.70%), Postives = 276/283 (97.53%), Query Frame = 0


Query: 2   ATAAATSSFIGTRLPDVRPSSGRVQARFSFGKKKTAPKK--SSKQISDRPLWFPGAKAPE 61
           ATAAATSSF+GTRL ++ PSSGRVQARF FGKKK+ PKK  SSK ISDRPLWFPGAKAPE
Sbjct: 2   ATAAATSSFLGTRLAEIVPSSGRVQARFGFGKKKSPPKKSPSSKVISDRPLWFPGAKAPE 61

Query: 62  WLDGSLVGDYGFDPFGLGKPAEYLQYDLDSLDQNLAKNVAGDIIGTRFENSDVKSTPFQP 121
           WLDGSLVGDYGFDPFGLGKPAEYLQYDLDSLDQNLAKNVAGDIIGTRFE+++VKSTPFQP
Sbjct: 62  WLDGSLVGDYGFDPFGLGKPAEYLQYDLDSLDQNLAKNVAGDIIGTRFESAEVKSTPFQP 121

Query: 122 YTEVFGLQRFRECELIHGRWAMLATLGALSVEWLTGVTWQDAGKVELVEGSSYLGQPLPF 181
           YTEVFGLQRFRECELIHGRWAMLATLGALSVEWLTGVTWQDAGKVELVEGSSYLGQPLPF
Sbjct: 122 YTEVFGLQRFRECELIHGRWAMLATLGALSVEWLTGVTWQDAGKVELVEGSSYLGQPLPF 181

Query: 182 SITTLIWIEVLVIGYIEFQRNAELDPEKRLYPGGKFFDPLGLAEDPEKKAVLQLAEIKHA 241
           SITTLIWIEVLVIGYIEFQRNAELDPEKRLYPGGKFFDPLGLAEDPEKKAVLQLAEIKHA
Sbjct: 182 SITTLIWIEVLVIGYIEFQRNAELDPEKRLYPGGKFFDPLGLAEDPEKKAVLQLAEIKHA 241

Query: 242 RLAMVAFLGFAVQAAVTGKGPLNNWATHLSDPLHTTIIDSFSS 283
           RLAMVAFLGFAVQAAVTGKGPLNNWATHLSDPLHTTIID+FSS
Sbjct: 242 RLAMVAFLGFAVQAAVTGKGPLNNWATHLSDPLHTTIIDNFSS 284

[Close]

BLAST of MS013942 vs. NCBI nr
Match: XP_008449241.1 (PREDICTED: chlorophyll a-b binding protein CP29.1, chloroplastic-like [Cucumis melo] >KAA0045037.1 chlorophyll a-b binding protein CP29.1 [Cucumis melo var. makuwa] >TYJ96289.1 chlorophyll a-b binding protein CP29.1 [Cucumis melo var. makuwa])

HSP 1 Score: 545.4 bits (1404), Expect = 2.8e-151
Identity = 268/283 (94.70%), Postives = 276/283 (97.53%), Query Frame = 0


Query: 2   ATAAATSSFIGTRLPDVRPSSGRVQARFSFGKKKTAPKK--SSKQISDRPLWFPGAKAPE 61
           ATAAATSSFIGTRL ++ PSSGRVQARF FGKKK+ PKK  SSK ISDRPLWFPGAKAPE
Sbjct: 2   ATAAATSSFIGTRLAEIVPSSGRVQARFGFGKKKSPPKKSPSSKGISDRPLWFPGAKAPE 61

Query: 62  WLDGSLVGDYGFDPFGLGKPAEYLQYDLDSLDQNLAKNVAGDIIGTRFENSDVKSTPFQP 121
           WLDGSLVGDYGFDPFGLGKPAEYLQYDLDSLDQNLAKNVAGDIIGTRFE+++VKSTPFQP
Sbjct: 62  WLDGSLVGDYGFDPFGLGKPAEYLQYDLDSLDQNLAKNVAGDIIGTRFESAEVKSTPFQP 121

Query: 122 YTEVFGLQRFRECELIHGRWAMLATLGALSVEWLTGVTWQDAGKVELVEGSSYLGQPLPF 181
           YTEVFGLQRFRECELIHGRWAMLATLGALSVEWLTGVTWQDAGKVELVEGSSYLGQPLPF
Sbjct: 122 YTEVFGLQRFRECELIHGRWAMLATLGALSVEWLTGVTWQDAGKVELVEGSSYLGQPLPF 181

Query: 182 SITTLIWIEVLVIGYIEFQRNAELDPEKRLYPGGKFFDPLGLAEDPEKKAVLQLAEIKHA 241
           S+TTLIWIEVLVIGYIEFQRNAELDPEKRLYPGGKFFDPLGLAEDPEKKAVLQLAEIKHA
Sbjct: 182 SLTTLIWIEVLVIGYIEFQRNAELDPEKRLYPGGKFFDPLGLAEDPEKKAVLQLAEIKHA 241

Query: 242 RLAMVAFLGFAVQAAVTGKGPLNNWATHLSDPLHTTIIDSFSS 283
           RLAMVAFLGFAVQAAVTGKGPLNNWATHLSDPLHTTIID+FSS
Sbjct: 242 RLAMVAFLGFAVQAAVTGKGPLNNWATHLSDPLHTTIIDNFSS 284

[Close]

BLAST of MS013942 vs. NCBI nr
Match: XP_038882769.1 (chlorophyll a-b binding protein CP29.1, chloroplastic-like [Benincasa hispida])

HSP 1 Score: 545.4 bits (1404), Expect = 2.8e-151
Identity = 268/283 (94.70%), Postives = 275/283 (97.17%), Query Frame = 0


Query: 2   ATAAATSSFIGTRLPDVRPSSGRVQARFSFGKKKTAPKK--SSKQISDRPLWFPGAKAPE 61
           ATAAATSSFIGTRL ++RP SGRVQARF FGKKK+ PKK  SSK ISDRPLWFPGAKAPE
Sbjct: 2   ATAAATSSFIGTRLAELRPCSGRVQARFGFGKKKSPPKKSPSSKTISDRPLWFPGAKAPE 61

Query: 62  WLDGSLVGDYGFDPFGLGKPAEYLQYDLDSLDQNLAKNVAGDIIGTRFENSDVKSTPFQP 121
           WLDGSLVGDYGFDPFGLGKPAEYLQYDLDSLDQNLAKNVAGDIIGTRFE+++VKSTPFQP
Sbjct: 62  WLDGSLVGDYGFDPFGLGKPAEYLQYDLDSLDQNLAKNVAGDIIGTRFESAEVKSTPFQP 121

