
MS013875 (gene) Bitter gourd (TR) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.CTGCGAAATATGAGCTCCGATTATCCCCAAAAATCGCTCCAAATCAAGCAGAACGACAAATTCTTCTCCAAGCTTCTAAGCAGAGAAAGCTCCAGAGCCAATTCCTCTTCCAGATCGGTCTACTATGGCGGATTCGCCGGCGCCGTCCCCTTCGTTTGGGAATCTCAGCCAGGTACGCCCAAACACCGATTCTCCGACCACCTTACGCCTCCTCTCACTCCTCCTCCCTCTTTCTTCTCCGATTCCGCTAAAAAACCGCCCAAAAACCGCTCCAAATCCCTCAATCTCTTCCACATCTTCTTCAATCCCAAGCGGAAATTCGATCTGTTGGCGCCGCCGTTTTCCAGATCCGCGACATTGCCGTCTTCCGGATCGGCGATCGACTCGCCTGCCAGAGTGAAGTTCGCCACCGGGCGCCGTACGGCGGCGCGGCGGTGTTCGGAGGAGGAAGAGGAAGCGGCGGCCACCGGTTCGGTTATGTGTTTCGGAATCCGCAGG CTGCGAAATATGAGCTCCGATTATCCCCAAAAATCGCTCCAAATCAAGCAGAACGACAAATTCTTCTCCAAGCTTCTAAGCAGAGAAAGCTCCAGAGCCAATTCCTCTTCCAGATCGGTCTACTATGGCGGATTCGCCGGCGCCGTCCCCTTCGTTTGGGAATCTCAGCCAGGTACGCCCAAACACCGATTCTCCGACCACCTTACGCCTCCTCTCACTCCTCCTCCCTCTTTCTTCTCCGATTCCGCTAAAAAACCGCCCAAAAACCGCTCCAAATCCCTCAATCTCTTCCACATCTTCTTCAATCCCAAGCGGAAATTCGATCTGTTGGCGCCGCCGTTTTCCAGATCCGCGACATTGCCGTCTTCCGGATCGGCGATCGACTCGCCTGCCAGAGTGAAGTTCGCCACCGGGCGCCGTACGGCGGCGCGGCGGTGTTCGGAGGAGGAAGAGGAAGCGGCGGCCACCGGTTCGGTTATGTGTTTCGGAATCCGCAGG CTGCGAAATATGAGCTCCGATTATCCCCAAAAATCGCTCCAAATCAAGCAGAACGACAAATTCTTCTCCAAGCTTCTAAGCAGAGAAAGCTCCAGAGCCAATTCCTCTTCCAGATCGGTCTACTATGGCGGATTCGCCGGCGCCGTCCCCTTCGTTTGGGAATCTCAGCCAGGTACGCCCAAACACCGATTCTCCGACCACCTTACGCCTCCTCTCACTCCTCCTCCCTCTTTCTTCTCCGATTCCGCTAAAAAACCGCCCAAAAACCGCTCCAAATCCCTCAATCTCTTCCACATCTTCTTCAATCCCAAGCGGAAATTCGATCTGTTGGCGCCGCCGTTTTCCAGATCCGCGACATTGCCGTCTTCCGGATCGGCGATCGACTCGCCTGCCAGAGTGAAGTTCGCCACCGGGCGCCGTACGGCGGCGCGGCGGTGTTCGGAGGAGGAAGAGGAAGCGGCGGCCACCGGTTCGGTTATGTGTTTCGGAATCCGCAGG LRNMSSDYPQKSLQIKQNDKFFSKLLSRESSRANSSSRSVYYGGFAGAVPFVWESQPGTPKHRFSDHLTPPLTPPPSFFSDSAKKPPKNRSKSLNLFHIFFNPKRKFDLLAPPFSRSATLPSSGSAIDSPARVKFATGRRTAARRCSEEEEEAAATGSVMCFGIRR Homology
BLAST of MS013875 vs. NCBI nr
Match: XP_022144087.1 (uncharacterized protein LOC111013865, partial [Momordica charantia]) HSP 1 Score: 263.1 bits (671), Expect = 1.7e-66 Identity = 132/133 (99.25%), Postives = 132/133 (99.25%), Query Frame = 0
BLAST of MS013875 vs. NCBI nr
Match: XP_008464261.1 (PREDICTED: uncharacterized protein LOC103502186 [Cucumis melo]) HSP 1 Score: 229.2 bits (583), Expect = 2.6e-56 Identity = 125/164 (76.22%), Postives = 139/164 (84.76%), Query Frame = 0
BLAST of MS013875 vs. NCBI nr
Match: XP_038882810.1 (uncharacterized protein LOC120073955 [Benincasa hispida]) HSP 1 Score: 228.8 bits (582), Expect = 3.4e-56 Identity = 123/167 (73.65%), Postives = 136/167 (81.44%), Query Frame = 0
BLAST of MS013875 vs. NCBI nr
Match: KAG6603545.1 (hypothetical protein SDJN03_04154, partial [Cucurbita argyrosperma subsp. sororia] >KAG7033731.1 hypothetical protein SDJN02_03456, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 228.0 bits (580), Expect = 5.9e-56 Identity = 123/167 (73.65%), Postives = 136/167 (81.44%), Query Frame = 0
BLAST of MS013875 vs. NCBI nr
Match: XP_011653717.1 (uncharacterized protein LOC105435254 [Cucumis sativus]) HSP 1 Score: 220.3 bits (560), Expect = 1.2e-53 Identity = 122/164 (74.39%), Postives = 136/164 (82.93%), Query Frame = 0
BLAST of MS013875 vs. ExPASy TrEMBL
