MS013875 (gene) Bitter gourd (TR) v1

Overview
NameMS013875
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionIBR domain containing protein
Locationscaffold607: 513833 .. 514330 (+)
RNA-Seq ExpressionMS013875
SyntenyMS013875
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
CTGCGAAATATGAGCTCCGATTATCCCCAAAAATCGCTCCAAATCAAGCAGAACGACAAATTCTTCTCCAAGCTTCTAAGCAGAGAAAGCTCCAGAGCCAATTCCTCTTCCAGATCGGTCTACTATGGCGGATTCGCCGGCGCCGTCCCCTTCGTTTGGGAATCTCAGCCAGGTACGCCCAAACACCGATTCTCCGACCACCTTACGCCTCCTCTCACTCCTCCTCCCTCTTTCTTCTCCGATTCCGCTAAAAAACCGCCCAAAAACCGCTCCAAATCCCTCAATCTCTTCCACATCTTCTTCAATCCCAAGCGGAAATTCGATCTGTTGGCGCCGCCGTTTTCCAGATCCGCGACATTGCCGTCTTCCGGATCGGCGATCGACTCGCCTGCCAGAGTGAAGTTCGCCACCGGGCGCCGTACGGCGGCGCGGCGGTGTTCGGAGGAGGAAGAGGAAGCGGCGGCCACCGGTTCGGTTATGTGTTTCGGAATCCGCAGG

mRNA sequence

CTGCGAAATATGAGCTCCGATTATCCCCAAAAATCGCTCCAAATCAAGCAGAACGACAAATTCTTCTCCAAGCTTCTAAGCAGAGAAAGCTCCAGAGCCAATTCCTCTTCCAGATCGGTCTACTATGGCGGATTCGCCGGCGCCGTCCCCTTCGTTTGGGAATCTCAGCCAGGTACGCCCAAACACCGATTCTCCGACCACCTTACGCCTCCTCTCACTCCTCCTCCCTCTTTCTTCTCCGATTCCGCTAAAAAACCGCCCAAAAACCGCTCCAAATCCCTCAATCTCTTCCACATCTTCTTCAATCCCAAGCGGAAATTCGATCTGTTGGCGCCGCCGTTTTCCAGATCCGCGACATTGCCGTCTTCCGGATCGGCGATCGACTCGCCTGCCAGAGTGAAGTTCGCCACCGGGCGCCGTACGGCGGCGCGGCGGTGTTCGGAGGAGGAAGAGGAAGCGGCGGCCACCGGTTCGGTTATGTGTTTCGGAATCCGCAGG

Coding sequence (CDS)

CTGCGAAATATGAGCTCCGATTATCCCCAAAAATCGCTCCAAATCAAGCAGAACGACAAATTCTTCTCCAAGCTTCTAAGCAGAGAAAGCTCCAGAGCCAATTCCTCTTCCAGATCGGTCTACTATGGCGGATTCGCCGGCGCCGTCCCCTTCGTTTGGGAATCTCAGCCAGGTACGCCCAAACACCGATTCTCCGACCACCTTACGCCTCCTCTCACTCCTCCTCCCTCTTTCTTCTCCGATTCCGCTAAAAAACCGCCCAAAAACCGCTCCAAATCCCTCAATCTCTTCCACATCTTCTTCAATCCCAAGCGGAAATTCGATCTGTTGGCGCCGCCGTTTTCCAGATCCGCGACATTGCCGTCTTCCGGATCGGCGATCGACTCGCCTGCCAGAGTGAAGTTCGCCACCGGGCGCCGTACGGCGGCGCGGCGGTGTTCGGAGGAGGAAGAGGAAGCGGCGGCCACCGGTTCGGTTATGTGTTTCGGAATCCGCAGG

Protein sequence

LRNMSSDYPQKSLQIKQNDKFFSKLLSRESSRANSSSRSVYYGGFAGAVPFVWESQPGTPKHRFSDHLTPPLTPPPSFFSDSAKKPPKNRSKSLNLFHIFFNPKRKFDLLAPPFSRSATLPSSGSAIDSPARVKFATGRRTAARRCSEEEEEAAATGSVMCFGIRR
Homology
BLAST of MS013875 vs. NCBI nr
Match: XP_022144087.1 (uncharacterized protein LOC111013865, partial [Momordica charantia])

