MS013911 (gene) Bitter gourd (TR) v1

Overview


Name	MS013911
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	HTH myb-type domain-containing protein
Location	scaffold607: 794210 .. 795204 (+)
RNA-Seq Expression	MS013911
Synteny	MS013911

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

GCAGCAGTAGAATGTTCAAACAGAAGTAGGAGTGAAGATGATGAGAAGAATTGTAATAATCAGAGGGAATTAGGAAACGAAGGGAGCTCCAGCAACAGCACCATTGAAGAGAATAATACTCACGATCATAATCAGAAGAATAAGCCGAGCGTGCGGCCGTACGTTAGATCCAAACTCCCCCGACTCCGGTGGACGCCTGATCTCCATCACCGTTTCGTTCATGCTGTCGAAAGACTAGGCGGTCAAGAAAGTAATTCTCTTTCTCAATTTCATCCTTTACCCTCTCCGGCTGGCTGTCAATATGAATAAATGATTAAATTACAAATACCCGTTAACTTCAATTTTTGAATTGAATCCTAGTTTAACATGAATATCATAAGATTTTGAGTTCGAATCAGGTAATGTCCTTGTGATTTATTGAAGGGGTAATAATGTAATGTGGAGATGAATCACAATTTCTCTCTTTTTCTACAATTTATGATCTTAATTTGATATGTTATGCTGATGATTTTGGTAATTAATTGCAGATGCTACCCCTAAGTTGGTTCTTCAGTTAATGAACATCAAAGGACTGAACATCGCCCATGTAAAGAGCCACCTTCAGGTTAAACTCTCACTTGAAGAAAAATTTACATAGATAATATTATGTAATTTTTCTATTATTTAACTATTTTCTTCTTCACGAAATCAATTTCTTCAGATGTACAGAAGCAAGAAGATCAACGAACATGGCCAAGGTATCAACTAATTTTAATCAACATATTTTCATTAATTTAATTAATTTCCCCATTTCTATTTCAGTTCTGAAAATATCCCCCAAAAAAATAATCAATTAAAGGACGAAATTTCTTTTAATTTATTGACTTTTAATGCAAAATGTAGTGGCGGATCAAAGGCTTGTGATGGCAGAAACTGGCGATCGCAACATATTTACTGTCAGCCAAATCCCTATGTTCCAACGCTATAACCAAACCTACCCCTCCAATATTTTCCGG

mRNA sequence

GCAGCAGTAGAATGTTCAAACAGAAGTAGGAGTGAAGATGATGAGAAGAATTGTAATAATCAGAGGGAATTAGGAAACGAAGGGAGCTCCAGCAACAGCACCATTGAAGAGAATAATACTCACGATCATAATCAGAAGAATAAGCCGAGCGTGCGGCCGTACGTTAGATCCAAACTCCCCCGACTCCGGTGGACGCCTGATCTCCATCACCGTTTCGTTCATGCTGTCGAAAGACTAGGCGGTCAAGAAAATGCTACCCCTAAGTTGGTTCTTCAGTTAATGAACATCAAAGGACTGAACATCGCCCATGTAAAGAGCCACCTTCAGATGTACAGAAGCAAGAAGATCAACGAACATGGCCAAGTGGCGGATCAAAGGCTTGTGATGGCAGAAACTGGCGATCGCAACATATTTACTGTCAGCCAAATCCCTATGTTCCAACGCTATAACCAAACCTACCCCTCCAATATTTTCCGG

Coding sequence (CDS)

GCAGCAGTAGAATGTTCAAACAGAAGTAGGAGTGAAGATGATGAGAAGAATTGTAATAATCAGAGGGAATTAGGAAACGAAGGGAGCTCCAGCAACAGCACCATTGAAGAGAATAATACTCACGATCATAATCAGAAGAATAAGCCGAGCGTGCGGCCGTACGTTAGATCCAAACTCCCCCGACTCCGGTGGACGCCTGATCTCCATCACCGTTTCGTTCATGCTGTCGAAAGACTAGGCGGTCAAGAAAATGCTACCCCTAAGTTGGTTCTTCAGTTAATGAACATCAAAGGACTGAACATCGCCCATGTAAAGAGCCACCTTCAGATGTACAGAAGCAAGAAGATCAACGAACATGGCCAAGTGGCGGATCAAAGGCTTGTGATGGCAGAAACTGGCGATCGCAACATATTTACTGTCAGCCAAATCCCTATGTTCCAACGCTATAACCAAACCTACCCCTCCAATATTTTCCGG

