MS013876 (gene) Bitter gourd (TR) v1

Overview


Name	MS013876
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Unknown protein
Location	scaffold607: 514126 .. 514449 (-)
RNA-Seq Expression	MS013876
Synteny	MS013876

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

TTGTCGTCGTCGATGCTCCAAATGAACAGACATTATTCTCCGACTCCGATCCCGATCCCGATTCAGAACCTACGAAGATCGTCAATCCCTCCGCCGCCGCCGGCGCCGCCGCTAATCATCCTGCGGATTCCGAAACACATAACCGAACCGGTGGCCGCCGCTTCCTCTTCCTCCTCCGAACACCGCCGCGCCGCCGTACGGCGCCCGGTGGCGAACTTCACTCTGGCAGGCGAGTCGATCGCCGATCCGGAAGACGGCAATGTCGCGGATCTGGAAAACGGCGGCGCCAACAGATCGAATTTCCGCTTGGGATTGAAGAAGATG

mRNA sequence

TTGTCGTCGTCGATGCTCCAAATGAACAGACATTATTCTCCGACTCCGATCCCGATCCCGATTCAGAACCTACGAAGATCGTCAATCCCTCCGCCGCCGCCGGCGCCGCCGCTAATCATCCTGCGGATTCCGAAACACATAACCGAACCGGTGGCCGCCGCTTCCTCTTCCTCCTCCGAACACCGCCGCGCCGCCGTACGGCGCCCGGTGGCGAACTTCACTCTGGCAGGCGAGTCGATCGCCGATCCGGAAGACGGCAATGTCGCGGATCTGGAAAACGGCGGCGCCAACAGATCGAATTTCCGCTTGGGATTGAAGAAGATG

Coding sequence (CDS)

TTGTCGTCGTCGATGCTCCAAATGAACAGACATTATTCTCCGACTCCGATCCCGATCCCGATTCAGAACCTACGAAGATCGTCAATCCCTCCGCCGCCGCCGGCGCCGCCGCTAATCATCCTGCGGATTCCGAAACACATAACCGAACCGGTGGCCGCCGCTTCCTCTTCCTCCTCCGAACACCGCCGCGCCGCCGTACGGCGCCCGGTGGCGAACTTCACTCTGGCAGGCGAGTCGATCGCCGATCCGGAAGACGGCAATGTCGCGGATCTGGAAAACGGCGGCGCCAACAGATCGAATTTCCGCTTGGGATTGAAGAAGATG

Protein sequence

LSSSMLQMNRHYSPTPIPIPIQNLRRSSIPPPPPAPPLIILRIPKHITEPVAAASSSSSEHRRAAVRRPVANFTLAGESIADPEDGNVADLENGGANRSNFRLGLKKM

Homology

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BLAST of MS013876 vs. ExPASy TrEMBL
Match: A0A0A0L2U4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G330070 PE=4 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 9.3e-08
Identity = 54/97 (55.67%), Postives = 57/97 (58.76%), Query Frame = 0


Query: 14  PTPIPIPIQNLRRSSIPPPPPAPPLIILRIPKHITEPVAAA-SSSSSEHRRAAVRRPVAN 73
           P PIPIPI    ++ IPP         L IPK  TE VAAA SSS S   R A RRPV N
Sbjct: 14  PIPIPIPIPIQIQNRIPPAH-------LPIPKQRTELVAAAFSSSFSVGNRRAERRPV-N 73

Query: 74  FTLAGESIADPEDGNVADLENGGAN-RSNFRLGLKKM 109
           F  A ES  DPED N  DLE GG + RSNF L LKKM
Sbjct: 74  FAPAAESNTDPEDDNEGDLETGGGDRRSNFLLELKKM 102

The following BLAST results are available for this feature:

BLAST of MS013876 vs.


Match Name	E-value	Identity	Description

BLAST of MS013876 vs.


Match Name	E-value	Identity	Description

BLAST of MS013876 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L2U4	9.3e-08	55.67	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G330070 PE=4 SV=1	[more]

BLAST of MS013876 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..36
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 81..108

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS013876.1	MS013876.1	mRNA