MS013909 (gene) Bitter gourd (TR) v1

Overview


Name	MS013909
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	kinetochore protein SPC24 homolog
Location	scaffold607: 779974 .. 780453 (-)
RNA-Seq Expression	MS013909
Synteny	MS013909

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGAGATTTCTCAGGAAAGATCAACATTGAGGAGTTGTTATCCTATGGCAATGATCTGATTGCACTCTTGAAGGACCAAAAGGACGTCCAAACCTTGAATCAATGTCTCGAACATGTCAAGGCTCTTCAATCTTTTTGCGATGATGATTTCAGTAATGTTCACAGTTCAGTTCAAGGTCTCTCTCTCTCGTTGTATAATTTCGAAAGTACAGTTGAGCTATGTTTAGGAAAGCGAAGGACAATCTTTAGTGTGAAAATTTGTAATCATTTTGCGGTTAGCAATTTTGGCAATTAATTTCATATAATTTGTTTTAACGAGTTACTAAACGAAGCAGATTATGAGAAGAAAATCGAGGCATGCCGGCAGAAAACGGAGGAGGCGAAAGCGAGAACTGTTGCAGATGCTGAAATGGATGTTCTCGAAGAGGAGCTCGAAGAGGAACTTAGGAAAGAACATTTGCTCATGGAGGAGATTAGA

mRNA sequence

ATGGGAGATTTCTCAGGAAAGATCAACATTGAGGAGTTGTTATCCTATGGCAATGATCTGATTGCACTCTTGAAGGACCAAAAGGACGTCCAAACCTTGAATCAATGTCTCGAACATGTCAAGGCTCTTCAATCTTTTTGCGATGATGATTTCAGTAATGTTCACAGTTCAGTTCAAGCAGATTATGAGAAGAAAATCGAGGCATGCCGGCAGAAAACGGAGGAGGCGAAAGCGAGAACTGTTGCAGATGCTGAAATGGATGTTCTCGAAGAGGAGCTCGAAGAGGAACTTAGGAAAGAACATTTGCTCATGGAGGAGATTAGA

Coding sequence (CDS)

ATGGGAGATTTCTCAGGAAAGATCAACATTGAGGAGTTGTTATCCTATGGCAATGATCTGATTGCACTCTTGAAGGACCAAAAGGACGTCCAAACCTTGAATCAATGTCTCGAACATGTCAAGGCTCTTCAATCTTTTTGCGATGATGATTTCAGTAATGTTCACAGTTCAGTTCAAGCAGATTATGAGAAGAAAATCGAGGCATGCCGGCAGAAAACGGAGGAGGCGAAAGCGAGAACTGTTGCAGATGCTGAAATGGATGTTCTCGAAGAGGAGCTCGAAGAGGAACTTAGGAAAGAACATTTGCTCATGGAGGAGATTAGA

Protein sequence

MGDFSGKINIEELLSYGNDLIALLKDQKDVQTLNQCLEHVKALQSFCDDDFSNVHSSVQADYEKKIEACRQKTEEAKARTVADAEMDVLEEELEEELRKEHLLMEEIR

Homology

[Close]

BLAST of MS013909 vs. NCBI nr
Match: XP_022144074.1 (uncharacterized protein LOC111013852 isoform X1 [Momordica charantia])

HSP 1 Score: 199.5 bits (506), Expect = 1.5e-47
Identity = 106/108 (98.15%), Postives = 107/108 (99.07%), Query Frame = 0


Query: 1   MGDFSGKINIEELLSYGNDLIALLKDQKDVQTLNQCLEHVKALQSFCDDDFSNVHSSVQA 60
           MGDFSGKINIEELLSYGNDL+ALLKDQKDVQTLNQCLEHVKALQSFCDDDFSNVHSSVQ 
Sbjct: 1   MGDFSGKINIEELLSYGNDLVALLKDQKDVQTLNQCLEHVKALQSFCDDDFSNVHSSVQ- 60

Query: 61  DYEKKIEACRQKTEEAKARTVADAEMDVLEEELEEELRKEHLLMEEIR 109
           DYEKKIEACRQKTEEAKARTVADAEMDVLEEELEEELRKEHLLMEEIR
Sbjct: 61  DYEKKIEACRQKTEEAKARTVADAEMDVLEEELEEELRKEHLLMEEIR 107