Protein sequence

AAVECSNRSRSEDDEKNCNNQRELGNEGSSSNSTIEENNTHDHNQKNKPSVRPYVRSKLPRLRWTPDLHHRFVHAVERLGGQENATPKLVLQLMNIKGLNIAHVKSHLQMYRSKKINEHGQVADQRLVMAETGDRNIFTVSQIPMFQRYNQTYPSNIFR

Homology

[Close]

BLAST of MS013911 vs. NCBI nr
Match: XP_022144064.1 (uncharacterized protein LOC111013845 [Momordica charantia])

HSP 1 Score: 316.6 bits (810), Expect = 1.2e-82
Identity = 159/159 (100.00%), Postives = 159/159 (100.00%), Query Frame = 0


Query: 1   AAVECSNRSRSEDDEKNCNNQRELGNEGSSSNSTIEENNTHDHNQKNKPSVRPYVRSKLP 60
           AAVECSNRSRSEDDEKNCNNQRELGNEGSSSNSTIEENNTHDHNQKNKPSVRPYVRSKLP
Sbjct: 8   AAVECSNRSRSEDDEKNCNNQRELGNEGSSSNSTIEENNTHDHNQKNKPSVRPYVRSKLP 67

Query: 61  RLRWTPDLHHRFVHAVERLGGQENATPKLVLQLMNIKGLNIAHVKSHLQMYRSKKINEHG 120
           RLRWTPDLHHRFVHAVERLGGQENATPKLVLQLMNIKGLNIAHVKSHLQMYRSKKINEHG
Sbjct: 68  RLRWTPDLHHRFVHAVERLGGQENATPKLVLQLMNIKGLNIAHVKSHLQMYRSKKINEHG 127

Query: 121 QVADQRLVMAETGDRNIFTVSQIPMFQRYNQTYPSNIFR 160
           QVADQRLVMAETGDRNIFTVSQIPMFQRYNQTYPSNIFR
Sbjct: 128 QVADQRLVMAETGDRNIFTVSQIPMFQRYNQTYPSNIFR 166

[Close]

BLAST of MS013911 vs. NCBI nr
Match: KAG7027421.1 (putative Myb family transcription factor, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 231.5 bits (589), Expect = 5.1e-57
Identity = 124/159 (77.99%), Postives = 139/159 (87.42%), Query Frame = 0


Query: 1   AAVECSNRSRSEDDEKNCNNQRELGNEGSSSNSTIEENNTHDHNQKNKPSVRPYVRSKLP 60
           AA ECSN+SRS+ ++    +Q ELGNEGSSSNSTIEEN   D  QK KP+VRPYVRSKLP
Sbjct: 14  AAAECSNKSRSDSNK----SQSELGNEGSSSNSTIEEN---DERQK-KPTVRPYVRSKLP 73

Query: 61  RLRWTPDLHHRFVHAVERLGGQENATPKLVLQLMNIKGLNIAHVKSHLQMYRSKKINEHG 120
           RLRWTPDLH RF+HAV+ LGGQ+NATPKLVLQLMNIKGL+IAHVKSHLQMYRSKK NE  
Sbjct: 74  RLRWTPDLHFRFLHAVQSLGGQQNATPKLVLQLMNIKGLSIAHVKSHLQMYRSKKSNEMT 133

Query: 121 QVADQRLVMAETGDRNIFTVSQIPMFQRYNQTYPSNIFR 160
            VADQR++M++T DRNIFTVSQIPMFQR+NQTYPSNIFR
Sbjct: 134 TVADQRVLMSQTSDRNIFTVSQIPMFQRHNQTYPSNIFR 164

[Close]

BLAST of MS013911 vs. NCBI nr
Match: KAG6595411.1 (putative Myb family transcription factor, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 231.5 bits (589), Expect = 5.1e-57
Identity = 124/159 (77.99%), Postives = 139/159 (87.42%), Query Frame = 0


Query: 1   AAVECSNRSRSEDDEKNCNNQRELGNEGSSSNSTIEENNTHDHNQKNKPSVRPYVRSKLP 60
           AA ECSN+SRS+ ++    +Q ELGNEGSSSNSTIEEN   D  QK KP+VRPYVRSKLP
Sbjct: 15  AAAECSNKSRSDSNK----SQSELGNEGSSSNSTIEEN---DERQK-KPTVRPYVRSKLP 74

Query: 61  RLRWTPDLHHRFVHAVERLGGQENATPKLVLQLMNIKGLNIAHVKSHLQMYRSKKINEHG 120
           RLRWTPDLH RF+HAV+ LGGQ+NATPKLVLQLMNIKGL+IAHVKSHLQMYRSKK NE  
Sbjct: 75  RLRWTPDLHFRFLHAVQSLGGQQNATPKLVLQLMNIKGLSIAHVKSHLQMYRSKKSNEMT 134