HSP 1 Score: 263.1 bits (671), Expect = 1.7e-66
Identity = 132/133 (99.25%), Postives = 132/133 (99.25%), Query Frame = 0

Query: 4   MSSDYPQKSLQIKQNDKFFSKLLSRESSRANSSSRSVYYGGFAGAVPFVWESQPGTPKHR 63
           MSSDYPQKSLQIKQNDKFFSKLLSRESSRANSSSRSVYYGGFAGAVPF WESQPGTPKHR
Sbjct: 1   MSSDYPQKSLQIKQNDKFFSKLLSRESSRANSSSRSVYYGGFAGAVPFDWESQPGTPKHR 60

Query: 64  FSDHLTPPLTPPPSFFSDSAKKPPKNRSKSLNLFHIFFNPKRKFDLLAPPFSRSATLPSS 123
           FSDHLTPPLTPPPSFFSDSAKKPPKNRSKSLNLFHIFFNPKRKFDLLAPPFSRSATLPSS
Sbjct: 61  FSDHLTPPLTPPPSFFSDSAKKPPKNRSKSLNLFHIFFNPKRKFDLLAPPFSRSATLPSS 120

Query: 124 GSAIDSPARVKFA 137
           GSAIDSPARVKFA
Sbjct: 121 GSAIDSPARVKFA 133

BLAST of MS013875 vs. NCBI nr
Match: XP_008464261.1 (PREDICTED: uncharacterized protein LOC103502186 [Cucumis melo])

HSP 1 Score: 229.2 bits (583), Expect = 2.6e-56
Identity = 125/164 (76.22%), Postives = 139/164 (84.76%), Query Frame = 0

Query: 5   SSDYPQKSLQIKQNDKFFSKLLSRESSRANSSSRSVYYGGFAGAVPFVWESQPGTPKHRF 64
           +SDYPQKSLQ KQNDKFFSK+LSRESSRAN SSR +YYGG AGAVPFVWESQPGTP HRF
Sbjct: 5   TSDYPQKSLQFKQNDKFFSKILSRESSRANYSSR-IYYGGLAGAVPFVWESQPGTPIHRF 64

Query: 65  SDHLTPPLTPPPSFFSDSAKKPPKNRSKSLNLFHIFFNPKRKFDLLA-PPFSRSATLPSS 124
           SD LTPPLTPPPS+FSDS KKP K RSKSL+L HIFFN KRKFDLL+ PP S+SA+LPS 
Sbjct: 65  SDDLTPPLTPPPSYFSDSLKKPLKKRSKSLSLLHIFFNSKRKFDLLSPPPVSKSASLPSP 124

Query: 125 GSAIDSPARVKFATGRRTAARRCSEEEEE-AAATGSVMCFGIRR 167
           GS  DS A  KF TGRR+A R  +E+EEE AAA+GSV+CFG+ R
Sbjct: 125 GSVFDSAAGAKF-TGRRSARRFPTEKEEENAAASGSVLCFGLGR 166

BLAST of MS013875 vs. NCBI nr
Match: XP_038882810.1 (uncharacterized protein LOC120073955 [Benincasa hispida])

HSP 1 Score: 228.8 bits (582), Expect = 3.4e-56
Identity = 123/167 (73.65%), Postives = 136/167 (81.44%), Query Frame = 0

Query: 5   SSDYPQKSLQIKQNDKFFSKLLSRESSRANSSSRSVYYGGFAGAVPFVWESQPGTPKHRF 64
           +SDYPQKSLQ KQNDKFFSK+LSRESSRAN SSR +YYGG AGAVPFVWESQPGTP HRF
Sbjct: 5   TSDYPQKSLQFKQNDKFFSKILSRESSRANYSSR-IYYGGLAGAVPFVWESQPGTPIHRF 64

Query: 65  SDHLTPPLTPPPSFFSDSAKKPPKNRSKSLNLFHIFFNPKRKFDLLAPPFSRSATLPSSG 124
           SD LTP LTPPPS+FSDS KKP K RSKSL+L HI FN KRK DLL+PPFS+SA+LPSSG
Sbjct: 65  SDDLTPTLTPPPSYFSDSVKKPLKKRSKSLSLLHILFNSKRKIDLLSPPFSKSASLPSSG 124