[Close]

BLAST of MS013909 vs. NCBI nr
Match: XP_022144075.1 (uncharacterized protein LOC111013852 isoform X2 [Momordica charantia])

HSP 1 Score: 189.5 bits (480), Expect = 1.5e-44
Identity = 101/108 (93.52%), Postives = 103/108 (95.37%), Query Frame = 0


Query: 1   MGDFSGKINIEELLSYGNDLIALLKDQKDVQTLNQCLEHVKALQSFCDDDFSNVHSSVQA 60
           MGDFSGKINIEELLSYGNDL+ALLKDQKDVQTLNQCLEHVKALQSFCDDDFSNVH     
Sbjct: 1   MGDFSGKINIEELLSYGNDLVALLKDQKDVQTLNQCLEHVKALQSFCDDDFSNVH----- 60

Query: 61  DYEKKIEACRQKTEEAKARTVADAEMDVLEEELEEELRKEHLLMEEIR 109
           +YEKKIEACRQKTEEAKARTVADAEMDVLEEELEEELRKEHLLMEEIR
Sbjct: 61  NYEKKIEACRQKTEEAKARTVADAEMDVLEEELEEELRKEHLLMEEIR 103

[Close]

BLAST of MS013909 vs. NCBI nr
Match: XP_022966574.1 (uncharacterized protein LOC111466216 [Cucurbita maxima])

HSP 1 Score: 164.9 bits (416), Expect = 4.0e-37
Identity = 87/108 (80.56%), Postives = 95/108 (87.96%), Query Frame = 0


Query: 1   MGDFSGKINIEELLSYGNDLIALLKDQKDVQTLNQCLEHVKALQSFCDDDFSNVHSSVQA 60
           MGDFSGK+NIEELLSYGNDL+ LLKDQ DVQTLNQCL+H  ALQS C DDFSNVH  +  
Sbjct: 1   MGDFSGKMNIEELLSYGNDLVVLLKDQNDVQTLNQCLQHFNALQSSCHDDFSNVH--LVQ 60

Query: 61  DYEKKIEACRQKTEEAKARTVADAEMDVLEEELEEELRKEHLLMEEIR 109
           DYEKKIE CR KTEEAKARTVAD EMD+LE+E+EEELR+EHLLMEEIR
Sbjct: 61  DYEKKIEECRVKTEEAKARTVADDEMDILEKEVEEELREEHLLMEEIR 106

[Close]

BLAST of MS013909 vs. NCBI nr
Match: XP_023518318.1 (uncharacterized protein LOC111781837 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 162.2 bits (409), Expect = 2.6e-36
Identity = 86/108 (79.63%), Postives = 96/108 (88.89%), Query Frame = 0


Query: 1   MGDFSGKINIEELLSYGNDLIALLKDQKDVQTLNQCLEHVKALQSFCDDDFSNVHSSVQA 60
           MGDFSGK+NIE+LLSYG+DL+ALLKDQ DVQTLNQCL+   ALQS C DD  NVHSSVQ 
Sbjct: 1   MGDFSGKMNIEDLLSYGDDLVALLKDQNDVQTLNQCLQQFNALQSSCHDDSRNVHSSVQ- 60

Query: 61  DYEKKIEACRQKTEEAKARTVADAEMDVLEEELEEELRKEHLLMEEIR 109
           DYEKKIE CR KTEEAKARTVAD EMD+LE+E+EEE+R+EHLLMEEIR
Sbjct: 61  DYEKKIEECRVKTEEAKARTVADDEMDILEKEIEEEVREEHLLMEEIR 107

[Close]

BLAST of MS013909 vs. NCBI nr
Match: XP_022931907.1 (uncharacterized protein LOC111438184 [Cucurbita moschata] >XP_022931908.1 uncharacterized protein LOC111438184 [Cucurbita moschata])

HSP 1 Score: 161.4 bits (407), Expect = 4.4e-36
Identity = 86/108 (79.63%), Postives = 96/108 (88.89%), Query Frame = 0


Query: 1   MGDFSGKINIEELLSYGNDLIALLKDQKDVQTLNQCLEHVKALQSFCDDDFSNVHSSVQA 60
           MGDFSGK+NIE+LLSYG+DL+ALLKDQ DVQTLNQCL+H  ALQS   DD  NVHSSVQ 
Sbjct: 1   MGDFSGKMNIEDLLSYGDDLVALLKDQNDVQTLNQCLQHFNALQSSSHDDSRNVHSSVQ- 60