Query: 121 QVADQRLVMAETGDRNIFTVSQIPMFQRYNQTYPSNIFR 160
            VADQR++M++T DRNIFTVSQIPMFQR+NQTYPSNIFR
Sbjct: 135 TVADQRVLMSQTSDRNIFTVSQIPMFQRHNQTYPSNIFR 165

[Close]

BLAST of MS013911 vs. NCBI nr
Match: XP_022931927.1 (putative Myb family transcription factor At1g14600 [Cucurbita moschata])

HSP 1 Score: 231.5 bits (589), Expect = 5.1e-57
Identity = 124/159 (77.99%), Postives = 139/159 (87.42%), Query Frame = 0


Query: 1   AAVECSNRSRSEDDEKNCNNQRELGNEGSSSNSTIEENNTHDHNQKNKPSVRPYVRSKLP 60
           AA ECSN+SRS+ ++    +Q ELGNEGSSSNSTIEEN   D  QK KP+VRPYVRSKLP
Sbjct: 19  AAAECSNKSRSDSNK----SQSELGNEGSSSNSTIEEN---DERQK-KPTVRPYVRSKLP 78

Query: 61  RLRWTPDLHHRFVHAVERLGGQENATPKLVLQLMNIKGLNIAHVKSHLQMYRSKKINEHG 120
           RLRWTPDLH RF+HAV+ LGGQ+NATPKLVLQLMNIKGL+IAHVKSHLQMYRSKK NE  
Sbjct: 79  RLRWTPDLHFRFLHAVQSLGGQQNATPKLVLQLMNIKGLSIAHVKSHLQMYRSKKSNEMT 138

Query: 121 QVADQRLVMAETGDRNIFTVSQIPMFQRYNQTYPSNIFR 160
            VADQR++M++T DRNIFTVSQIPMFQR+NQTYPSNIFR
Sbjct: 139 TVADQRVLMSQTSDRNIFTVSQIPMFQRHNQTYPSNIFR 169

[Close]

BLAST of MS013911 vs. NCBI nr
Match: XP_023518589.1 (putative Myb family transcription factor At1g14600 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 231.5 bits (589), Expect = 5.1e-57
Identity = 124/159 (77.99%), Postives = 139/159 (87.42%), Query Frame = 0


Query: 1   AAVECSNRSRSEDDEKNCNNQRELGNEGSSSNSTIEENNTHDHNQKNKPSVRPYVRSKLP 60
           AA ECSN+SRS+ ++    +Q ELGNEGSSSNSTIEEN   D  QK KP+VRPYVRSKLP
Sbjct: 10  AAAECSNKSRSDSNK----SQSELGNEGSSSNSTIEEN---DERQK-KPTVRPYVRSKLP 69

Query: 61  RLRWTPDLHHRFVHAVERLGGQENATPKLVLQLMNIKGLNIAHVKSHLQMYRSKKINEHG 120
           RLRWTPDLH RF+HAV+ LGGQ+NATPKLVLQLMNIKGL+IAHVKSHLQMYRSKK NE  
Sbjct: 70  RLRWTPDLHFRFLHAVQSLGGQQNATPKLVLQLMNIKGLSIAHVKSHLQMYRSKKSNEMT 129

Query: 121 QVADQRLVMAETGDRNIFTVSQIPMFQRYNQTYPSNIFR 160
            VADQR++M++T DRNIFTVSQIPMFQR+NQTYPSNIFR
Sbjct: 130 TVADQRVLMSQTSDRNIFTVSQIPMFQRHNQTYPSNIFR 160

[Close]

BLAST of MS013911 vs. ExPASy Swiss-Prot
Match: Q700D9 (Putative Myb family transcription factor At1g14600 OS=Arabidopsis thaliana OX=3702 GN=At1g14600 PE=2 SV=2)

HSP 1 Score: 106.7 bits (265), Expect = 2.5e-22
Identity = 49/71 (69.01%), Postives = 59/71 (83.10%), Query Frame = 0


Query: 51  VRPYVRSKLPRLRWTPDLHHRFVHAVERLGGQENATPKLVLQLMNIKGLNIAHVKSHLQM 110
           VRPYVRS +PRLRWTP+LH  FVHAV+ LGGQ  ATPKLVL++M++KGL I+HVKSHLQM
Sbjct: 15  VRPYVRSPVPRLRWTPELHRSFVHAVDLLGGQYKATPKLVLKIMDVKGLTISHVKSHLQM 74