Query: 122 YTEVFGLQRFRECELIHGRWAMLATLGALSVEWLTGVTWQDAGKVELVEGSSYLGQPLPF 181
           YTEVFGLQRFRECELIHGRWAMLATLGALSVEWLTGVTWQDAGKVELVEGSSYLGQPLPF
Sbjct: 122 YTEVFGLQRFRECELIHGRWAMLATLGALSVEWLTGVTWQDAGKVELVEGSSYLGQPLPF 181

Query: 182 SITTLIWIEVLVIGYIEFQRNAELDPEKRLYPGGKFFDPLGLAEDPEKKAVLQLAEIKHA 241
           SITTLIWIEVLVIGYIEFQRNAELDPEKRLYPGGKFFDPLGLAEDPEKK VLQLAEIKHA
Sbjct: 182 SITTLIWIEVLVIGYIEFQRNAELDPEKRLYPGGKFFDPLGLAEDPEKKVVLQLAEIKHA 241

Query: 242 RLAMVAFLGFAVQAAVTGKGPLNNWATHLSDPLHTTIIDSFSS 283
           RLAMVAFLGFAVQAAVTGKGPLNNWATHLSDPLHTTIID+FSS
Sbjct: 242 RLAMVAFLGFAVQAAVTGKGPLNNWATHLSDPLHTTIIDNFSS 284

[Close]

BLAST of MS013942 vs. NCBI nr
Match: XP_022978220.1 (chlorophyll a-b binding protein CP29.1, chloroplastic-like [Cucurbita maxima])

HSP 1 Score: 543.9 bits (1400), Expect = 8.2e-151
Identity = 269/284 (94.72%), Postives = 275/284 (96.83%), Query Frame = 0


Query: 1   TATAAATSSFIGTRLPDVRPSSGRVQARFSFGKKKTAPKK--SSKQISDRPLWFPGAKAP 60
           TATAAATSSFIGTRL DVRPSSGRVQARF FGKKK   KK  SSK ISDRPLWFPGAKAP
Sbjct: 3   TATAAATSSFIGTRLVDVRPSSGRVQARFGFGKKKAPAKKSPSSKTISDRPLWFPGAKAP 62

Query: 61  EWLDGSLVGDYGFDPFGLGKPAEYLQYDLDSLDQNLAKNVAGDIIGTRFENSDVKSTPFQ 120
           EWLDGSLVGDYGFDPFGLGKPAEYLQYDLDSLDQNLAKNVAGDIIGTRFEN+DVKSTPFQ
Sbjct: 63  EWLDGSLVGDYGFDPFGLGKPAEYLQYDLDSLDQNLAKNVAGDIIGTRFENADVKSTPFQ 122

Query: 121 PYTEVFGLQRFRECELIHGRWAMLATLGALSVEWLTGVTWQDAGKVELVEGSSYLGQPLP 180
           PY+EVFGLQRFRECELIHGRWAMLATLGAL+VE LTG+TWQDAGKVELVEGSSYLGQPLP
Sbjct: 123 PYSEVFGLQRFRECELIHGRWAMLATLGALAVEGLTGITWQDAGKVELVEGSSYLGQPLP 182

Query: 181 FSITTLIWIEVLVIGYIEFQRNAELDPEKRLYPGGKFFDPLGLAEDPEKKAVLQLAEIKH 240
           FS+TTLIWIEVLVIGYIEFQRNAELDPEKRLYPGGKFFDPLGLAEDPEKKAVLQLAEIKH
Sbjct: 183 FSLTTLIWIEVLVIGYIEFQRNAELDPEKRLYPGGKFFDPLGLAEDPEKKAVLQLAEIKH 242

Query: 241 ARLAMVAFLGFAVQAAVTGKGPLNNWATHLSDPLHTTIIDSFSS 283
           ARLAMVAFLGFAVQAAVTGKGPLNNWATHLSDPLHTTIID+FSS
Sbjct: 243 ARLAMVAFLGFAVQAAVTGKGPLNNWATHLSDPLHTTIIDNFSS 286

[Close]

BLAST of MS013942 vs. ExPASy Swiss-Prot
Match: Q07473 (Chlorophyll a-b binding protein CP29.1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=LHCB4.1 PE=1 SV=1)

HSP 1 Score: 494.6 bits (1272), Expect = 7.5e-139
Identity = 241/285 (84.56%), Postives = 261/285 (91.58%), Query Frame = 0


Query: 1   TATAAATSSFIGTRL-PDVRPSSGRVQARFSFGKKKTAPKKSSKQ--ISDRPLWFPGAKA 60
           +A AAA SS +GTR+ P + P SGR  A F FGKKK APKKS+K+   +DRPLW+PGA +
Sbjct: 5   SAAAAAASSIMGTRVAPGIHPGSGRFTAVFGFGKKKAAPKKSAKKTVTTDRPLWYPGAIS 64

Query: 61  PEWLDGSLVGDYGFDPFGLGKPAEYLQYDLDSLDQNLAKNVAGDIIGTRFENSDVKSTPF 120
           P+WLDGSLVGDYGFDPFGLGKPAEYLQ+D+DSLDQNLAKN+AGD+IGTR E +D KSTPF
Sbjct: 65  PDWLDGSLVGDYGFDPFGLGKPAEYLQFDIDSLDQNLAKNLAGDVIGTRTEAADAKSTPF 124

Query: 121 QPYTEVFGLQRFRECELIHGRWAMLATLGALSVEWLTGVTWQDAGKVELVEGSSYLGQPL 180
           QPY+EVFG+QRFRECELIHGRWAMLATLGALSVEWLTGVTWQDAGKVELV+GSSYLGQPL
Sbjct: 125 QPYSEVFGIQRFRECELIHGRWAMLATLGALSVEWLTGVTWQDAGKVELVDGSSYLGQPL 184

Query: 181 PFSITTLIWIEVLVIGYIEFQRNAELDPEKRLYPGGKFFDPLGLAEDPEKKAVLQLAEIK 240
           PFSI+TLIWIEVLVIGYIEFQRNAELD EKRLYPGGKFFDPLGLA DPEK A LQLAEIK
Sbjct: 185 PFSISTLIWIEVLVIGYIEFQRNAELDSEKRLYPGGKFFDPLGLAADPEKTAQLQLAEIK 244