Query: 61  DYEKKIEACRQKTEEAKARTVADAEMDVLEEELEEELRKEHLLMEEIR 109
           DYEKKIE CR KTEEAKARTVAD EMD+LE+E+EEE+R+EHLLMEEIR
Sbjct: 61  DYEKKIEECRVKTEEAKARTVADDEMDILEKEIEEEVREEHLLMEEIR 107

[Close]

BLAST of MS013909 vs. ExPASy Swiss-Prot
Match: Q67XT3 (Kinetochore protein SPC24 homolog OS=Arabidopsis thaliana OX=3702 GN=SPC24 PE=1 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 3.2e-13
Identity = 43/108 (39.81%), Postives = 71/108 (65.74%), Query Frame = 0


Query: 1   MGDFSGKINIEELLSYGNDLIALLKDQKDVQTLNQCLEHVKALQSFCDDDFSNVHSSVQA 60
           MG+ S   +IE+L+SYG+DLI LL  +     ++Q  E  KAL   C +DF+ +  S++ 
Sbjct: 1   MGNASENFDIEDLMSYGDDLINLLNVKNGFDIISQSSEQFKALNFACHEDFNQIQGSIE- 60

Query: 61  DYEKKIEACRQKTEEAKARTVADAEMDVLEEELEEELRKEHLLMEEIR 109
           D + K+ AC++KTEEA +   A+ E++ L++EL+EE+ +E  L +E+R
Sbjct: 61  DCKTKLYACKKKTEEAYSDIAAEDEIERLQKELDEEMEREFKLKDELR 107

[Close]

BLAST of MS013909 vs. ExPASy TrEMBL
Match: A0A6J1CR83 (uncharacterized protein LOC111013852 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111013852 PE=4 SV=1)

HSP 1 Score: 199.5 bits (506), Expect = 7.1e-48
Identity = 106/108 (98.15%), Postives = 107/108 (99.07%), Query Frame = 0


Query: 1   MGDFSGKINIEELLSYGNDLIALLKDQKDVQTLNQCLEHVKALQSFCDDDFSNVHSSVQA 60
           MGDFSGKINIEELLSYGNDL+ALLKDQKDVQTLNQCLEHVKALQSFCDDDFSNVHSSVQ 
Sbjct: 1   MGDFSGKINIEELLSYGNDLVALLKDQKDVQTLNQCLEHVKALQSFCDDDFSNVHSSVQ- 60

Query: 61  DYEKKIEACRQKTEEAKARTVADAEMDVLEEELEEELRKEHLLMEEIR 109
           DYEKKIEACRQKTEEAKARTVADAEMDVLEEELEEELRKEHLLMEEIR
Sbjct: 61  DYEKKIEACRQKTEEAKARTVADAEMDVLEEELEEELRKEHLLMEEIR 107

[Close]

BLAST of MS013909 vs. ExPASy TrEMBL
Match: A0A6J1CQL9 (uncharacterized protein LOC111013852 isoform X2 OS=Momordica charantia OX=3673 GN=LOC111013852 PE=4 SV=1)

HSP 1 Score: 189.5 bits (480), Expect = 7.3e-45
Identity = 101/108 (93.52%), Postives = 103/108 (95.37%), Query Frame = 0


Query: 1   MGDFSGKINIEELLSYGNDLIALLKDQKDVQTLNQCLEHVKALQSFCDDDFSNVHSSVQA 60
           MGDFSGKINIEELLSYGNDL+ALLKDQKDVQTLNQCLEHVKALQSFCDDDFSNVH     
Sbjct: 1   MGDFSGKINIEELLSYGNDLVALLKDQKDVQTLNQCLEHVKALQSFCDDDFSNVH----- 60

Query: 61  DYEKKIEACRQKTEEAKARTVADAEMDVLEEELEEELRKEHLLMEEIR 109
           +YEKKIEACRQKTEEAKARTVADAEMDVLEEELEEELRKEHLLMEEIR
Sbjct: 61  NYEKKIEACRQKTEEAKARTVADAEMDVLEEELEEELRKEHLLMEEIR 103

[Close]