Query: 111 YRSKKINEHGQ 122
           YR  +I   G+
Sbjct: 75  YRGSRITLLGK 85

[Close]

BLAST of MS013911 vs. ExPASy Swiss-Prot
Match: A3AWH5 (Myb family transcription factor MOF1 OS=Oryza sativa subsp. japonica OX=39947 GN=MOF1 PE=1 SV=1)

HSP 1 Score: 105.5 bits (262), Expect = 5.5e-22
Identity = 47/71 (66.20%), Postives = 58/71 (81.69%), Query Frame = 0


Query: 50  SVRPYVRSKLPRLRWTPDLHHRFVHAVERLGGQENATPKLVLQLMNIKGLNIAHVKSHLQ 109
           +VR Y+RSK+PRLRWT +LH  FV A+E LGGQ+ ATPKL+LQLM +KGL I+HVKSHLQ
Sbjct: 13  AVRQYIRSKVPRLRWTGELHCSFVQAIEFLGGQDKATPKLILQLMGVKGLTISHVKSHLQ 72

Query: 110 MYRSKKINEHG 121
           MYR  ++  HG
Sbjct: 73  MYRCSRLGSHG 83

[Close]

BLAST of MS013911 vs. ExPASy Swiss-Prot
Match: A0A0P0X0C0 (Myb family transcription factor MPH1 OS=Oryza sativa subsp. japonica OX=39947 GN=MPH1 PE=2 SV=1)

HSP 1 Score: 99.8 bits (247), Expect = 3.0e-20
Identity = 46/80 (57.50%), Postives = 62/80 (77.50%), Query Frame = 0


Query: 51  VRPYVRSKLPRLRWTPDLHHRFVHAVERLGGQENATPKLVLQLMNIKGLNIAHVKSHLQM 110
           VR Y RS++PR+RWT ++H +FV AVE LGGQ+ ATPK +LQLM +KG++I+H+KSHLQM
Sbjct: 9   VRQYNRSEVPRMRWTEEMHRQFVEAVECLGGQDEATPKRILQLMGVKGVSISHIKSHLQM 68

Query: 111 YRSKKINEHGQVADQRLVMA 131
           YRS   N +  V+ Q+L  A
Sbjct: 69  YRSGSSNSNHPVSLQKLTSA 88

[Close]

BLAST of MS013911 vs. ExPASy Swiss-Prot
Match: Q9C616 (Probable transcription factor KAN2 OS=Arabidopsis thaliana OX=3702 GN=KAN2 PE=2 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 3.7e-18
Identity = 53/115 (46.09%), Postives = 70/115 (60.87%), Query Frame = 0


Query: 25  GNEGSSSNSTIEENNTHDHNQKNKPSVR-----PYVRS-KLPRLRWTPDLHHRFVHAVER 84
           GN  S + S++   N H+H+ +     R     P  RS + PR+RWT  LH RFVHAVE 
Sbjct: 173 GNNNSFNTSSVSNPNYHNHHHQTLNRARFMPRFPAKRSMRAPRMRWTTTLHARFVHAVEL 232

Query: 85  LGGQENATPKLVLQLMNIKGLNIAHVKSHLQMYRSKKINEHGQVADQRLVMAETG 134
           LGG E ATPK VL+LM++K L +AHVKSHLQMYR+ K  +    +  +  + E G
Sbjct: 233 LGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRTVKTTDKAAASSGQSDVYENG 287

[Close]

BLAST of MS013911 vs. ExPASy Swiss-Prot
Match: Q93WJ9 (Transcription repressor KAN1 OS=Arabidopsis thaliana OX=3702 GN=KAN1 PE=1 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 1.2e-16
Identity = 49/100 (49.00%), Postives = 64/100 (64.00%), Query Frame = 0


Query: 19  NNQRELGNEGSSSNSTIEENNTHDH---NQKNKPSVRPYVRSKLPRLRWTPDLHHRFVHA 78
           ++  + G  GSS +S+   +N H H     +  P +      + PR+RWT  LH RFVHA
Sbjct: 176 HHHNQYGVVGSSDSSSPHHHNHHHHGMIRSRFLPKMPTKRSMRAPRMRWTSSLHARFVHA 235

Query: 79  VERLGGQENATPKLVLQLMNIKGLNIAHVKSHLQMYRSKK 116
           VE LGG E ATPK VL+LM++K L +AHVKSHLQMYR+ K
Sbjct: 236 VELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRTVK 275

[Close]