Query: 125 SAIDSPARVKFATGRRTAAR-----RCSEEEEEAAATGSVMCFGIRR 167
           S  DS    KF TGRR+  R       S+EEE+AAATGS++CFGI R
Sbjct: 125 SEFDSAPGAKF-TGRRSGRRFPTGISRSKEEEDAAATGSILCFGISR 169

BLAST of MS013875 vs. NCBI nr
Match: KAG6603545.1 (hypothetical protein SDJN03_04154, partial [Cucurbita argyrosperma subsp. sororia] >KAG7033731.1 hypothetical protein SDJN02_03456, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 228.0 bits (580), Expect = 5.9e-56
Identity = 123/167 (73.65%), Postives = 136/167 (81.44%), Query Frame = 0

Query: 5   SSDYPQKSLQIKQNDKFFSKLLSRESSRANSSSRSVYYGGFAGAVPFVWESQPGTPKHRF 64
           +SDYP KSLQ K NDKFFSKLL+RESSRAN SSR +YYGG AGAVPFVWESQPGTP HRF
Sbjct: 5   TSDYPPKSLQFKHNDKFFSKLLTRESSRANHSSR-IYYGGLAGAVPFVWESQPGTPLHRF 64

Query: 65  SDHLTPPLTPPPSFFSDSAKKPPKNRSKSLNLFHIFFNPKRKFDLLAPPFSRSATLPSSG 124
           SD LTPPLTPPPS+FS S +KPPKNRSKSL+LFHIFFN KRK DLL PP S+SA+LPSSG
Sbjct: 65  SDDLTPPLTPPPSYFSHSLQKPPKNRSKSLSLFHIFFNHKRKLDLLTPPVSKSASLPSSG 124

Query: 125 SAIDSPARVKFATGRRTAAR-----RCSEEEEEAAATGSVMCFGIRR 167
           S  DS    KFA GRR+A R       S+E E+AAA+GSV+CFGI R
Sbjct: 125 SMFDSAVGAKFA-GRRSARRFVPGVSRSKEGEDAAASGSVLCFGIGR 169

BLAST of MS013875 vs. NCBI nr
Match: XP_011653717.1 (uncharacterized protein LOC105435254 [Cucumis sativus])

HSP 1 Score: 220.3 bits (560), Expect = 1.2e-53
Identity = 122/164 (74.39%), Postives = 136/164 (82.93%), Query Frame = 0

Query: 5   SSDYPQKSLQIKQNDKFFSKLLSRESSRANSSSRSVYYGGFAGAVPFVWESQPGTPKHRF 64
           +S+YPQKSLQ KQNDKF SK+LSRESSRAN SSR +YYGG AGAVPFVWESQPGTP HRF
Sbjct: 5   TSEYPQKSLQFKQNDKFISKILSRESSRANYSSR-IYYGGLAGAVPFVWESQPGTPIHRF 64

Query: 65  SDHLTPPLTPPPSFFSDSAKKPPKNRSKSLNLFHIFFNPKRKFDLLA-PPFSRSATLPSS 124
           SD LTPPLTPPPS+FSDS KKP K RSKSL+L HIFF+ KRKFDLL+ PP S+S +L SS
Sbjct: 65  SDDLTPPLTPPPSYFSDSLKKPLKKRSKSLSLLHIFFSSKRKFDLLSPPPVSKSPSLSSS 124

Query: 125 GSAIDSPARVKFATGRRTAARRCSEEEEE-AAATGSVMCFGIRR 167
           GS  DS A  KF TGRR+A R  +E+EEE AAAT SV+CFGI R
Sbjct: 125 GSVFDSAAGAKF-TGRRSARRFPTEKEEENAAATSSVLCFGIGR 166

BLAST of MS013875 vs. ExPASy TrEMBL
Match: A0A6J1CSP7 (uncharacterized protein LOC111013865 OS=Momordica charantia OX=3673 GN=LOC111013865 PE=4 SV=1)