Match: A0A6J1CSP7 (uncharacterized protein LOC111013865 OS=Momordica charantia OX=3673 GN=LOC111013865 PE=4 SV=1) HSP 1 Score: 263.1 bits (671), Expect = 8.0e-67 Identity = 132/133 (99.25%), Postives = 132/133 (99.25%), Query Frame = 0
BLAST of MS013875 vs. ExPASy TrEMBL
Match: A0A1S3CL26 (uncharacterized protein LOC103502186 OS=Cucumis melo OX=3656 GN=LOC103502186 PE=4 SV=1) HSP 1 Score: 229.2 bits (583), Expect = 1.3e-56 Identity = 125/164 (76.22%), Postives = 139/164 (84.76%), Query Frame = 0
BLAST of MS013875 vs. ExPASy TrEMBL
Match: A0A0A0L1H9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G329820 PE=4 SV=1) HSP 1 Score: 220.3 bits (560), Expect = 5.9e-54 Identity = 122/164 (74.39%), Postives = 136/164 (82.93%), Query Frame = 0
BLAST of MS013875 vs. ExPASy TrEMBL
Match: A0A6J1EB06 (uncharacterized protein LOC111432413 OS=Cucurbita moschata OX=3662 GN=LOC111432413 PE=4 SV=1) HSP 1 Score: 208.8 bits (530), Expect = 1.8e-50 Identity = 114/163 (69.94%), Postives = 127/163 (77.91%), Query Frame = 0
BLAST of MS013875 vs. ExPASy TrEMBL
Match: A0A6J1IKR7 (uncharacterized protein LOC111478334 OS=Cucurbita maxima OX=3661 GN=LOC111478334 PE=4 SV=1) HSP 1 Score: 200.3 bits (508), Expect = 6.4e-48 Identity = 110/161 (68.32%), Postives = 120/161 (74.53%), Query Frame = 0
BLAST of MS013875 vs. TAIR 10
Match: AT2G40475.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G56260.2); Has 477 Blast hits to 219 proteins in 41 species: Archae - 0; Bacteria - 4; Metazoa - 91; Fungi - 61; Plants - 144; Viruses - 0; Other Eukaryotes - 177 (source: NCBI BLink). ) HSP 1 Score: 75.9 bits (185), Expect = 3.5e-14 Identity = 58/156 (37.18%), Postives = 89/156 (57.05%), Query Frame = 0
BLAST of MS013875 vs. TAIR 10
Match: AT5G01790.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 13 growth stages; Has 121 Blast hits to 121 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 121; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 67.0 bits (162), Expect = 1.6e-11 Identity = 70/177 (39.55%), Postives = 82/177 (46.33%), Query Frame = 0
BLAST of MS013875 vs. TAIR 10
Match: AT3G56260.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G40475.1). ) HSP 1 Score: 58.2 bits (139), Expect = 7.5e-09 Identity = 49/149 (32.89%), Postives = 73/149 (48.99%), Query Frame = 0
BLAST of MS013875 vs. TAIR 10
Match: AT1G06930.1 (unknown protein; Has 4478 Blast hits to 355 proteins in 82 species: Archae - 0; Bacteria - 29; Metazoa - 379; Fungi - 125; Plants - 120; Viruses - 25; Other Eukaryotes - 3800 (source: NCBI BLink). ) HSP 1 Score: 55.1 bits (131), Expect = 6.4e-08 Identity = 41/115 (35.65%), Postives = 51/115 (44.35%), Query Frame = 0
BLAST of MS013875 vs. TAIR 10
Match: AT4G25845.1 (BEST Arabidopsis thaliana protein match is: OSBP(oxysterol binding protein)-related protein 4B (TAIR:AT4G25850.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). ) HSP 1 Score: 44.3 bits (103), Expect = 1.1e-04 Identity = 27/66 (40.91%), Postives = 33/66 (50.00%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
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