Query: 241 HARLAMVAFLGFAVQAAVTGKGPLNNWATHLSDPLHTTIIDSFSS 283
           HARLAMVAFLGFAVQAA TGKGPLNNWATHLSDPLHTTIID+FSS
Sbjct: 245 HARLAMVAFLGFAVQAAATGKGPLNNWATHLSDPLHTTIIDTFSS 289

[Close]

BLAST of MS013942 vs. ExPASy Swiss-Prot
Match: Q9XF88 (Chlorophyll a-b binding protein CP29.2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=LHCB4.2 PE=1 SV=1)

HSP 1 Score: 488.0 bits (1255), Expect = 7.0e-137
Identity = 238/283 (84.10%), Postives = 257/283 (90.81%), Query Frame = 0


Query: 1   TATAAATSSFIGTR-LPDVRPSSGRVQARFSFGKKKTAPKKSSKQISDRPLWFPGAKAPE 60
           T+TAAA SS +GTR + D+  +S R  ARF FG KK +PKK+   ISDRPLWFPGAK+PE
Sbjct: 4   TSTAAAASSIMGTRVVSDISSNSSRFTARFGFGTKKASPKKAKTVISDRPLWFPGAKSPE 63

Query: 61  WLDGSLVGDYGFDPFGLGKPAEYLQYDLDSLDQNLAKNVAGDIIGTRFENSDVKSTPFQP 120
           +LDGSLVGDYGFDPFGLGKPAEYLQ+DLDSLDQNLAKN+ G++IGTR E  D KSTPFQP
Sbjct: 64  YLDGSLVGDYGFDPFGLGKPAEYLQFDLDSLDQNLAKNLYGEVIGTRTEAVDPKSTPFQP 123

Query: 121 YTEVFGLQRFRECELIHGRWAMLATLGALSVEWLTGVTWQDAGKVELVEGSSYLGQPLPF 180
           Y+EVFGLQRFRECELIHGRWAMLATLGA++VEWLTGVTWQDAGKVELV+GSSYLGQPLPF
Sbjct: 124 YSEVFGLQRFRECELIHGRWAMLATLGAITVEWLTGVTWQDAGKVELVDGSSYLGQPLPF 183

Query: 181 SITTLIWIEVLVIGYIEFQRNAELDPEKRLYPGGKFFDPLGLAEDPEKKAVLQLAEIKHA 240
           SI+TLIWIEVLVIGYIEFQRNAELD EKRLYPGGKFFDPLGLA DP KKA LQLAEIKHA
Sbjct: 184 SISTLIWIEVLVIGYIEFQRNAELDSEKRLYPGGKFFDPLGLASDPVKKAQLQLAEIKHA 243

Query: 241 RLAMVAFLGFAVQAAVTGKGPLNNWATHLSDPLHTTIIDSFSS 283
           RLAMV FLGFAVQAA TGKGPLNNWATHLSDPLHTTIID+FSS
Sbjct: 244 RLAMVGFLGFAVQAAATGKGPLNNWATHLSDPLHTTIIDTFSS 286

[Close]

BLAST of MS013942 vs. ExPASy Swiss-Prot
Match: Q9S7W1 (Chlorophyll a-b binding protein CP29.3, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=LHCB4.3 PE=2 SV=1)

HSP 1 Score: 414.1 bits (1063), Expect = 1.3e-114
Identity = 207/272 (76.10%), Postives = 231/272 (84.93%), Query Frame = 0


Query: 1   TATAAATSSFIGTRLPDVRPSSGRVQAR--FSFGKKKTA-PKKSSKQI---SDRPLWFPG 60
           T TAAA S   G R+ D RP +GRVQAR  FSFGKKK A P K S+Q+    DR +WFPG
Sbjct: 3   TTTAAAASGIFGIRIQDPRPGTGRVQARFGFSFGKKKPAPPPKKSRQVQDDGDRLVWFPG 62

Query: 61  AKAPEWLDGSLVGDYGFDPFGLGKPAEYLQYDLDSLDQNLAKNVAGDIIGTRFENSDVKS 120
           A  PEWLDGS++GD GFDPFGLGKPAEYLQYD D LDQNLAKNVAGDIIG   E+S++K 
Sbjct: 63  ANPPEWLDGSMIGDRGFDPFGLGKPAEYLQYDFDGLDQNLAKNVAGDIIGIIQESSEIKP 122

Query: 121 TPFQPYTEVFGLQRFRECELIHGRWAMLATLGALSVEWLTGVTWQDAGKVELVEGSSYLG 180
           TPFQPYTEVFG+QRFRECELIHGRWAML TLGA++VE LTG+ WQDAGKVELVEGSSYLG
Sbjct: 123 TPFQPYTEVFGIQRFRECELIHGRWAMLGTLGAIAVEALTGIAWQDAGKVELVEGSSYLG 182

Query: 181 QPLPFSITTLIWIEVLVIGYIEFQRNAELDPEKRLYPGGKFFDPLGLAEDPEKKAVLQLA 240
           QPLPFS+TTLIWIEVLV+GYIEFQRN+ELDPEKR+YPGG +FDPLGLA DPEK   L+LA
Sbjct: 183 QPLPFSLTTLIWIEVLVVGYIEFQRNSELDPEKRIYPGG-YFDPLGLAADPEKLDTLKLA 242

Query: 241 EIKHARLAMVAFLGFAVQAAVTGKGPLNNWAT 267
           EIKH+RLAMVAFL FA+QAA TGKGP++  AT
Sbjct: 243 EIKHSRLAMVAFLIFALQAAFTGKGPVSFLAT 273

[Close]

BLAST of MS013942 vs. ExPASy Swiss-Prot
Match: Q93WD2 (Chlorophyll a-b binding protein CP29 OS=Chlamydomonas reinhardtii OX=3055 GN=Lhcb4 PE=1 SV=3)

HSP 1 Score: 248.4 bits (633), Expect = 9.4e-65
Identity = 137/265 (51.70%), Postives = 168/265 (63.40%), Query Frame = 0


Query: 20  PSSGRVQARFSFGKKKTAPKKSSKQISDR----------------PLWFPGAKAPEWLDG 79
           P+    Q +      K APK ++K+++                   LW P    PEWLDG
Sbjct: 6   PTPPGTQKKAGTTATKPAPKATTKKVATSTGTRSGGVGYRKYQGDALWLPNTTRPEWLDG 65