BLAST of MS013909 vs. ExPASy TrEMBL
Match: A0A6J1HU69 (uncharacterized protein LOC111466216 OS=Cucurbita maxima OX=3661 GN=LOC111466216 PE=4 SV=1)

HSP 1 Score: 164.9 bits (416), Expect = 1.9e-37
Identity = 87/108 (80.56%), Postives = 95/108 (87.96%), Query Frame = 0


Query: 1   MGDFSGKINIEELLSYGNDLIALLKDQKDVQTLNQCLEHVKALQSFCDDDFSNVHSSVQA 60
           MGDFSGK+NIEELLSYGNDL+ LLKDQ DVQTLNQCL+H  ALQS C DDFSNVH  +  
Sbjct: 1   MGDFSGKMNIEELLSYGNDLVVLLKDQNDVQTLNQCLQHFNALQSSCHDDFSNVH--LVQ 60

Query: 61  DYEKKIEACRQKTEEAKARTVADAEMDVLEEELEEELRKEHLLMEEIR 109
           DYEKKIE CR KTEEAKARTVAD EMD+LE+E+EEELR+EHLLMEEIR
Sbjct: 61  DYEKKIEECRVKTEEAKARTVADDEMDILEKEVEEELREEHLLMEEIR 106

[Close]

BLAST of MS013909 vs. ExPASy TrEMBL
Match: A0A6J1F034 (uncharacterized protein LOC111438184 OS=Cucurbita moschata OX=3662 GN=LOC111438184 PE=4 SV=1)

HSP 1 Score: 161.4 bits (407), Expect = 2.1e-36
Identity = 86/108 (79.63%), Postives = 96/108 (88.89%), Query Frame = 0


Query: 1   MGDFSGKINIEELLSYGNDLIALLKDQKDVQTLNQCLEHVKALQSFCDDDFSNVHSSVQA 60
           MGDFSGK+NIE+LLSYG+DL+ALLKDQ DVQTLNQCL+H  ALQS   DD  NVHSSVQ 
Sbjct: 1   MGDFSGKMNIEDLLSYGDDLVALLKDQNDVQTLNQCLQHFNALQSSSHDDSRNVHSSVQ- 60

Query: 61  DYEKKIEACRQKTEEAKARTVADAEMDVLEEELEEELRKEHLLMEEIR 109
           DYEKKIE CR KTEEAKARTVAD EMD+LE+E+EEE+R+EHLLMEEIR
Sbjct: 61  DYEKKIEECRVKTEEAKARTVADDEMDILEKEIEEEVREEHLLMEEIR 107

[Close]

BLAST of MS013909 vs. ExPASy TrEMBL
Match: A0A6J1IPN8 (uncharacterized protein LOC111478320 OS=Cucurbita maxima OX=3661 GN=LOC111478320 PE=4 SV=1)

HSP 1 Score: 156.0 bits (393), Expect = 9.0e-35
Identity = 85/108 (78.70%), Postives = 93/108 (86.11%), Query Frame = 0


Query: 1   MGDFSGKINIEELLSYGNDLIALLKDQKDVQTLNQCLEHVKALQSFCDDDFSNVHSSVQA 60
           M DF+GK NIEE+LSYG+DL+ALL DQ DVQTLNQCLEH K LQS C DDFSNV SSVQ 
Sbjct: 1   MADFAGKFNIEEILSYGDDLVALLNDQNDVQTLNQCLEHFKTLQSSCFDDFSNVQSSVQ- 60

Query: 61  DYEKKIEACRQKTEEAKARTVADAEMDVLEEELEEELRKEHLLMEEIR 109
           DYEKKIEACRQKTEEAKA TVAD E+D+LE+EL EEL K +LLMEEIR
Sbjct: 61  DYEKKIEACRQKTEEAKASTVADDEIDILEKELGEELGKGNLLMEEIR 107

[Close]

BLAST of MS013909 vs. TAIR 10
Match: AT5G01570.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G08880.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )

HSP 1 Score: 76.6 bits (187), Expect = 1.3e-14
Identity = 41/100 (41.00%), Postives = 68/100 (68.00%), Query Frame = 0