HSP 1 Score: 263.1 bits (671), Expect = 8.0e-67
Identity = 132/133 (99.25%), Postives = 132/133 (99.25%), Query Frame = 0

Query: 4   MSSDYPQKSLQIKQNDKFFSKLLSRESSRANSSSRSVYYGGFAGAVPFVWESQPGTPKHR 63
           MSSDYPQKSLQIKQNDKFFSKLLSRESSRANSSSRSVYYGGFAGAVPF WESQPGTPKHR
Sbjct: 1   MSSDYPQKSLQIKQNDKFFSKLLSRESSRANSSSRSVYYGGFAGAVPFDWESQPGTPKHR 60

Query: 64  FSDHLTPPLTPPPSFFSDSAKKPPKNRSKSLNLFHIFFNPKRKFDLLAPPFSRSATLPSS 123
           FSDHLTPPLTPPPSFFSDSAKKPPKNRSKSLNLFHIFFNPKRKFDLLAPPFSRSATLPSS
Sbjct: 61  FSDHLTPPLTPPPSFFSDSAKKPPKNRSKSLNLFHIFFNPKRKFDLLAPPFSRSATLPSS 120

Query: 124 GSAIDSPARVKFA 137
           GSAIDSPARVKFA
Sbjct: 121 GSAIDSPARVKFA 133

BLAST of MS013875 vs. ExPASy TrEMBL
Match: A0A1S3CL26 (uncharacterized protein LOC103502186 OS=Cucumis melo OX=3656 GN=LOC103502186 PE=4 SV=1)

HSP 1 Score: 229.2 bits (583), Expect = 1.3e-56
Identity = 125/164 (76.22%), Postives = 139/164 (84.76%), Query Frame = 0

Query: 5   SSDYPQKSLQIKQNDKFFSKLLSRESSRANSSSRSVYYGGFAGAVPFVWESQPGTPKHRF 64
           +SDYPQKSLQ KQNDKFFSK+LSRESSRAN SSR +YYGG AGAVPFVWESQPGTP HRF
Sbjct: 5   TSDYPQKSLQFKQNDKFFSKILSRESSRANYSSR-IYYGGLAGAVPFVWESQPGTPIHRF 64

Query: 65  SDHLTPPLTPPPSFFSDSAKKPPKNRSKSLNLFHIFFNPKRKFDLLA-PPFSRSATLPSS 124
           SD LTPPLTPPPS+FSDS KKP K RSKSL+L HIFFN KRKFDLL+ PP S+SA+LPS 
Sbjct: 65  SDDLTPPLTPPPSYFSDSLKKPLKKRSKSLSLLHIFFNSKRKFDLLSPPPVSKSASLPSP 124

Query: 125 GSAIDSPARVKFATGRRTAARRCSEEEEE-AAATGSVMCFGIRR 167
           GS  DS A  KF TGRR+A R  +E+EEE AAA+GSV+CFG+ R
Sbjct: 125 GSVFDSAAGAKF-TGRRSARRFPTEKEEENAAASGSVLCFGLGR 166

BLAST of MS013875 vs. ExPASy TrEMBL
Match: A0A0A0L1H9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G329820 PE=4 SV=1)

HSP 1 Score: 220.3 bits (560), Expect = 5.9e-54
Identity = 122/164 (74.39%), Postives = 136/164 (82.93%), Query Frame = 0

Query: 5   SSDYPQKSLQIKQNDKFFSKLLSRESSRANSSSRSVYYGGFAGAVPFVWESQPGTPKHRF 64
           +S+YPQKSLQ KQNDKF SK+LSRESSRAN SSR +YYGG AGAVPFVWESQPGTP HRF
Sbjct: 5   TSEYPQKSLQFKQNDKFISKILSRESSRANYSSR-IYYGGLAGAVPFVWESQPGTPIHRF 64

Query: 65  SDHLTPPLTPPPSFFSDSAKKPPKNRSKSLNLFHIFFNPKRKFDLLA-PPFSRSATLPSS 124
           SD LTPPLTPPPS+FSDS KKP K RSKSL+L HIFF+ KRKFDLL+ PP S+S +L SS
Sbjct: 65  SDDLTPPLTPPPSYFSDSLKKPLKKRSKSLSLLHIFFSSKRKFDLLSPPPVSKSPSLSSS 124