Query: 80  SLVGDYGFDPFGLGKPAEYLQYDLDSLDQNLAKNVAGDIIGTRFENSDVKSTP--FQPYT 139
           SL GD GFDP GL KP+E++   +D  DQN AKN  G +        D  S+     PY+
Sbjct: 66  SLPGDRGFDPLGLSKPSEFVVIGVDENDQNAAKNNKGSVEAIVQATPDEVSSENRLAPYS 125

Query: 140 EVFGLQRFRECELIHGRWAMLATLGALSVEWLTGVTWQDAGKVELVEGSSYLGQPLPFSI 199
           EVFGL RFRECELIHGRWAMLA LGAL  E  TGV+W +AGKVEL +G+SY G  LPFSI
Sbjct: 126 EVFGLARFRECELIHGRWAMLACLGALVAEATTGVSWVEAGKVEL-DGASYAGLSLPFSI 185

Query: 200 TTLIWIEVLVIGYIEFQRNAELDPEKRLYPGGKFFDPLGLAEDPEKKAV-LQLAEIKHAR 259
           T LIWIEV+++G  EF RN+E +PEKR YPGG  FDPL LA + E++A  L+ AEIKHAR
Sbjct: 186 TQLIWIEVILVGGAEFYRNSETNPEKRCYPGG-VFDPLKLASEDEERAFRLKTAEIKHAR 245

Query: 260 LAMVAFLGFAVQAAVTGKGPLNNWA 266
           LAMV+F G+ VQA  TG+G L + A
Sbjct: 246 LAMVSFFGYGVQALSTGEGALGSLA 268

[Close]

BLAST of MS013942 vs. ExPASy Swiss-Prot
Match: Q01667 (Chlorophyll a-b binding protein 6, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=LHCA1 PE=1 SV=1)

HSP 1 Score: 161.8 bits (408), Expect = 1.2e-38
Identity = 97/233 (41.63%), Postives = 128/233 (54.94%), Query Frame = 0


Query: 51  WFPGAKAPEWLDGSLVGDYGFDPFGLGK-PAEYLQYDLDSLDQNLAKNVAGDIIGTRFEN 110
           W PG   P +LDGS  GD+GFDP GLG+ PA                             
Sbjct: 48  WMPGEPRPAYLDGSAPGDFGFDPLGLGEVPA----------------------------- 107

Query: 111 SDVKSTPFQPYTEVFGLQRFRECELIHGRWAMLATLGALSVEWLTGVTWQDAGKVELVEG 170
                           L+R++E ELIH RWAMLA  G L  E L    W  A +   + G
Sbjct: 108 ---------------NLERYKESELIHCRWAMLAVPGILVPEALGYGNWVKAQEWAALPG 167

Query: 171 --SSYLGQPLPF-SITTLIWIEVLVIGYIEFQRNAELDPEKRLYPGGKFFDPLGLAEDPE 230
             ++YLG P+P+ ++ T++ IE L I ++E QR+ E DPEK+ YPGG  FDPLG ++DP+
Sbjct: 168 GQATYLGNPVPWGTLPTILAIEFLAIAFVEHQRSMEKDPEKKKYPGGA-FDPLGYSKDPK 227

Query: 231 KKAVLQLAEIKHARLAMVAFLGFAV-QAAVTGKGPLNNWATHLSDPLHTTIID 279
           K   L++ EIK+ RLA++AF+GF V Q+A  G GPL N ATHL+DP H  I D
Sbjct: 228 KLEELKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGD 235

[Close]

BLAST of MS013942 vs. ExPASy TrEMBL
Match: A0A6J1DCA5 (Chlorophyll a-b binding protein, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111019415 PE=3 SV=1)

HSP 1 Score: 574.3 bits (1479), Expect = 2.8e-160
Identity = 282/282 (100.00%), Postives = 282/282 (100.00%), Query Frame = 0


Query: 1   TATAAATSSFIGTRLPDVRPSSGRVQARFSFGKKKTAPKKSSKQISDRPLWFPGAKAPEW 60
           TATAAATSSFIGTRLPDVRPSSGRVQARFSFGKKKTAPKKSSKQISDRPLWFPGAKAPEW
Sbjct: 5   TATAAATSSFIGTRLPDVRPSSGRVQARFSFGKKKTAPKKSSKQISDRPLWFPGAKAPEW 64

Query: 61  LDGSLVGDYGFDPFGLGKPAEYLQYDLDSLDQNLAKNVAGDIIGTRFENSDVKSTPFQPY 120
           LDGSLVGDYGFDPFGLGKPAEYLQYDLDSLDQNLAKNVAGDIIGTRFENSDVKSTPFQPY
Sbjct: 65  LDGSLVGDYGFDPFGLGKPAEYLQYDLDSLDQNLAKNVAGDIIGTRFENSDVKSTPFQPY 124

Query: 121 TEVFGLQRFRECELIHGRWAMLATLGALSVEWLTGVTWQDAGKVELVEGSSYLGQPLPFS 180
           TEVFGLQRFRECELIHGRWAMLATLGALSVEWLTGVTWQDAGKVELVEGSSYLGQPLPFS
Sbjct: 125 TEVFGLQRFRECELIHGRWAMLATLGALSVEWLTGVTWQDAGKVELVEGSSYLGQPLPFS 184

Query: 181 ITTLIWIEVLVIGYIEFQRNAELDPEKRLYPGGKFFDPLGLAEDPEKKAVLQLAEIKHAR 240
           ITTLIWIEVLVIGYIEFQRNAELDPEKRLYPGGKFFDPLGLAEDPEKKAVLQLAEIKHAR
Sbjct: 185 ITTLIWIEVLVIGYIEFQRNAELDPEKRLYPGGKFFDPLGLAEDPEKKAVLQLAEIKHAR 244

Query: 241 LAMVAFLGFAVQAAVTGKGPLNNWATHLSDPLHTTIIDSFSS 283
           LAMVAFLGFAVQAAVTGKGPLNNWATHLSDPLHTTIIDSFSS
Sbjct: 245 LAMVAFLGFAVQAAVTGKGPLNNWATHLSDPLHTTIIDSFSS 286

[Close]

BLAST of MS013942 vs. ExPASy TrEMBL
Match: A0A5D3BBB3 (Chlorophyll a-b binding protein, chloroplastic OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold78209G00840 PE=3 SV=1)