BLAST of MS013911 vs. ExPASy TrEMBL
Match: A0A6J1CR72 (uncharacterized protein LOC111013845 OS=Momordica charantia OX=3673 GN=LOC111013845 PE=4 SV=1)

HSP 1 Score: 316.6 bits (810), Expect = 5.8e-83
Identity = 159/159 (100.00%), Postives = 159/159 (100.00%), Query Frame = 0


Query: 1   AAVECSNRSRSEDDEKNCNNQRELGNEGSSSNSTIEENNTHDHNQKNKPSVRPYVRSKLP 60
           AAVECSNRSRSEDDEKNCNNQRELGNEGSSSNSTIEENNTHDHNQKNKPSVRPYVRSKLP
Sbjct: 8   AAVECSNRSRSEDDEKNCNNQRELGNEGSSSNSTIEENNTHDHNQKNKPSVRPYVRSKLP 67

Query: 61  RLRWTPDLHHRFVHAVERLGGQENATPKLVLQLMNIKGLNIAHVKSHLQMYRSKKINEHG 120
           RLRWTPDLHHRFVHAVERLGGQENATPKLVLQLMNIKGLNIAHVKSHLQMYRSKKINEHG
Sbjct: 68  RLRWTPDLHHRFVHAVERLGGQENATPKLVLQLMNIKGLNIAHVKSHLQMYRSKKINEHG 127

Query: 121 QVADQRLVMAETGDRNIFTVSQIPMFQRYNQTYPSNIFR 160
           QVADQRLVMAETGDRNIFTVSQIPMFQRYNQTYPSNIFR
Sbjct: 128 QVADQRLVMAETGDRNIFTVSQIPMFQRYNQTYPSNIFR 166

[Close]

BLAST of MS013911 vs. ExPASy TrEMBL
Match: A0A6J1EV69 (putative Myb family transcription factor At1g14600 OS=Cucurbita moschata OX=3662 GN=LOC111438202 PE=4 SV=1)

HSP 1 Score: 231.5 bits (589), Expect = 2.5e-57
Identity = 124/159 (77.99%), Postives = 139/159 (87.42%), Query Frame = 0


Query: 1   AAVECSNRSRSEDDEKNCNNQRELGNEGSSSNSTIEENNTHDHNQKNKPSVRPYVRSKLP 60
           AA ECSN+SRS+ ++    +Q ELGNEGSSSNSTIEEN   D  QK KP+VRPYVRSKLP
Sbjct: 19  AAAECSNKSRSDSNK----SQSELGNEGSSSNSTIEEN---DERQK-KPTVRPYVRSKLP 78

Query: 61  RLRWTPDLHHRFVHAVERLGGQENATPKLVLQLMNIKGLNIAHVKSHLQMYRSKKINEHG 120
           RLRWTPDLH RF+HAV+ LGGQ+NATPKLVLQLMNIKGL+IAHVKSHLQMYRSKK NE  
Sbjct: 79  RLRWTPDLHFRFLHAVQSLGGQQNATPKLVLQLMNIKGLSIAHVKSHLQMYRSKKSNEMT 138

Query: 121 QVADQRLVMAETGDRNIFTVSQIPMFQRYNQTYPSNIFR 160
            VADQR++M++T DRNIFTVSQIPMFQR+NQTYPSNIFR
Sbjct: 139 TVADQRVLMSQTSDRNIFTVSQIPMFQRHNQTYPSNIFR 169

[Close]

BLAST of MS013911 vs. ExPASy TrEMBL
Match: A0A6J1HPW1 (putative Myb family transcription factor At1g14600 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111466265 PE=4 SV=1)

HSP 1 Score: 228.0 bits (580), Expect = 2.7e-56
Identity = 120/159 (75.47%), Postives = 137/159 (86.16%), Query Frame = 0


Query: 1   AAVECSNRSRSEDDEKNCNNQRELGNEGSSSNSTIEENNTHDHNQKNKPSVRPYVRSKLP 60
           AA  CSN+SRS+ ++    +Q ELGNEGSSSNSTIEEN+     Q+ KP+VRPYVRSKLP
Sbjct: 52  AAAACSNKSRSDSNK----SQSELGNEGSSSNSTIEEND----EQQKKPTVRPYVRSKLP 111

Query: 61  RLRWTPDLHHRFVHAVERLGGQENATPKLVLQLMNIKGLNIAHVKSHLQMYRSKKINEHG 120
           RLRWTPDLH RF+HAV+ LGGQ+NATPKLVLQLMNIKGL+IAHVKSHLQMYRSKK NE  
Sbjct: 112 RLRWTPDLHFRFLHAVQSLGGQQNATPKLVLQLMNIKGLSIAHVKSHLQMYRSKKTNEMT 171