Query: 9   NIEELLSYGNDLIALLKDQKDVQTLNQCLEHVKALQSFCDDDFSNVHSSVQADYEKKIEA 68
           N E ++S+G++LI +L D+K    L Q LE ++A+   CD+DF  +H S+Q D +KK++ 
Sbjct: 7   NFEMVISWGDELIHVLDDRKGFDVLVQTLEQLRAIPFSCDEDFKEIHESLQ-DLQKKLDV 66

Query: 69  CRQKTEEAKARTVADAEMDVLEEELEEELRKEHLLMEEIR 109
           C++KT+EA +    + E++ L++EL+EEL  E  L EE+R
Sbjct: 67  CKEKTDEANSEIADEEEIERLQKELDEELELECKLKEELR 105

[Close]

BLAST of MS013909 vs. TAIR 10
Match: AT3G08880.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G01570.1); Has 177 Blast hits to 175 proteins in 60 species: Archae - 4; Bacteria - 33; Metazoa - 18; Fungi - 11; Plants - 59; Viruses - 0; Other Eukaryotes - 52 (source: NCBI BLink). )

HSP 1 Score: 75.9 bits (185), Expect = 2.3e-14
Identity = 43/108 (39.81%), Postives = 71/108 (65.74%), Query Frame = 0


Query: 1   MGDFSGKINIEELLSYGNDLIALLKDQKDVQTLNQCLEHVKALQSFCDDDFSNVHSSVQA 60
           MG+ S   +IE+L+SYG+DLI LL  +     ++Q  E  KAL   C +DF+ +  S++ 
Sbjct: 1   MGNASENFDIEDLMSYGDDLINLLNVKNGFDIISQSSEQFKALNFACHEDFNQIQGSIE- 60

Query: 61  DYEKKIEACRQKTEEAKARTVADAEMDVLEEELEEELRKEHLLMEEIR 109
           D + K+ AC++KTEEA +   A+ E++ L++EL+EE+ +E  L +E+R
Sbjct: 61  DCKTKLYACKKKTEEAYSDIAAEDEIERLQKELDEEMEREFKLKDELR 107

The following BLAST results are available for this feature:

BLAST of MS013909 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022144074.1	1.5e-47	98.15	uncharacterized protein LOC111013852 isoform X1 [Momordica charantia]	[more]
XP_022144075.1	1.5e-44	93.52	uncharacterized protein LOC111013852 isoform X2 [Momordica charantia]	[more]
XP_022966574.1	4.0e-37	80.56	uncharacterized protein LOC111466216 [Cucurbita maxima]	[more]
XP_023518318.1	2.6e-36	79.63	uncharacterized protein LOC111781837 [Cucurbita pepo subsp. pepo]	[more]
XP_022931907.1	4.4e-36	79.63	uncharacterized protein LOC111438184 [Cucurbita moschata] >XP_022931908.1 unchar...	[more]

BLAST of MS013909 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q67XT3	3.2e-13	39.81	Kinetochore protein SPC24 homolog OS=Arabidopsis thaliana OX=3702 GN=SPC24 PE=1 ...	[more]

BLAST of MS013909 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CR83	7.1e-48	98.15	uncharacterized protein LOC111013852 isoform X1 OS=Momordica charantia OX=3673 G...	[more]
A0A6J1CQL9	7.3e-45	93.52	uncharacterized protein LOC111013852 isoform X2 OS=Momordica charantia OX=3673 G...	[more]
A0A6J1HU69	1.9e-37	80.56	uncharacterized protein LOC111466216 OS=Cucurbita maxima OX=3661 GN=LOC111466216...	[more]
A0A6J1F034	2.1e-36	79.63	uncharacterized protein LOC111438184 OS=Cucurbita moschata OX=3662 GN=LOC1114381...	[more]
A0A6J1IPN8	9.0e-35	78.70	uncharacterized protein LOC111478320 OS=Cucurbita maxima OX=3661 GN=LOC111478320...	[more]

BLAST of MS013909 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G01570.1	1.3e-14	41.00	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT3G08880.1	2.3e-14	39.81	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 59..106
None	No IPR available	PANTHER	PTHR35730:SF2	KINETOCHORE PROTEIN SPC24 HOMOLOG-RELATED	coord: 1..108
IPR044951	Kinetochore protein SPC24-like	PANTHER	PTHR35730	KINETOCHORE PROTEIN SPC24 HOMOLOG-RELATED	coord: 1..108

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS013909.1	MS013909.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0051983	regulation of chromosome segregation