HSP 1 Score: 545.4 bits (1404), Expect = 1.4e-151
Identity = 268/283 (94.70%), Postives = 276/283 (97.53%), Query Frame = 0


Query: 2   ATAAATSSFIGTRLPDVRPSSGRVQARFSFGKKKTAPKK--SSKQISDRPLWFPGAKAPE 61
           ATAAATSSFIGTRL ++ PSSGRVQARF FGKKK+ PKK  SSK ISDRPLWFPGAKAPE
Sbjct: 2   ATAAATSSFIGTRLAEIVPSSGRVQARFGFGKKKSPPKKSPSSKGISDRPLWFPGAKAPE 61

Query: 62  WLDGSLVGDYGFDPFGLGKPAEYLQYDLDSLDQNLAKNVAGDIIGTRFENSDVKSTPFQP 121
           WLDGSLVGDYGFDPFGLGKPAEYLQYDLDSLDQNLAKNVAGDIIGTRFE+++VKSTPFQP
Sbjct: 62  WLDGSLVGDYGFDPFGLGKPAEYLQYDLDSLDQNLAKNVAGDIIGTRFESAEVKSTPFQP 121

Query: 122 YTEVFGLQRFRECELIHGRWAMLATLGALSVEWLTGVTWQDAGKVELVEGSSYLGQPLPF 181
           YTEVFGLQRFRECELIHGRWAMLATLGALSVEWLTGVTWQDAGKVELVEGSSYLGQPLPF
Sbjct: 122 YTEVFGLQRFRECELIHGRWAMLATLGALSVEWLTGVTWQDAGKVELVEGSSYLGQPLPF 181

Query: 182 SITTLIWIEVLVIGYIEFQRNAELDPEKRLYPGGKFFDPLGLAEDPEKKAVLQLAEIKHA 241
           S+TTLIWIEVLVIGYIEFQRNAELDPEKRLYPGGKFFDPLGLAEDPEKKAVLQLAEIKHA
Sbjct: 182 SLTTLIWIEVLVIGYIEFQRNAELDPEKRLYPGGKFFDPLGLAEDPEKKAVLQLAEIKHA 241

Query: 242 RLAMVAFLGFAVQAAVTGKGPLNNWATHLSDPLHTTIIDSFSS 283
           RLAMVAFLGFAVQAAVTGKGPLNNWATHLSDPLHTTIID+FSS
Sbjct: 242 RLAMVAFLGFAVQAAVTGKGPLNNWATHLSDPLHTTIIDNFSS 284

[Close]

BLAST of MS013942 vs. ExPASy TrEMBL
Match: A0A0A0KXI3 (Chlorophyll a-b binding protein, chloroplastic OS=Cucumis sativus OX=3659 GN=Csa_4G308550 PE=3 SV=1)

HSP 1 Score: 545.4 bits (1404), Expect = 1.4e-151
Identity = 268/283 (94.70%), Postives = 276/283 (97.53%), Query Frame = 0


Query: 2   ATAAATSSFIGTRLPDVRPSSGRVQARFSFGKKKTAPKK--SSKQISDRPLWFPGAKAPE 61
           ATAAATSSF+GTRL ++ PSSGRVQARF FGKKK+ PKK  SSK ISDRPLWFPGAKAPE
Sbjct: 2   ATAAATSSFLGTRLAEIVPSSGRVQARFGFGKKKSPPKKSPSSKVISDRPLWFPGAKAPE 61

Query: 62  WLDGSLVGDYGFDPFGLGKPAEYLQYDLDSLDQNLAKNVAGDIIGTRFENSDVKSTPFQP 121
           WLDGSLVGDYGFDPFGLGKPAEYLQYDLDSLDQNLAKNVAGDIIGTRFE+++VKSTPFQP
Sbjct: 62  WLDGSLVGDYGFDPFGLGKPAEYLQYDLDSLDQNLAKNVAGDIIGTRFESAEVKSTPFQP 121

Query: 122 YTEVFGLQRFRECELIHGRWAMLATLGALSVEWLTGVTWQDAGKVELVEGSSYLGQPLPF 181
           YTEVFGLQRFRECELIHGRWAMLATLGALSVEWLTGVTWQDAGKVELVEGSSYLGQPLPF
Sbjct: 122 YTEVFGLQRFRECELIHGRWAMLATLGALSVEWLTGVTWQDAGKVELVEGSSYLGQPLPF 181

Query: 182 SITTLIWIEVLVIGYIEFQRNAELDPEKRLYPGGKFFDPLGLAEDPEKKAVLQLAEIKHA 241
           SITTLIWIEVLVIGYIEFQRNAELDPEKRLYPGGKFFDPLGLAEDPEKKAVLQLAEIKHA
Sbjct: 182 SITTLIWIEVLVIGYIEFQRNAELDPEKRLYPGGKFFDPLGLAEDPEKKAVLQLAEIKHA 241

Query: 242 RLAMVAFLGFAVQAAVTGKGPLNNWATHLSDPLHTTIIDSFSS 283
           RLAMVAFLGFAVQAAVTGKGPLNNWATHLSDPLHTTIID+FSS
Sbjct: 242 RLAMVAFLGFAVQAAVTGKGPLNNWATHLSDPLHTTIIDNFSS 284

[Close]

BLAST of MS013942 vs. ExPASy TrEMBL
Match: A0A1S3BMH8 (Chlorophyll a-b binding protein, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103491174 PE=3 SV=1)

HSP 1 Score: 545.4 bits (1404), Expect = 1.4e-151
Identity = 268/283 (94.70%), Postives = 276/283 (97.53%), Query Frame = 0


Query: 2   ATAAATSSFIGTRLPDVRPSSGRVQARFSFGKKKTAPKK--SSKQISDRPLWFPGAKAPE 61
           ATAAATSSFIGTRL ++ PSSGRVQARF FGKKK+ PKK  SSK ISDRPLWFPGAKAPE
Sbjct: 2   ATAAATSSFIGTRLAEIVPSSGRVQARFGFGKKKSPPKKSPSSKGISDRPLWFPGAKAPE 61

Query: 62  WLDGSLVGDYGFDPFGLGKPAEYLQYDLDSLDQNLAKNVAGDIIGTRFENSDVKSTPFQP 121
           WLDGSLVGDYGFDPFGLGKPAEYLQYDLDSLDQNLAKNVAGDIIGTRFE+++VKSTPFQP
Sbjct: 62  WLDGSLVGDYGFDPFGLGKPAEYLQYDLDSLDQNLAKNVAGDIIGTRFESAEVKSTPFQP 121