Query: 121 QVADQRLVMAETGDRNIFTVSQIPMFQRYNQTYPSNIFR 160
            VADQR++M++T D NIFTVSQIPMFQR+NQTYPSNIFR
Sbjct: 172 TVADQRVLMSQTSDHNIFTVSQIPMFQRHNQTYPSNIFR 202

[Close]

BLAST of MS013911 vs. ExPASy TrEMBL
Match: A0A6J1HNJ5 (putative Myb family transcription factor At1g14600 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111466265 PE=4 SV=1)

HSP 1 Score: 228.0 bits (580), Expect = 2.7e-56
Identity = 120/159 (75.47%), Postives = 137/159 (86.16%), Query Frame = 0


Query: 1   AAVECSNRSRSEDDEKNCNNQRELGNEGSSSNSTIEENNTHDHNQKNKPSVRPYVRSKLP 60
           AA  CSN+SRS+ ++    +Q ELGNEGSSSNSTIEEN+     Q+ KP+VRPYVRSKLP
Sbjct: 12  AAAACSNKSRSDSNK----SQSELGNEGSSSNSTIEEND----EQQKKPTVRPYVRSKLP 71

Query: 61  RLRWTPDLHHRFVHAVERLGGQENATPKLVLQLMNIKGLNIAHVKSHLQMYRSKKINEHG 120
           RLRWTPDLH RF+HAV+ LGGQ+NATPKLVLQLMNIKGL+IAHVKSHLQMYRSKK NE  
Sbjct: 72  RLRWTPDLHFRFLHAVQSLGGQQNATPKLVLQLMNIKGLSIAHVKSHLQMYRSKKTNEMT 131

Query: 121 QVADQRLVMAETGDRNIFTVSQIPMFQRYNQTYPSNIFR 160
            VADQR++M++T D NIFTVSQIPMFQR+NQTYPSNIFR
Sbjct: 132 TVADQRVLMSQTSDHNIFTVSQIPMFQRHNQTYPSNIFR 162

[Close]

BLAST of MS013911 vs. ExPASy TrEMBL
Match: A0A1S3CL07 (probable transcription factor KAN4 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103502151 PE=4 SV=1)

HSP 1 Score: 226.9 bits (577), Expect = 6.1e-56
Identity = 125/166 (75.30%), Postives = 138/166 (83.13%), Query Frame = 0


Query: 4   ECSNRSRSEDDEKN------CNNQRELGNEGSSSNSTIEENNTHDHNQ-KNK-PSVRPYV 63
           ECSN   S+ D+ N       ++  E GNEGSSSNSTIEENN +DH+Q K K P+VRPYV
Sbjct: 6   ECSNTRSSDTDDNNNKKSESSSSSTEFGNEGSSSNSTIEENNNNDHDQHKTKPPTVRPYV 65

Query: 64  RSKLPRLRWTPDLHHRFVHAVERLGGQENATPKLVLQLMNIKGLNIAHVKSHLQMYRSKK 123
           RSKLPRLRWTPDLH RFVHAVERLGGQENATPKLVLQLMNIKGL+IAHVKSHLQMYRSKK
Sbjct: 66  RSKLPRLRWTPDLHLRFVHAVERLGGQENATPKLVLQLMNIKGLSIAHVKSHLQMYRSKK 125

Query: 124 INEHGQVADQRLVMAET--GDRNIFTVSQIPMFQRYNQTYPSNIFR 160
            NE GQV DQR++MAE+  GDRNIF VSQIPMFQRYN +Y SN+FR
Sbjct: 126 TNEPGQVGDQRVLMAESNNGDRNIFNVSQIPMFQRYNSSYTSNLFR 171

[Close]

BLAST of MS013911 vs. TAIR 10
Match: AT2G38300.1 (myb-like HTH transcriptional regulator family protein )

HSP 1 Score: 157.5 bits (397), Expect = 8.7e-39
Identity = 89/152 (58.55%), Postives = 111/152 (73.03%), Query Frame = 0


Query: 6   SNRSRSEDDEKNCNNQRELGNEGS-SSNSTIEENNTHDHNQKNKPSVRPYVRSKLPRLRW 65
           +NR   E++E+    + E G E   SSNST+EE++        K  VRPYVRSK+PRLRW
Sbjct: 11  TNREEEEEEEE----EEEEGEESKVSSNSTVEESD-------KKTKVRPYVRSKVPRLRW 70