Query: 125 GSAIDSPARVKFATGRRTAARRCSEEEEE-AAATGSVMCFGIRR 167
           GS  DS A  KF TGRR+A R  +E+EEE AAAT SV+CFGI R
Sbjct: 125 GSVFDSAAGAKF-TGRRSARRFPTEKEEENAAATSSVLCFGIGR 166

BLAST of MS013875 vs. ExPASy TrEMBL
Match: A0A6J1EB06 (uncharacterized protein LOC111432413 OS=Cucurbita moschata OX=3662 GN=LOC111432413 PE=4 SV=1)

HSP 1 Score: 208.8 bits (530), Expect = 1.8e-50
Identity = 114/163 (69.94%), Postives = 127/163 (77.91%), Query Frame = 0

Query: 5   SSDYPQKSLQIKQNDKFFSKLLSRESSRANSSSRSVYYGGFAGAVPFVWESQPGTPKHRF 64
           +SD   +SLQIK NDKFFSKLL+RESSRA+ SSR VYY G AGAVPF WESQPGTP HRF
Sbjct: 5   TSDNLHQSLQIKHNDKFFSKLLTRESSRADYSSR-VYYAGLAGAVPFGWESQPGTPIHRF 64

Query: 65  SDHLTPPLTPPPSFFSDSAKKPPKNRSKSLNLFHIFFNPKRKF-DLLAPPFSRSATLPSS 124
           SD LTPPLTPPPS+FSDS KKPPK RSKSL+LFHIFFNPKRK  DLL+PPFS+SA+LPSS
Sbjct: 65  SDDLTPPLTPPPSYFSDSLKKPPKKRSKSLSLFHIFFNPKRKIDDLLSPPFSKSASLPSS 124

Query: 125 GSAIDSPARVKFATGRRTAARRCSEEEEEAAATGSVMCFGIRR 167
           GS  DS A  +F     +      E+   AA TGSV+CFGI R
Sbjct: 125 GSMFDSAAGRRFPRRLPSGISHSKEKAAAAAPTGSVLCFGIGR 166

BLAST of MS013875 vs. ExPASy TrEMBL
Match: A0A6J1IKR7 (uncharacterized protein LOC111478334 OS=Cucurbita maxima OX=3661 GN=LOC111478334 PE=4 SV=1)

HSP 1 Score: 200.3 bits (508), Expect = 6.4e-48
Identity = 110/161 (68.32%), Postives = 120/161 (74.53%), Query Frame = 0

Query: 5   SSDYPQKSLQIKQNDKFFSKLLSRESSRANSSSRSVYYGGFAGAVPFVWESQPGTPKHRF 64
           +SDYP KSLQ K NDKFFSKLL+RESSRAN SSR +YYGG AGAVPFVWESQPGTP HRF
Sbjct: 5   TSDYPPKSLQFKHNDKFFSKLLTRESSRANHSSR-IYYGGLAGAVPFVWESQPGTPLHRF 64

Query: 65  SDHLTPPLTPPPSFFSDSAKKPPKNRSKSLNLFHIFFNPKRKFDLLAPPFSRSATLPSSG 124
           SD LTPPLTPPPS+FS S +KPPKNRSKSL+LFHIFFN KRK DLL PP S+SA+LPSSG
Sbjct: 65  SDDLTPPLTPPPSYFSHSLQKPPKNRSKSLSLFHIFFNHKRKLDLLTPPVSKSASLPSSG 124

Query: 125 SAIDSPARVKFATGRRTAARRCSEEEEEAAATGSVMCFGIR 166
           S  DS      A G    AR  + E       G   C G+R
Sbjct: 125 STFDS------AVGAAVCARSLAFE-------GGRGCGGLR 151

BLAST of MS013875 vs. TAIR 10
Match: AT2G40475.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G56260.2); Has 477 Blast hits to 219 proteins in 41 species: Archae - 0; Bacteria - 4; Metazoa - 91; Fungi - 61; Plants - 144; Viruses - 0; Other Eukaryotes - 177 (source: NCBI BLink). )