Query: 122 YTEVFGLQRFRECELIHGRWAMLATLGALSVEWLTGVTWQDAGKVELVEGSSYLGQPLPF 181
           YTEVFGLQRFRECELIHGRWAMLATLGALSVEWLTGVTWQDAGKVELVEGSSYLGQPLPF
Sbjct: 122 YTEVFGLQRFRECELIHGRWAMLATLGALSVEWLTGVTWQDAGKVELVEGSSYLGQPLPF 181

Query: 182 SITTLIWIEVLVIGYIEFQRNAELDPEKRLYPGGKFFDPLGLAEDPEKKAVLQLAEIKHA 241
           S+TTLIWIEVLVIGYIEFQRNAELDPEKRLYPGGKFFDPLGLAEDPEKKAVLQLAEIKHA
Sbjct: 182 SLTTLIWIEVLVIGYIEFQRNAELDPEKRLYPGGKFFDPLGLAEDPEKKAVLQLAEIKHA 241

Query: 242 RLAMVAFLGFAVQAAVTGKGPLNNWATHLSDPLHTTIIDSFSS 283
           RLAMVAFLGFAVQAAVTGKGPLNNWATHLSDPLHTTIID+FSS
Sbjct: 242 RLAMVAFLGFAVQAAVTGKGPLNNWATHLSDPLHTTIIDNFSS 284

[Close]

BLAST of MS013942 vs. ExPASy TrEMBL
Match: A0A6J1IPG0 (Chlorophyll a-b binding protein, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111478268 PE=3 SV=1)

HSP 1 Score: 543.9 bits (1400), Expect = 4.0e-151
Identity = 269/284 (94.72%), Postives = 275/284 (96.83%), Query Frame = 0


Query: 1   TATAAATSSFIGTRLPDVRPSSGRVQARFSFGKKKTAPKK--SSKQISDRPLWFPGAKAP 60
           TATAAATSSFIGTRL DVRPSSGRVQARF FGKKK   KK  SSK ISDRPLWFPGAKAP
Sbjct: 3   TATAAATSSFIGTRLVDVRPSSGRVQARFGFGKKKAPAKKSPSSKTISDRPLWFPGAKAP 62

Query: 61  EWLDGSLVGDYGFDPFGLGKPAEYLQYDLDSLDQNLAKNVAGDIIGTRFENSDVKSTPFQ 120
           EWLDGSLVGDYGFDPFGLGKPAEYLQYDLDSLDQNLAKNVAGDIIGTRFEN+DVKSTPFQ
Sbjct: 63  EWLDGSLVGDYGFDPFGLGKPAEYLQYDLDSLDQNLAKNVAGDIIGTRFENADVKSTPFQ 122

Query: 121 PYTEVFGLQRFRECELIHGRWAMLATLGALSVEWLTGVTWQDAGKVELVEGSSYLGQPLP 180
           PY+EVFGLQRFRECELIHGRWAMLATLGAL+VE LTG+TWQDAGKVELVEGSSYLGQPLP
Sbjct: 123 PYSEVFGLQRFRECELIHGRWAMLATLGALAVEGLTGITWQDAGKVELVEGSSYLGQPLP 182

Query: 181 FSITTLIWIEVLVIGYIEFQRNAELDPEKRLYPGGKFFDPLGLAEDPEKKAVLQLAEIKH 240
           FS+TTLIWIEVLVIGYIEFQRNAELDPEKRLYPGGKFFDPLGLAEDPEKKAVLQLAEIKH
Sbjct: 183 FSLTTLIWIEVLVIGYIEFQRNAELDPEKRLYPGGKFFDPLGLAEDPEKKAVLQLAEIKH 242

Query: 241 ARLAMVAFLGFAVQAAVTGKGPLNNWATHLSDPLHTTIIDSFSS 283
           ARLAMVAFLGFAVQAAVTGKGPLNNWATHLSDPLHTTIID+FSS
Sbjct: 243 ARLAMVAFLGFAVQAAVTGKGPLNNWATHLSDPLHTTIIDNFSS 286

[Close]

BLAST of MS013942 vs. TAIR 10
Match: AT5G01530.1 (light harvesting complex photosystem II )

HSP 1 Score: 494.6 bits (1272), Expect = 5.3e-140
Identity = 241/285 (84.56%), Postives = 261/285 (91.58%), Query Frame = 0


Query: 1   TATAAATSSFIGTRL-PDVRPSSGRVQARFSFGKKKTAPKKSSKQ--ISDRPLWFPGAKA 60
           +A AAA SS +GTR+ P + P SGR  A F FGKKK APKKS+K+   +DRPLW+PGA +
Sbjct: 5   SAAAAAASSIMGTRVAPGIHPGSGRFTAVFGFGKKKAAPKKSAKKTVTTDRPLWYPGAIS 64

Query: 61  PEWLDGSLVGDYGFDPFGLGKPAEYLQYDLDSLDQNLAKNVAGDIIGTRFENSDVKSTPF 120
           P+WLDGSLVGDYGFDPFGLGKPAEYLQ+D+DSLDQNLAKN+AGD+IGTR E +D KSTPF
Sbjct: 65  PDWLDGSLVGDYGFDPFGLGKPAEYLQFDIDSLDQNLAKNLAGDVIGTRTEAADAKSTPF 124

Query: 121 QPYTEVFGLQRFRECELIHGRWAMLATLGALSVEWLTGVTWQDAGKVELVEGSSYLGQPL 180
           QPY+EVFG+QRFRECELIHGRWAMLATLGALSVEWLTGVTWQDAGKVELV+GSSYLGQPL
Sbjct: 125 QPYSEVFGIQRFRECELIHGRWAMLATLGALSVEWLTGVTWQDAGKVELVDGSSYLGQPL 184

Query: 181 PFSITTLIWIEVLVIGYIEFQRNAELDPEKRLYPGGKFFDPLGLAEDPEKKAVLQLAEIK 240
           PFSI+TLIWIEVLVIGYIEFQRNAELD EKRLYPGGKFFDPLGLA DPEK A LQLAEIK
Sbjct: 185 PFSISTLIWIEVLVIGYIEFQRNAELDSEKRLYPGGKFFDPLGLAADPEKTAQLQLAEIK 244