Query: 66  TPDLHHRFVHAVERLGGQENATPKLVLQLMNIKGLNIAHVKSHLQMYRSKKINEHGQ-VA 125
           TPDLH RFV AVERLGGQE ATPKLV Q+MNIKGL+IAHVKSHLQMYRSKKI++ GQ +A
Sbjct: 71  TPDLHLRFVRAVERLGGQERATPKLVRQMMNIKGLSIAHVKSHLQMYRSKKIDDQGQAIA 130

Query: 126 DQRLVMAETGDRNIFTVSQIPMFQRYNQTYPS 156
             + +   + DRNI+ +SQ+PMF+ YN  + S
Sbjct: 131 GHKHLFETSTDRNIYKLSQLPMFRGYNHNHDS 151

[Close]

BLAST of MS013911 vs. TAIR 10
Match: AT2G40260.1 (Homeodomain-like superfamily protein )

HSP 1 Score: 136.7 bits (343), Expect = 1.6e-32
Identity = 80/153 (52.29%), Postives = 105/153 (68.63%), Query Frame = 0


Query: 7   NRSRSEDDEKNCNNQRELGNEGSSSNSTIEENNTHDH--NQKNKPSVRPYVRSKLPRLRW 66
           ++   +D+E   + +   G++  SSNS  EE+ +H H  N+KN  SVRPY RSK PRLRW
Sbjct: 28  DKDEEDDEEGEEDEEERSGDQSPSSNSYEEESGSHHHDQNKKNGGSVRPYNRSKTPRLRW 87

Query: 67  TPDLHHRFVHAVERLGGQENATPKLVLQLMNIKGLNIAHVKSHLQMYRSKKINEHGQVAD 126
           TP+LH  F+ AVERLGG + ATPKLVLQLMN+KGL+IAHVKSHLQMYRSKK +E  +  D
Sbjct: 88  TPELHICFLQAVERLGGPDRATPKLVLQLMNVKGLSIAHVKSHLQMYRSKKTDEPNE-GD 147

Query: 127 QRLVMAETGDRNIFTVSQIPMFQRYNQTYPSNI 158
           Q     E G    + +SQ+PM Q ++Q   S++
Sbjct: 148 QGFSF-EHGAGYTYNLSQLPMLQSFDQRPSSSL 178

[Close]

BLAST of MS013911 vs. TAIR 10
Match: AT2G42660.1 (Homeodomain-like superfamily protein )

HSP 1 Score: 110.5 bits (275), Expect = 1.2e-24
Identity = 57/99 (57.58%), Postives = 74/99 (74.75%), Query Frame = 0


Query: 18  CNNQRELGNEGSSSNSTIEENNTHDHNQKNKPSVRPYVRSKLPRLRWTPDLHHRFVHAVE 77
           C+   +L  E +   +  EE++  D +Q    +VR Y+RS +PRLRWTPDLH  FV AV+
Sbjct: 10  CSTWLDLNREETVEKNNEEESSVEDEDQITN-NVRQYIRSNMPRLRWTPDLHLSFVRAVQ 69

Query: 78  RLGGQENATPKLVLQLMNIKGLNIAHVKSHLQMYRSKKI 117
           RLGG + ATPKLVL++MN+KGL+IAHVKSHLQMYRSKK+
Sbjct: 70  RLGGPDRATPKLVLEMMNLKGLSIAHVKSHLQMYRSKKL 107

[Close]

BLAST of MS013911 vs. TAIR 10
Match: AT1G14600.1 (Homeodomain-like superfamily protein )

HSP 1 Score: 106.7 bits (265), Expect = 1.8e-23
Identity = 49/71 (69.01%), Postives = 59/71 (83.10%), Query Frame = 0


Query: 51  VRPYVRSKLPRLRWTPDLHHRFVHAVERLGGQENATPKLVLQLMNIKGLNIAHVKSHLQM 110
           VRPYVRS +PRLRWTP+LH  FVHAV+ LGGQ  ATPKLVL++M++KGL I+HVKSHLQM
Sbjct: 15  VRPYVRSPVPRLRWTPELHRSFVHAVDLLGGQYKATPKLVLKIMDVKGLTISHVKSHLQM 74

Query: 111 YRSKKINEHGQ 122
           YR  +I   G+
Sbjct: 75  YRGSRITLLGK 85

[Close]

BLAST of MS013911 vs. TAIR 10
Match: AT2G02060.1 (Homeodomain-like superfamily protein )

HSP 1 Score: 103.6 bits (257), Expect = 1.5e-22
Identity = 53/87 (60.92%), Postives = 62/87 (71.26%), Query Frame = 0