HSP 1 Score: 75.9 bits (185), Expect = 3.5e-14
Identity = 58/156 (37.18%), Postives = 89/156 (57.05%), Query Frame = 0

Query: 18  NDKFFSKLLSRESSRANSSSRSVYYGGFAGAVPFVWESQPGTPKHR-FSDHL-TPPLTPP 77
           N    SK++ +ESS+ NSSSR  YYGG   +VPF+WE++PGTPKH  FS+ L  PPLTPP
Sbjct: 10  NGVISSKIIVKESSQVNSSSRIYYYGG--ASVPFLWETRPGTPKHALFSESLRLPPLTPP 69

Query: 78  PSFFSDSAKKPPK-NRSKSLNLFHIFFNPKRKFDLLAPPFSRSATLPSSGSAIDS---PA 137
           PS++S S+    K ++++++     F        +  P FS S+   SS S+  S   P+
Sbjct: 70  PSYYSSSSSSGNKLSKARTIKQTR-FVKTLLSRHVSRPSFSWSSASSSSSSSYSSSSPPS 129

Query: 138 RV-----KFATGRRTAARRCSEEEEEAAATGSVMCF 163
           +V     K  +  R+  +   EEE  +++  S +C+
Sbjct: 130 KVEHRPRKCYSCSRSYVKEDDEEEIVSSSPTSTLCY 162

BLAST of MS013875 vs. TAIR 10
Match: AT5G01790.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 13 growth stages; Has 121 Blast hits to 121 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 121; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 67.0 bits (162), Expect = 1.6e-11
Identity = 70/177 (39.55%), Postives = 82/177 (46.33%), Query Frame = 0

Query: 12  SLQIKQND--KFFSKLLSRES-----SRANSSSRSVYYGGFAGAVPFVWESQPGTPKHRF 71
           SL +K+ D   F  KL S +      S A  S R  YY G AGAVPF WES PGTPKH  
Sbjct: 31  SLSLKKQDTATFSGKLPSTKQRFSSVSAACPSFRIYYYDGAAGAVPFEWESHPGTPKHPS 90

Query: 72  SDHLT-PPLTPPPSFFSDSAKKPPKNRSKSLNLFHIFFNPKRKFDLLAPPFSRSATLPSS 131
           S+  T PPLTPPPS FS S  +  + RSK      +   P R F L      ++  L S+
Sbjct: 91  SELPTLPPLTPPPSHFSFSGDQ-IRRRSKKSTKKILALIPTRLFWLSGDHNGKAKKL-SA 150

Query: 132 GSAIDSPARV----------KFATGRRTAARRCSEEEEEA----AATGSVMCFGIRR 167
            S      RV          KF T  R   RR S  +  A      + S  CFGIRR
Sbjct: 151 SSPPSLSERVLIDENEYDLFKFQT-ERNVMRRFSSFDSSADYPIQRSQSTSCFGIRR 204

BLAST of MS013875 vs. TAIR 10
Match: AT3G56260.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G40475.1). )

HSP 1 Score: 58.2 bits (139), Expect = 7.5e-09
Identity = 49/149 (32.89%), Postives = 73/149 (48.99%), Query Frame = 0

Query: 29  ESSRANSSSRSVYYGGFAGAVPFVWESQPGTPK-HRFSDHLTP-PLTPPPSFFSDSAKKP 88
           E   A    RS YYGG   ++PF+WES+PGTPK H  SD   P PLTPPPS++S      
Sbjct: 6   EDDFAIDEERSSYYGG--ASIPFIWESRPGTPKNHLCSDSSLPLPLTPPPSYYSSGILST 65

Query: 89  PKNRSKSLNLFHIFFNPKRKFDL----------LAPPFSRSATLPSSGSAIDSPARVK-- 148
           P+ +SK  +    F +     DL           +  FS S+T  SS  +   P  +K  
Sbjct: 66  PRTQSKVRSKLSKFLSFSMFSDLRRSNHGSKKTASSSFSWSSTSSSSSFSSSPPHSLKKR 125

Query: 149 FATGRRTAARRCSEEEEE--AAATGSVMC 162
            +  +++     + EE+E  ++ T ++ C
Sbjct: 126 MSHDKKSPLLYANYEEDELRSSPTSTLCC 152