Query: 241 HARLAMVAFLGFAVQAAVTGKGPLNNWATHLSDPLHTTIIDSFSS 283
           HARLAMVAFLGFAVQAA TGKGPLNNWATHLSDPLHTTIID+FSS
Sbjct: 245 HARLAMVAFLGFAVQAAATGKGPLNNWATHLSDPLHTTIIDTFSS 289

[Close]

BLAST of MS013942 vs. TAIR 10
Match: AT3G08940.2 (light harvesting complex photosystem II )

HSP 1 Score: 488.0 bits (1255), Expect = 5.0e-138
Identity = 238/283 (84.10%), Postives = 257/283 (90.81%), Query Frame = 0


Query: 1   TATAAATSSFIGTR-LPDVRPSSGRVQARFSFGKKKTAPKKSSKQISDRPLWFPGAKAPE 60
           T+TAAA SS +GTR + D+  +S R  ARF FG KK +PKK+   ISDRPLWFPGAK+PE
Sbjct: 4   TSTAAAASSIMGTRVVSDISSNSSRFTARFGFGTKKASPKKAKTVISDRPLWFPGAKSPE 63

Query: 61  WLDGSLVGDYGFDPFGLGKPAEYLQYDLDSLDQNLAKNVAGDIIGTRFENSDVKSTPFQP 120
           +LDGSLVGDYGFDPFGLGKPAEYLQ+DLDSLDQNLAKN+ G++IGTR E  D KSTPFQP
Sbjct: 64  YLDGSLVGDYGFDPFGLGKPAEYLQFDLDSLDQNLAKNLYGEVIGTRTEAVDPKSTPFQP 123

Query: 121 YTEVFGLQRFRECELIHGRWAMLATLGALSVEWLTGVTWQDAGKVELVEGSSYLGQPLPF 180
           Y+EVFGLQRFRECELIHGRWAMLATLGA++VEWLTGVTWQDAGKVELV+GSSYLGQPLPF
Sbjct: 124 YSEVFGLQRFRECELIHGRWAMLATLGAITVEWLTGVTWQDAGKVELVDGSSYLGQPLPF 183

Query: 181 SITTLIWIEVLVIGYIEFQRNAELDPEKRLYPGGKFFDPLGLAEDPEKKAVLQLAEIKHA 240
           SI+TLIWIEVLVIGYIEFQRNAELD EKRLYPGGKFFDPLGLA DP KKA LQLAEIKHA
Sbjct: 184 SISTLIWIEVLVIGYIEFQRNAELDSEKRLYPGGKFFDPLGLASDPVKKAQLQLAEIKHA 243

Query: 241 RLAMVAFLGFAVQAAVTGKGPLNNWATHLSDPLHTTIIDSFSS 283
           RLAMV FLGFAVQAA TGKGPLNNWATHLSDPLHTTIID+FSS
Sbjct: 244 RLAMVGFLGFAVQAAATGKGPLNNWATHLSDPLHTTIIDTFSS 286

[Close]

BLAST of MS013942 vs. TAIR 10
Match: AT2G40100.1 (light harvesting complex photosystem II )

HSP 1 Score: 414.1 bits (1063), Expect = 9.2e-116
Identity = 207/272 (76.10%), Postives = 231/272 (84.93%), Query Frame = 0


Query: 1   TATAAATSSFIGTRLPDVRPSSGRVQAR--FSFGKKKTA-PKKSSKQI---SDRPLWFPG 60
           T TAAA S   G R+ D RP +GRVQAR  FSFGKKK A P K S+Q+    DR +WFPG
Sbjct: 3   TTTAAAASGIFGIRIQDPRPGTGRVQARFGFSFGKKKPAPPPKKSRQVQDDGDRLVWFPG 62

Query: 61  AKAPEWLDGSLVGDYGFDPFGLGKPAEYLQYDLDSLDQNLAKNVAGDIIGTRFENSDVKS 120
           A  PEWLDGS++GD GFDPFGLGKPAEYLQYD D LDQNLAKNVAGDIIG   E+S++K 
Sbjct: 63  ANPPEWLDGSMIGDRGFDPFGLGKPAEYLQYDFDGLDQNLAKNVAGDIIGIIQESSEIKP 122

Query: 121 TPFQPYTEVFGLQRFRECELIHGRWAMLATLGALSVEWLTGVTWQDAGKVELVEGSSYLG 180
           TPFQPYTEVFG+QRFRECELIHGRWAML TLGA++VE LTG+ WQDAGKVELVEGSSYLG
Sbjct: 123 TPFQPYTEVFGIQRFRECELIHGRWAMLGTLGAIAVEALTGIAWQDAGKVELVEGSSYLG 182

Query: 181 QPLPFSITTLIWIEVLVIGYIEFQRNAELDPEKRLYPGGKFFDPLGLAEDPEKKAVLQLA 240
           QPLPFS+TTLIWIEVLV+GYIEFQRN+ELDPEKR+YPGG +FDPLGLA DPEK   L+LA
Sbjct: 183 QPLPFSLTTLIWIEVLVVGYIEFQRNSELDPEKRIYPGG-YFDPLGLAADPEKLDTLKLA 242

Query: 241 EIKHARLAMVAFLGFAVQAAVTGKGPLNNWAT 267
           EIKH+RLAMVAFL FA+QAA TGKGP++  AT
Sbjct: 243 EIKHSRLAMVAFLIFALQAAFTGKGPVSFLAT 273

[Close]

BLAST of MS013942 vs. TAIR 10
Match: AT3G08940.1 (light harvesting complex photosystem II )

HSP 1 Score: 271.9 bits (694), Expect = 5.6e-73
Identity = 134/180 (74.44%), Postives = 151/180 (83.89%), Query Frame = 0


Query: 1   TATAAATSSFIGTR-LPDVRPSSGRVQARFSFGKKKTAPKKSSKQISDRPLWFPGAKAPE 60
           T+TAAA SS +GTR + D+  +S R  ARF FG KK +PKK+   ISDRPLWFPGAK+PE
Sbjct: 4   TSTAAAASSIMGTRVVSDISSNSSRFTARFGFGTKKASPKKAKTVISDRPLWFPGAKSPE 63