Query: 26  NEGSSSNSTIEENNTHDHNQKNKPSVRPYVRSKLPRLRWTPDLHHRFVHAVERLGGQENA 85
           + G + N +   N  H         VRPYVRS +PRLRWTPDLH  FVHAVE LGGQ  A
Sbjct: 4   SSGRNGNGSFNGNKFH--------GVRPYVRSPVPRLRWTPDLHRCFVHAVEILGGQHRA 63

Query: 86  TPKLVLQLMNIKGLNIAHVKSHLQMYR 113
           TPKLVL++M++KGL I+HVKSHLQMYR
Sbjct: 64  TPKLVLKMMDVKGLTISHVKSHLQMYR 82

The following BLAST results are available for this feature:

BLAST of MS013911 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022144064.1	1.2e-82	100.00	uncharacterized protein LOC111013845 [Momordica charantia]	[more]
KAG7027421.1	5.1e-57	77.99	putative Myb family transcription factor, partial [Cucurbita argyrosperma subsp....	[more]
KAG6595411.1	5.1e-57	77.99	putative Myb family transcription factor, partial [Cucurbita argyrosperma subsp....	[more]
XP_022931927.1	5.1e-57	77.99	putative Myb family transcription factor At1g14600 [Cucurbita moschata]	[more]
XP_023518589.1	5.1e-57	77.99	putative Myb family transcription factor At1g14600 [Cucurbita pepo subsp. pepo]	[more]

BLAST of MS013911 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q700D9	2.5e-22	69.01	Putative Myb family transcription factor At1g14600 OS=Arabidopsis thaliana OX=37...	[more]
A3AWH5	5.5e-22	66.20	Myb family transcription factor MOF1 OS=Oryza sativa subsp. japonica OX=39947 GN...	[more]
A0A0P0X0C0	3.0e-20	57.50	Myb family transcription factor MPH1 OS=Oryza sativa subsp. japonica OX=39947 GN...	[more]
Q9C616	3.7e-18	46.09	Probable transcription factor KAN2 OS=Arabidopsis thaliana OX=3702 GN=KAN2 PE=2 ...	[more]
Q93WJ9	1.2e-16	49.00	Transcription repressor KAN1 OS=Arabidopsis thaliana OX=3702 GN=KAN1 PE=1 SV=1	[more]

BLAST of MS013911 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CR72	5.8e-83	100.00	uncharacterized protein LOC111013845 OS=Momordica charantia OX=3673 GN=LOC111013...	[more]
A0A6J1EV69	2.5e-57	77.99	putative Myb family transcription factor At1g14600 OS=Cucurbita moschata OX=3662...	[more]
A0A6J1HPW1	2.7e-56	75.47	putative Myb family transcription factor At1g14600 isoform X1 OS=Cucurbita maxim...	[more]
A0A6J1HNJ5	2.7e-56	75.47	putative Myb family transcription factor At1g14600 isoform X2 OS=Cucurbita maxim...	[more]
A0A1S3CL07	6.1e-56	75.30	probable transcription factor KAN4 isoform X2 OS=Cucumis melo OX=3656 GN=LOC1035...	[more]

BLAST of MS013911 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G38300.1	8.7e-39	58.55	myb-like HTH transcriptional regulator family protein	[more]
AT2G40260.1	1.6e-32	52.29	Homeodomain-like superfamily protein	[more]
AT2G42660.1	1.2e-24	57.58	Homeodomain-like superfamily protein	[more]
AT1G14600.1	1.8e-23	69.01	Homeodomain-like superfamily protein	[more]
AT2G02060.1	1.5e-22	60.92	Homeodomain-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006447	Myb domain, plants	TIGRFAM	TIGR01557	TIGR01557	coord: 60..115 e-value: 1.0E-22 score: 78.2
None	No IPR available	GENE3D	1.10.10.60		coord: 59..117 e-value: 1.8E-27 score: 97.2
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 22..38
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..55
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 7..21
None	No IPR available	PANTHER	PTHR31314:SF2	MYB-LIKE HTH TRANSCRIPTIONAL REGULATOR FAMILY PROTEIN	coord: 7..155
IPR017930	Myb domain	PFAM	PF00249	Myb_DNA-binding	coord: 62..112 e-value: 1.7E-7 score: 31.3
IPR017930	Myb domain	PROSITE	PS51294	HTH_MYB	coord: 56..116 score: 13.494752
IPR044848	PHR1-like	PANTHER	PTHR31314	MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE	coord: 7..155
IPR009057	Homeobox-like domain superfamily	SUPERFAMILY	46689	Homeodomain-like	coord: 58..114

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS013911.1	MS013911.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003700	DNA-binding transcription factor activity