BLAST of MS013875 vs. TAIR 10
Match: AT1G06930.1 (unknown protein; Has 4478 Blast hits to 355 proteins in 82 species: Archae - 0; Bacteria - 29; Metazoa - 379; Fungi - 125; Plants - 120; Viruses - 25; Other Eukaryotes - 3800 (source: NCBI BLink). )

HSP 1 Score: 55.1 bits (131), Expect = 6.4e-08
Identity = 41/115 (35.65%), Postives = 51/115 (44.35%), Query Frame = 0

Query: 41  YYGGFAGAVPFVWESQPGTPKH--------------RFSDHLTPPLTPPPSFFSDSAKKP 100
           YYGG + AVPF WESQPGTP+                F+  ++ PLTPPPS+F  S    
Sbjct: 24  YYGGSSAAVPFKWESQPGTPRRLSKRSSSSGFNSDSDFNFPVSAPLTPPPSYFYASPSST 83

Query: 101 PKNRSKSLN-LFHIFFNPKRKFDLLAPPFSRSATLPSSGSAIDSPARVKFATGRR 141
                K  N LF    +  R      P    S++  SS S   SP R    + RR
Sbjct: 84  KHVSPKKTNTLFSSLLSKNRS----VPSSPASSSSSSSSSVPSSPLRTSDLSNRR 134

BLAST of MS013875 vs. TAIR 10
Match: AT4G25845.1 (BEST Arabidopsis thaliana protein match is: OSBP(oxysterol binding protein)-related protein 4B (TAIR:AT4G25850.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). )

HSP 1 Score: 44.3 bits (103), Expect = 1.1e-04
Identity = 27/66 (40.91%), Postives = 33/66 (50.00%), Query Frame = 0

Query: 30 SSRANSSSRSVYYGGFAGAVPFVWESQPGTPKHRFSDHLTPPLTPPPSFFSDSAKKP--- 89
          SS + +SS   Y       VPF WE QPGTP +     + PPL+PPP+  S    KP   
Sbjct: 10 SSISRNSSVGYYDERMPEGVPFEWEMQPGTPINTQPREVVPPLSPPPAMLSLGLPKPSIS 69

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022144087.11.7e-6699.25uncharacterized protein LOC111013865, partial [Momordica charantia][more]
XP_008464261.12.6e-5676.22PREDICTED: uncharacterized protein LOC103502186 [Cucumis melo][more]
XP_038882810.13.4e-5673.65uncharacterized protein LOC120073955 [Benincasa hispida][more]
KAG6603545.15.9e-5673.65hypothetical protein SDJN03_04154, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_011653717.11.2e-5374.39uncharacterized protein LOC105435254 [Cucumis sativus][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1CSP78.0e-6799.25uncharacterized protein LOC111013865 OS=Momordica charantia OX=3673 GN=LOC111013... [more]
A0A1S3CL261.3e-5676.22uncharacterized protein LOC103502186 OS=Cucumis melo OX=3656 GN=LOC103502186 PE=... [more]
A0A0A0L1H95.9e-5474.39Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G329820 PE=4 SV=1[more]
A0A6J1EB061.8e-5069.94uncharacterized protein LOC111432413 OS=Cucurbita moschata OX=3662 GN=LOC1114324... [more]
A0A6J1IKR76.4e-4868.32uncharacterized protein LOC111478334 OS=Cucurbita maxima OX=3661 GN=LOC111478334... [more]
Match NameE-valueIdentityDescription
AT2G40475.13.5e-1437.18unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
AT5G01790.11.6e-1139.55unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
AT3G56260.27.5e-0932.89unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
AT1G06930.16.4e-0835.65unknown protein; Has 4478 Blast hits to 355 proteins in 82 species: Archae - 0; ... [more]
AT4G25845.11.1e-0440.91BEST Arabidopsis thaliana protein match is: OSBP(oxysterol binding protein)-rela... [more]
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 60..90
NoneNo IPR availablePANTHERPTHR33257:SF24EXPRESSED PROTEINcoord: 8..163
NoneNo IPR availablePANTHERPTHR33257OS05G0165500 PROTEINcoord: 8..163

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS013875.1MS013875.1mRNA