Query: 61  WLDGSLVGDYGFDPFGLGKPAEYLQYDLDSLDQNLAKNVAGDIIGTRFENSDVKSTPFQP 120
           +LDGSLVGDYGFDPFGLGKPAEYLQ+DLDSLDQNLAKN+ G++IGTR E  D KSTPFQP
Sbjct: 64  YLDGSLVGDYGFDPFGLGKPAEYLQFDLDSLDQNLAKNLYGEVIGTRTEAVDPKSTPFQP 123

Query: 121 YTEVFGLQRFRECELIHGRWAMLATLGALSVEWLTGVTWQDAGKVELVEGSSYLGQPLPF 180
           Y+EVFGLQRFRECELIHGRWAMLATLGA++VEWLTGVTWQDAGKV  +  SS L   L F
Sbjct: 124 YSEVFGLQRFRECELIHGRWAMLATLGAITVEWLTGVTWQDAGKVSPLFFSSLLRLCLAF 183

[Close]

BLAST of MS013942 vs. TAIR 10
Match: AT2G40100.2 (light harvesting complex photosystem II )

HSP 1 Score: 253.4 bits (646), Expect = 2.1e-67
Identity = 125/171 (73.10%), Postives = 139/171 (81.29%), Query Frame = 0


Query: 1   TATAAATSSFIGTRLPDVRPSSGRVQAR--FSFGKKKTA-PKKSSKQI---SDRPLWFPG 60
           T TAAA S   G R+ D RP +GRVQAR  FSFGKKK A P K S+Q+    DR +WFPG
Sbjct: 3   TTTAAAASGIFGIRIQDPRPGTGRVQARFGFSFGKKKPAPPPKKSRQVQDDGDRLVWFPG 62

Query: 61  AKAPEWLDGSLVGDYGFDPFGLGKPAEYLQYDLDSLDQNLAKNVAGDIIGTRFENSDVKS 120
           A  PEWLDGS++GD GFDPFGLGKPAEYLQYD D LDQNLAKNVAGDIIG   E+S++K 
Sbjct: 63  ANPPEWLDGSMIGDRGFDPFGLGKPAEYLQYDFDGLDQNLAKNVAGDIIGIIQESSEIKP 122

Query: 121 TPFQPYTEVFGLQRFRECELIHGRWAMLATLGALSVEWLTGVTWQDAGKVE 166
           TPFQPYTEVFG+QRFRECELIHGRWAML TLGA++VE LTG+ WQDAGKVE
Sbjct: 123 TPFQPYTEVFGIQRFRECELIHGRWAMLGTLGAIAVEALTGIAWQDAGKVE 173

The following BLAST results are available for this feature:

BLAST of MS013942 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022151483.1	5.7e-160	100.00	chlorophyll a-b binding protein CP29.1, chloroplastic [Momordica charantia]	[more]
XP_004147887.1	2.8e-151	94.70	chlorophyll a-b binding protein CP29.1, chloroplastic [Cucumis sativus] >KGN5436...	[more]
XP_008449241.1	2.8e-151	94.70	PREDICTED: chlorophyll a-b binding protein CP29.1, chloroplastic-like [Cucumis m...	[more]
XP_038882769.1	2.8e-151	94.70	chlorophyll a-b binding protein CP29.1, chloroplastic-like [Benincasa hispida]	[more]
XP_022978220.1	8.2e-151	94.72	chlorophyll a-b binding protein CP29.1, chloroplastic-like [Cucurbita maxima]	[more]

BLAST of MS013942 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q07473	7.5e-139	84.56	Chlorophyll a-b binding protein CP29.1, chloroplastic OS=Arabidopsis thaliana OX...	[more]
Q9XF88	7.0e-137	84.10	Chlorophyll a-b binding protein CP29.2, chloroplastic OS=Arabidopsis thaliana OX...	[more]
Q9S7W1	1.3e-114	76.10	Chlorophyll a-b binding protein CP29.3, chloroplastic OS=Arabidopsis thaliana OX...	[more]
Q93WD2	9.4e-65	51.70	Chlorophyll a-b binding protein CP29 OS=Chlamydomonas reinhardtii OX=3055 GN=Lhc...	[more]
Q01667	1.2e-38	41.63	Chlorophyll a-b binding protein 6, chloroplastic OS=Arabidopsis thaliana OX=3702...	[more]

BLAST of MS013942 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DCA5	2.8e-160	100.00	Chlorophyll a-b binding protein, chloroplastic OS=Momordica charantia OX=3673 GN...	[more]
A0A5D3BBB3	1.4e-151	94.70	Chlorophyll a-b binding protein, chloroplastic OS=Cucumis melo var. makuwa OX=11...	[more]
A0A0A0KXI3	1.4e-151	94.70	Chlorophyll a-b binding protein, chloroplastic OS=Cucumis sativus OX=3659 GN=Csa...	[more]
A0A1S3BMH8	1.4e-151	94.70	Chlorophyll a-b binding protein, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103...	[more]
A0A6J1IPG0	4.0e-151	94.72	Chlorophyll a-b binding protein, chloroplastic OS=Cucurbita maxima OX=3661 GN=LO...	[more]

BLAST of MS013942 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G01530.1	5.3e-140	84.56	light harvesting complex photosystem II	[more]
AT3G08940.2	5.0e-138	84.10	light harvesting complex photosystem II	[more]
AT2G40100.1	9.2e-116	76.10	light harvesting complex photosystem II	[more]
AT3G08940.1	5.6e-73	74.44	light harvesting complex photosystem II	[more]
AT2G40100.2	2.1e-67	73.10	light harvesting complex photosystem II	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR023329	Chlorophyll a/b binding domain superfamily	GENE3D	1.10.3460.10	Chlorophyll a/b binding protein domain	coord: 51..282 e-value: 7.3E-70 score: 236.9
IPR022796	Chlorophyll A-B binding protein	PFAM	PF00504	Chloroa_b-bind	coord: 57..253 e-value: 3.8E-51 score: 173.8
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..24
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 29..48
None	No IPR available	PANTHER	PTHR21649:SF71	CHLOROPHYLL A-B BINDING PROTEIN CP29.2, CHLOROPLASTIC	coord: 1..282
None	No IPR available	SUPERFAMILY	103511	Chlorophyll a-b binding protein	coord: 43..280
IPR001344	Chlorophyll A-B binding protein, plant and chromista	PANTHER	PTHR21649	CHLOROPHYLL A/B BINDING PROTEIN	coord: 1..282

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS013942.1	MS013942.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009765	photosynthesis, light harvesting
cellular_component	GO:0016020	membrane